Research Output 2012 2019

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2019
11 Citations (Scopus)

A Jasmonate Signaling Network Activates Root Stem Cells and Promotes Regeneration

Zhou, W., Lozano-Torres, J. L., Blilou, I., Zhang, X., Zhai, Q., Smant, G., Li, C. & Scheres, B., 2 May 2019, In : Cell. 177, 4, p. 942-956

Research output: Contribution to journalArticleAcademicpeer-review

Stem cells
Regeneration
Stem Cells
Chemical activation
Growth
2018
13 Citations (Scopus)

A computational framework for cortical microtubule dynamics in realistically shaped plant cells

Chakrabortty, B., Blilou, I., Scheres, B. & Mulder, B. M., 1 Feb 2018, In : PLoS Computational Biology. 14, 2, e1005959.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microtubules
Plant Cells
microtubules
Geometry
Cell
13 Citations (Scopus)

A Plausible Microtubule-Based Mechanism for Cell Division Orientation in Plant Embryogenesis

Chakrabortty, B., Willemsen, V., de Zeeuw, T., Liao, C. Y., Weijers, D., Mulder, B. & Scheres, B., 8 Oct 2018, In : Current Biology. 28, 19, p. 3031-3043.e2

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microtubules
Cell Division
microtubules
Embryonic Development
cell division
38 Citations (Scopus)

Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses

van Velzen, R., Holmer, R., Bu, F., Rutten, L. J. J., van Zeijl, A. L., Liu, W., Santuari, L., Cao, Q., Sharma, T., Shen, D., Purwana Roswanjaya, Y., Wardhani, T., Seifi Kalhor, M., Jansen, J., van den Hoogen, D. J., Güngör, B., Hartog, M. V., Hontelez, J., Verver, J., Yang, W-C. & 11 others, Schijlen, E. G. W. M., Repin, R., Schilthuizen, M., Schranz, M. E., Heidstra, R., Miyata, K., Fedorova, E., Kohlen, W., Bisseling, A. H. J., Smit, S. & Geurts, R., 15 May 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 20, p. E4700-E4709

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Parasponia
Rhizobium
symbiosis
nodulation
genomics
6 Citations (Scopus)

Coordination of growth in root and shoot apices by AIL/PLT transcription factors

Scheres, B. & Krizek, B. A., 1 Feb 2018, In : Current Opinion in Plant Biology. 41, p. 95-101

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
root growth
transcription factors
root tips
cell differentiation
shoots
53 Citations (Scopus)

Lateral root formation and the multiple roles of auxin

Du, Y. & Scheres, B., 1 Jan 2018, In : Journal of Experimental Botany. 69, 2, p. 155-167

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Indoleacetic Acids
auxins
Asymmetric Cell Division
Plant Growth Regulators
Meristem
6 Citations (Scopus)

Mediator subunit MED31 is required for radial patterning of Arabidopsis roots

Zhang, X., Zhou, W., Chen, Q., Fang, M., Zheng, S., Scheres, B. & Li, C., 12 Jun 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 24, p. E5624-E5633

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
stem cells
Arabidopsis
transcription (genetics)
DNA-directed RNA polymerase
Arabidopsis thaliana
5 Citations (Scopus)

Optimizing FRET-FLIM labeling conditions to detect nuclear protein interactions at native expression levels in living Arabidopsis roots

Long, Y., Stahl, Y., Weidtkamp-Peters, S., Smet, W., Du, Y., Gadella, T. W. J., Goedhart, J., Scheres, B. & Blilou, I., 15 May 2018, In : Frontiers in Plant Science. 9, 639.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
nuclear proteins
energy transfer
microscopy
Arabidopsis
image analysis
3 Citations (Scopus)

Role of Tulipa gesneriana TEOSINTE BRANCHED1 (TgTB1) in the control of axillary bud outgrowth in bulbs

Moreno-Pachon, N. M., Mutimawurugo, M. C., Heynen, E., Sergeeva, L., Benders, A., Blilou, I., Hilhorst, H. W. M. & Immink, R. G. H., Jun 2018, In : Plant Reproduction. 31, 2, p. 145-157

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tulipa
Tulipa gesneriana
bulbs
buds
dormancy
16 Citations (Scopus)

Root stem cell niche organizer specification by molecular convergence of PLETHORA and SCARECROW transcription factor modules

