Research Output

2020

The spatiotemporal control of cell divisions in Physcomitrella development

Tang, H., 2020, Wageningen: Wageningen University. 143 p.

Research output: Thesisinternal PhD, WU

Open Access
2019

A Jasmonate Signaling Network Activates Root Stem Cells and Promotes Regeneration

Zhou, W., Lozano-Torres, J. L., Blilou, I., Zhang, X., Zhai, Q., Smant, G., Li, C. & Scheres, B., 2 May 2019, In : Cell. 177, 4, p. 942-956

Research output: Contribution to journalArticleAcademicpeer-review

22 Citations (Scopus)

A Jasmonate signalling network activates root stem cells and promotes regeneration

Zhou, W., Lozano Torres, J. L., Blilou, I., Zhang, X., Zhai, Q., Smant, G., Li, C. & Scheres, B. J. G., 18 Jul 2019.

Research output: Contribution to conferencePoster

2018

A computational framework for cortical microtubule dynamics in realistically shaped plant cells

Chakrabortty, B., Blilou, I., Scheres, B. & Mulder, B. M., 1 Feb 2018, In : PLoS Computational Biology. 14, 2, e1005959.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
14 Citations (Scopus)

A Plausible Microtubule-Based Mechanism for Cell Division Orientation in Plant Embryogenesis

Chakrabortty, B., Willemsen, V., de Zeeuw, T., Liao, C. Y., Weijers, D., Mulder, B. & Scheres, B., 8 Oct 2018, In : Current Biology. 28, 19, p. 3031-3043.e2

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
16 Citations (Scopus)

Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses

van Velzen, R., Holmer, R., Bu, F., Rutten, L. J. J., van Zeijl, A. L., Liu, W., Santuari, L., Cao, Q., Sharma, T., Shen, D., Purwana Roswanjaya, Y., Wardhani, T., Seifi Kalhor, M., Jansen, J., van den Hoogen, D. J., Güngör, B., Hartog, M. V., Hontelez, J., Verver, J., Yang, W-C. & 11 others, Schijlen, E. G. W. M., Repin, R., Schilthuizen, M., Schranz, M. E., Heidstra, R., Miyata, K., Fedorova, E., Kohlen, W., Bisseling, A. H. J., Smit, S. & Geurts, R., 15 May 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 20, p. E4700-E4709

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
51 Citations (Scopus)

Coordination of growth in root and shoot apices by AIL/PLT transcription factors

Scheres, B. & Krizek, B. A., 1 Feb 2018, In : Current Opinion in Plant Biology. 41, p. 95-101

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Lateral root formation and the multiple roles of auxin

Du, Y. & Scheres, B., 1 Jan 2018, In : Journal of Experimental Botany. 69, 2, p. 155-167

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
70 Citations (Scopus)

Mediator subunit MED31 is required for radial patterning of Arabidopsis roots

Zhang, X., Zhou, W., Chen, Q., Fang, M., Zheng, S., Scheres, B. & Li, C., 12 Jun 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 24, p. E5624-E5633

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Optimizing FRET-FLIM labeling conditions to detect nuclear protein interactions at native expression levels in living Arabidopsis roots

Long, Y., Stahl, Y., Weidtkamp-Peters, S., Smet, W., Du, Y., Gadella, T. W. J., Goedhart, J., Scheres, B. & Blilou, I., 15 May 2018, In : Frontiers in Plant Science. 9, 639.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)

Role of Tulipa gesneriana TEOSINTE BRANCHED1 (TgTB1) in the control of axillary bud outgrowth in bulbs

Moreno-Pachon, N. M., Mutimawurugo, M. C., Heynen, E., Sergeeva, L., Benders, A., Blilou, I., Hilhorst, H. W. M. & Immink, R. G. H., Jun 2018, In : Plant Reproduction. 31, 2, p. 145-157

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Root stem cell niche organizer specification by molecular convergence of PLETHORA and SCARECROW transcription factor modules

Shimotohno, A., Heidstra, R., Blilou, I. & Scheres, B., 1 Aug 2018, In : Genes and Development. 32, 15-16, p. 1085-1100

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
22 Citations (Scopus)