Shimotohno, A., Heidstra, R., Blilou, I. & Scheres, B., 1 Aug 2018, In : Genes and Development. 32, 15-16, p. 1085-1100

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Stem Cell Niche
Transcription Factors
Homeobox Genes
Stem Cells
Proliferating Cell Nuclear Antigen
2 Citations (Scopus)

Transcription factor dosage: more or less sufficient for growth

Hofhuis, H. F. & Heidstra, R., Oct 2018, In : Current Opinion in Plant Biology. 45, p. 50-58

Research output: Contribution to journalArticleAcademicpeer-review

transcription factors
dosage
dimerization
root meristems
proteins
9 Citations (Scopus)

Transcription factor mediated control of anthocyanin biosynthesis in vegetative tissues

Outchkourov, N. S., Karlova, R. B., Hölscher, M., Schrama, X., Blilou, I., Jongedijk, E. J., Diez Simon, C., van Dijk, A. D. J., Bosch, H. J., Hall, R. D. & Beekwilder, M. J., Feb 2018, In : Plant Physiology. 176, 2, p. 1862-1878

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Anthocyanins
anthocyanins
Transcription Factors
transcription factors
biosynthesis

Tuning Division and Differentiation in Stomata: How to Silence a MUTE

Zamora-Zaragoza, J. & Scheres, B., 7 May 2018, In : Developmental Cell. 45, 3, p. 282-283

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cell Division
Tuning
Cells
Switches
Tissue
2017
26 Citations (Scopus)

Arabidopsis RETINOBLASTOMA RELATED directly regulates DNA damage responses through functions beyond cell cycle control

Horvath, B. M., Kourova, H., Nagy, S., Nemeth, E., Magyar, Z., Papdi, C., Ahmad, Z., Sanchez-Perez, G. F., Perilli, S., Blilou, I. & Scheres, B., 2017, In : The EMBO Journal. 36, p. 1261-1278 e201694561.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cell Cycle Checkpoints
Arabidopsis
DNA Damage
Genes
Cells
8 Citations (Scopus)

BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-golgi network/early endosome in arabidopsis thaliana

Kitakura, S., Adamowski, M., Matsuura, Y., Santuari, L., Kouno, H., Arima, K., Hardtke, C. S., Friml, J., Kakimoto, T. & Tanaka, H., 1 Oct 2017, In : Plant and Cell Physiology. 58, 10, p. 1801-1811

Research output: Contribution to journalArticleAcademicpeer-review

trans-Golgi Network
brefeldin A
Brefeldin A
endosomes
Endosomes
2 Citations (Scopus)
Open Access
Medicago
Medicago truncatula
Arabidopsis thaliana
promoter regions
Rhizobium
43 Citations (Scopus)

In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots

Long, Y., Stahl, Y., Weidtkamp-Peters, S., Postma, M., Zhou, W., Goedhart, J., Sánchez-Pérez, M. I., Gadella, T. W. J., Simon, R., Scheres, B. & Blilou, I., 2017, In : Nature. 548, 7665, p. 97-102

Research output: Contribution to journalArticleAcademicpeer-review

Energy Transfer
Fluorescence Microscopy
Arabidopsis
Proteins
Transcription Factors
26 Citations (Scopus)

Non-canonical WOX11-mediated root branching contributes to plasticity in arabidopsis root system architecture

Sheng, L., Hu, X., Du, Y., Zhang, G., Huang, H., Scheres, B. & Xu, L., 2017, In : Development. 144, 17, p. 3126-3133

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Arabidopsis
Cues
Seedlings
Soil
14 Citations (Scopus)

Plant-specific histone deacetylases HDT1/2 regulate GIBBERELLIN 2-OXIDASE2 expression to control arabidopsis root meristem cell number

Li, H., Torres-Garcia, J., Latrasse, D., Benhamed, M., Schilderink, S., Zhou, W., Kulikova, O., Hirt, H. & Bisseling, T., 1 Sep 2017, In : Plant Cell. 29, 9, p. 2183-2196

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Histone Deacetylases
Meristem
root meristems
Arabidopsis
histones
20 Citations (Scopus)

PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth

Du, Y. & Scheres, B., 31 Oct 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 44, p. 11709-11714

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
meristems
transcription factors
Arabidopsis
root primordia
mutants
31 Citations (Scopus)

The plant perceptron connects environment to development

Scheres, B. & Van Der Putten, W. H., 2017, In : Nature. 543, 7645, p. 337-345

Research output: Contribution to journalArticleAcademicpeer-review

plant response
life history
5 Citations (Scopus)

Two maize Kip-related proteins differentially interact with, inhibit and are phosphorylated by cyclin D-cyclin-dependent kinase complexes

Godínez-Palma, S. K., Rosas-Bringas, F. R., Rosas-Bringas, O. G., García-Ramírez, E., Zamora-Zaragoza, J. & Vázquez-Ramos, J. M., 2017, In : Journal of Experimental Botany. 68, 7, p. 1585-1597

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cyclin D
cyclin-dependent kinase
Cyclin-Dependent Kinases
cyclins
Zea mays
8 Citations (Scopus)

XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED

Zhao, C., Lasses, T., Bako, L., Kong, D., Zhao, B., Chanda, B., Bombarely, A., Cruz-Ramírez, A., Scheres, B., Brunner, A. M. & Beers, E. P., 2017, In : New Phytologist. 216, 1, p. 76-89

Research output: Contribution to journalArticleAcademicpeer-review

Angiosperms
tracheary elements
Xylem
xylem
Angiospermae
2016
9 Citations (Scopus)

A SCARECROW-based regulatory circuit controls Arabidopsis thaliana meristem size from the root endodermis

Moubayidin, L., Salvi, E., Giustini, L., Terpstra, I., Heidstra, R., Costantino, P. & Sabatini, S., 2016, In : Planta. p. 1159-1168 243.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
endodermis
Meristem
Arabidopsis
meristems
root meristems
27 Citations (Scopus)

Multisite gateway-compatible cell type-specific gene-inducible system for plants

Siligato, R., Wang, X., Yadav, S. R., Lehesranta, S., Ma, G., Ursache, R., Sevilem, I., Zhang, J., Gorte, M., Prasad, K., Wrzaczek, M., Heidstra, R., Murphy, A., Scheres, B. & Mähönen, A. P., 2016, In : Plant Physiology. 170, 2, p. 627-641

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Organism Cloning
molecular cloning
promoter regions
Arabidopsis
Genes
3 Citations (Scopus)

PPP1, a plant-specific regulator of transcription controls Arabidopsis development and PIN expression

Benjamins, R., Barbez, E., Ortbauer, M., Terpstra, I., Lucyshyn, D., Moulinier-Anzola, J., Khan, M. A., Leitner, J., Malenica, N., Butt, H., Korbei, B., Scheres, B., Kleine-Vehn, J. & Luschnig, C., 2016, In : Scientific Reports. 6, 32196.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
binding proteins
transcription factors
promoter regions
Arabidopsis
DNA-binding proteins
6 Citations (Scopus)

Root patterning: It takes two to tangle

Scheres, B. & Laskowski, M., 2016, In : Journal of Experimental Botany. 67, 5, p. 1201-1203

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Botany
information sources
plant breeding
botany
Breeding
37 Citations (Scopus)

The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots

Santuari, L., Sanchez-Perez, G. F., Luijten, M., Rutjens, B., Terpstra, I., Berke, L., Gorte, M., Prasad, K., Bao, D., Timmermans-Hereijgers, J. L. P. M., Maeo, K., Nakamura, K., Shimotohno, A., Pencik, A., Novak, O., Ljung, K., Van Heesch, S., De Bruijn, E., Cuppen, E., Willemsen, V. & 6 others, Mähönen, A. P., Lukowitz, W., Snel, B., De Ridder, D., Scheres, B. & Heidstra, R., 2016, In : The Plant Cell. 28, 12, p. 2937-2951

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gene Regulatory Networks
Arabidopsis
cell differentiation
Cell Differentiation
Growth
35 Citations (Scopus)

Tracking transcription factor mobility and interaction in arabidopsis roots with fluorescence correlation spectroscopy

Clark, N. M., Hinde, E., Hinde, E., Fisher, A. P., Crosti, G., Blilou, I., Gratton, E., Benfey, P. N. & Sozzani, R., 2016, In : eLife. 5, JUN2016, e14770.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Fluorescence Spectrometry
Arabidopsis
Transcription Factors
Fluorescence
Spectroscopy
2015
26 Citations (Scopus)

A plant U-box protein, PUB4, regulates asymmetric cell division and cell proliferation in the root meristem