Transcription factor dosage: more or less sufficient for growth

Hofhuis, H. F. & Heidstra, R., Oct 2018, In : Current Opinion in Plant Biology. 45, p. 50-58

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Transcription factor mediated control of anthocyanin biosynthesis in vegetative tissues

Outchkourov, N. S., Karlova, R. B., Hölscher, M., Schrama, X., Blilou, I., Jongedijk, E. J., Diez Simon, C., van Dijk, A. D. J., Bosch, H. J., Hall, R. D. & Beekwilder, M. J., Feb 2018, In : Plant Physiology. 176, 2, p. 1862-1878

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)

Tuning Division and Differentiation in Stomata: How to Silence a MUTE

Zamora-Zaragoza, J. & Scheres, B., 7 May 2018, In : Developmental Cell. 45, 3, p. 282-283

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2017

Analysis of a plant transcriptional regulatory network using transient expression systems

Díaz-Triviño, S., Long, Y., Scheres, B. & Blilou, I., 2017, Plant gene regulatory networks: Methods and protocols. Kaufmann, K. & Mueller-Roeber, B. (eds.). Humana Press Inc., p. 83-103 (Methods in Molecular Biology - Springer Protocols; vol. 1629).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Citations (Scopus)

Arabidopsis RETINOBLASTOMA RELATED directly regulates DNA damage responses through functions beyond cell cycle control

Horvath, B. M., Kourova, H., Nagy, S., Nemeth, E., Magyar, Z., Papdi, C., Ahmad, Z., Sanchez-Perez, G. F., Perilli, S., Blilou, I. & Scheres, B., 2017, In : The EMBO Journal. 36, p. 1261-1278 e201694561.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
32 Citations (Scopus)

BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-golgi network/early endosome in arabidopsis thaliana

Kitakura, S., Adamowski, M., Matsuura, Y., Santuari, L., Kouno, H., Arima, K., Hardtke, C. S., Friml, J., Kakimoto, T. & Tanaka, H., 1 Oct 2017, In : Plant and Cell Physiology. 58, 10, p. 1801-1811

Research output: Contribution to journalArticleAcademicpeer-review

9 Citations (Scopus)
Open Access
2 Citations (Scopus)

In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots

Long, Y., Stahl, Y., Weidtkamp-Peters, S., Postma, M., Zhou, W., Goedhart, J., Sánchez-Pérez, M. I., Gadella, T. W. J., Simon, R., Scheres, B. & Blilou, I., 2017, In : Nature. 548, 7665, p. 97-102

Research output: Contribution to journalArticleAcademicpeer-review

48 Citations (Scopus)

Non-canonical WOX11-mediated root branching contributes to plasticity in arabidopsis root system architecture

Sheng, L., Hu, X., Du, Y., Zhang, G., Huang, H., Scheres, B. & Xu, L., 2017, In : Development. 144, 17, p. 3126-3133

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
30 Citations (Scopus)

Parallel loss of symbiosis genes in relatives of nitrogen-fixing non-legume Parasponia

van Velzen, R., Holmer, R., Bu, F., Rutten, L. J. J., van Zeijl, A. L., Liu, W., Santuari, L., Cao, Q., Sharma, T., Shen, D., Purwana Roswanjaya, Y., Wardhani, T., Seifi Kalhor, M., Jansen, J., van den Hoogen, D. J., Gungor, B., Hartog, M. V., Hontelez, J., Verver, J. W. G., Yang, W. C. & 11 others, Schijlen, E. G. W. M., Repin, R., Schilthuizen, M., Schranz, M. E., Heidstra, R., Miyata, K., Fedorova, E., Kohlen, W., Bisseling, A. H. J., Smit, S. & Geurts, R., 28 Jul 2017, BioRxiv, 88 p.

Research output: Working paperAcademic

Plant cortical microtubule dynamics and cell division plane orientation

Chakrabortty, B., 2017, Wageningen: Wageningen University. 124 p.