Kinoshita, A., ten Hove, C. A., Tabata, R., Yamada, M., Shimizu, N., Ishida, T., Yamaguchi, K., Shigenobu, S., Takebayashi, Y., Luchies, J., Kobayashi, M., Kurata, T., Wada, T., Seo, M., Hasebe, M., Blilou, I., Fukuda, H., Scheres, B., Heidstra, R., Kamiya, Y. & 1 others, Sawa, S., 2015, In : Development. 142, p. 444-453

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Asymmetric Cell Division
Meristem
Cell Proliferation
Stem Cells
Proteins
50 Citations (Scopus)

Arabidopsis BIRD zinc finger proteins jointly stabilize tissue boundaries by confining the cell fate regulator SHORT-ROOT and contributing to fate specification

Long, Y., Smet, W., Cruz-Ramírez, A., Sanchez Perez, G., Scheres, B. & Blilou, I., 2015, In : The Plant Cell. 27, 4, p. 1185-1199

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
zinc finger motif
Zinc Fingers
Arabidopsis
Proteins
proteins

Moleculaire inzichten vergroten sturingsmogelijkheden wortelgroei : Auxine speelt een sleutelrol

Scheres, B. J. G. & Heuvelink, E., Dec 2015, In : Onder Glas. 12, 12, p. 16-17

Research output: Contribution to journalArticleProfessional

Open Access
68 Citations (Scopus)

PLETHORA genes control regeneration by a two-step mechanism

Kareem, A., Durgaprasad, K., Sugimoto, K., Du, Y., Pulianmackal, A. J., Trivedi, Z. B., Abhayadev, P. V., Pinon, V., Meyerowitz, E. M., Scheres, B. & Prasad, K., 2015, In : Current Biology. 25, 8, p. 1017-1030

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Regeneration
Genes
Tissue
shoots
Stem cells
25 Citations (Scopus)

Root developmental programs shape the Medicago truncatula nodule meristem

Franssen, H., Xiao, T. T., Kulikova, O., Wan, X., Bisseling, T., Scheres, B. & Heidstra, R., 2015, In : Development. 142, p. 2941-2950

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Medicago truncatula
Meristem
Rhizobium
Genes
Gene Knockdown Techniques
20 Citations (Scopus)

SCARECROW-LIKE23 and SCARECROW jointly specify endodermal cell fate but distinctly control SHORT-ROOT movement

Long, Y., Goedhart, J., Schneijderberg, M., Terpstra, I., Shimotohno, A., Bouchet, B. P., Akhmanova, A., Gadella, T. W. J., Heidstra, R., Scheres, B. & Blilou, I., 2015, In : The Plant Journal. 84, 4, p. 773-784

Research output: Contribution to journalArticleAcademicpeer-review

Meristem
cells
Transcription Factors
stele
root meristems
12 Citations (Scopus)

The logic of communication: Roles for mobile transcription factors in plants

Long, Y., Scheres, B. & Blilou, I., 2015, In : Journal of Experimental Botany. 66, 4, p. 1133-1144

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Transcription Factors
transcription factors
Plant Development
prokaryotic cells
Eukaryota
54 Citations (Scopus)

Transcriptional control of tissue formation throughout root development

Moreno-Risueno, M. A., Sozzani, R., Yardimci, G. G., Petricka, J. J., Vernoux, T., Blilou, I., Alonso, J., Winter, C. M., Ohler, U., Scheres, B. & Benfey, P. N., 2015, In : Science. 350, 6259, p. 426-430 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

transcription factors
plant tissues
stem cells
cell division
root growth
2014
70 Citations (Scopus)

AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks

Horstman, A., Willemsen, V., Boutilier, K. A. & Heidstra, R., 2014, In : Trends in Plant Science. 19, 3, p. 146-157

Research output: Contribution to journalArticleAcademicpeer-review

transcription factors
somatic embryogenesis
meristems
plant tissues
stem cells
14 Citations (Scopus)

Growth of bubbles on a solid surface in response to a pressure reduction

Li, J., Chen, H., Zhou, W., Wu, B., Stoyanov, S. D. & Pelan, E. G., 2014, In : Langmuir. 30, 15, p. 4223-4228

Research output: Contribution to journalArticleAcademicpeer-review

pressure reduction
solid surfaces
Contact angle
bubbles
radii
40 Citations (Scopus)

Irreversible fate commitment in the Arabidopsis stomatal lineage requires a Fama and Retinoblastoma-related module

Matos, J. L., Lau, O. S., Hachez, C., Cruz-Ramirez, A., Scheres, B. & Bergmann, D. C., 2014, In : eLife. 3, e03271.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Retinoblastoma
Stem cells
Arabidopsis
Plant Cells
Cell Lineage

Luister! De wortel spreekt

Heselmans, M., Bisseling, T. & Scheres, B., 2014, In : NRC handelsblad. p. W4-W5 2 p.

Research output: Contribution to journalArticlePopular

85 Citations (Scopus)

Plant and animal stem cells: similar yet different

Heidstra, R. & Sabatini, S., 2014, In : Nature Reviews. Molecular Cell Biology. 15, p. 301-312

Research output: Contribution to journalArticleAcademicpeer-review

Plant Stems
Stem Cell Niche
Stem Cells
Plant Cells
Pluripotent Stem Cells
148 Citations (Scopus)

PLETHORA gradient formation mechanism separates auxin responses

Mahonen, A. P., ten Tusscher, K., Diaz Trivino, S., Heidstra, R. & Scheres, B., 2014, In : Nature. 515, p. 125-129

Research output: Contribution to journalArticleAcademicpeer-review

auxins
meristems
tropics
transcription (genetics)
tropisms
30 Citations (Scopus)

Precise control of plant stem cell activity through parallel regulatory inputs

Bennett, T., van Toorn, A., Willemsen, V. & Scheres, B., 2014, In : Development. 141, p. 4055-4064

Research output: Contribution to journalArticleAcademicpeer-review

Plant Stems
Plant Cells
Stem Cells
Transcription Factors
Stem Cell Niche
12 Citations (Scopus)

Sonication–Microfluidics for Fabrication of Nanoparticle-Stabilized Microbubbles

Chen, H., Li, J., Zhou, W., Pelan, E. G., Stoyanov, S. D., Arnaudov, L. N. & Stone, H. A., 2014, In : Langmuir. 30, 15, p. 4262-4266

Research output: Contribution to journalArticleAcademicpeer-review

Gases
Nanoparticles
cavitation flow
Cavitation
Fabrication
65 Citations (Scopus)

WOX5 Suppresses CYCLIN D Activity to Establish Quiescence at the Center of the Root Stem Cell Niche

Forzani, C., Aichinger, E., Willemsen, V. & Murray, J. A., 2014, In : Current Biology. 24, 16, p. 1939-1944

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Stem Cell Niche
Homeobox Genes
Stem cells
stem cells
niches
2013
65 Citations (Scopus)

A SCARECROW-RETINOBLASTOMA Protein Network Controls Protective Quiescence in the Arabidopsis Root Stem Cell Organizer

Cruz-Ramirez, A., Diaz Trivino, S., Wachsman, G., Du, Y., Arteága-Vázquez, M., Zhang Hongtao, Benjamins, R., Blilou, I., Neef, A. B., Chandler, V. & Scheres, B., 2013, In : PloS Biology. 11, 11, 12 p., e1001724.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Stem cells
Arabidopsis
stem cells
Stem Cells
Stem Cell Niche
87 Citations (Scopus)

Local auxin biosynthesis regulation by PLETHORA transcription factors controls phyllotaxis in Arabidopsis.

Pinon, V., Prasad, K., Grigg, S. P., Sanchez Perez, G. F. & Scheres, B., 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 3, p. 1107-1112

Research output: Contribution to journalArticleAcademicpeer-review

phyllotaxy
auxins
transcription factors
Arabidopsis
biosynthesis
48 Citations (Scopus)

Phyllotaxis and Rhizotaxis in Arabidopsis Are Modified by Three PLETHORA Transcription Factors

Hofhuis, H., Laskowski, M., Du, Y. J., Prasad, K., Grigg, S., Pinon, V. & Scheres, B., 2013, In : Current Biology. 23, 11, p. 956-962

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
phyllotaxy
Indoleacetic Acids
Meristem
Arabidopsis
Transcription Factors
56 Citations (Scopus)

Polar auxin transport: models and mechanisms

van Berkel, K., de Boer, R. J., Scheres, B. & ten Tusscher, K., 2013, In : Development. 140, 11, p. 2253-2268

Research output: Contribution to journalArticleAcademicpeer-review

Indoleacetic Acids
Plant Development
Meristem
Active Biological Transport
Hormones