Research output: Thesisinternal PhD, WU

Open Access

Plant-specific histone deacetylases HDT1/2 regulate GIBBERELLIN 2-OXIDASE2 expression to control arabidopsis root meristem cell number

Li, H., Torres-Garcia, J., Latrasse, D., Benhamed, M., Schilderink, S., Zhou, W., Kulikova, O., Hirt, H. & Bisseling, T., 1 Sep 2017, In : Plant Cell. 29, 9, p. 2183-2196

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
20 Citations (Scopus)

PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth

Du, Y. & Scheres, B., 31 Oct 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 44, p. 11709-11714

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
22 Citations (Scopus)

The plant perceptron connects environment to development

Scheres, B. & Van Der Putten, W. H., 2017, In : Nature. 543, 7645, p. 337-345

Research output: Contribution to journalArticleAcademicpeer-review

34 Citations (Scopus)

Transcriptional and functional targets of SCHIZORIZA in root development

van Liere, S., 2017, Wageningen: Wageningen University. 122 p.

Research output: Thesisinternal PhD, WU

Two maize Kip-related proteins differentially interact with, inhibit and are phosphorylated by cyclin D-cyclin-dependent kinase complexes

Godínez-Palma, S. K., Rosas-Bringas, F. R., Rosas-Bringas, O. G., García-Ramírez, E., Zamora-Zaragoza, J. & Vázquez-Ramos, J. M., 2017, In : Journal of Experimental Botany. 68, 7, p. 1585-1597

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)

XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED

Zhao, C., Lasses, T., Bako, L., Kong, D., Zhao, B., Chanda, B., Bombarely, A., Cruz-Ramírez, A., Scheres, B., Brunner, A. M. & Beers, E. P., 2017, In : New Phytologist. 216, 1, p. 76-89

Research output: Contribution to journalArticleAcademicpeer-review

11 Citations (Scopus)
2016

A SCARECROW-based regulatory circuit controls Arabidopsis thaliana meristem size from the root endodermis

Moubayidin, L., Salvi, E., Giustini, L., Terpstra, I., Heidstra, R., Costantino, P. & Sabatini, S., 2016, In : Planta. p. 1159-1168 243.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)

Multisite gateway-compatible cell type-specific gene-inducible system for plants

Siligato, R., Wang, X., Yadav, S. R., Lehesranta, S., Ma, G., Ursache, R., Sevilem, I., Zhang, J., Gorte, M., Prasad, K., Wrzaczek, M., Heidstra, R., Murphy, A., Scheres, B. & Mähönen, A. P., 2016, In : Plant Physiology. 170, 2, p. 627-641

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
28 Citations (Scopus)

PPP1, a plant-specific regulator of transcription controls Arabidopsis development and PIN expression

Benjamins, R., Barbez, E., Ortbauer, M., Terpstra, I., Lucyshyn, D., Moulinier-Anzola, J., Khan, M. A., Leitner, J., Malenica, N., Butt, H., Korbei, B., Scheres, B., Kleine-Vehn, J. & Luschnig, C., 2016, In : Scientific Reports. 6, 32196.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Root patterning: It takes two to tangle

Scheres, B. & Laskowski, M., 2016, In : Journal of Experimental Botany. 67, 5, p. 1201-1203

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots

Santuari, L., Sanchez-Perez, G. F., Luijten, M., Rutjens, B., Terpstra, I., Berke, L., Gorte, M., Prasad, K., Bao, D., Timmermans-Hereijgers, J. L. P. M., Maeo, K., Nakamura, K., Shimotohno, A., Pencik, A., Novak, O., Ljung, K., Van Heesch, S., De Bruijn, E., Cuppen, E., Willemsen, V. & 6 others, Mähönen, A. P., Lukowitz, W., Snel, B., De Ridder, D., Scheres, B. & Heidstra, R., 2016, In : The Plant Cell. 28, 12, p. 2937-2951

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
42 Citations (Scopus)

Tracking transcription factor mobility and interaction in arabidopsis roots with fluorescence correlation spectroscopy

Clark, N. M., Hinde, E., Hinde, E., Fisher, A. P., Crosti, G., Blilou, I., Gratton, E., Benfey, P. N. & Sozzani, R., 2016, In : eLife. 5, JUN2016, e14770.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
36 Citations (Scopus)
2015

A plant U-box protein, PUB4, regulates asymmetric cell division and cell proliferation in the root meristem

Kinoshita, A., ten Hove, C. A., Tabata, R., Yamada, M., Shimizu, N., Ishida, T., Yamaguchi, K., Shigenobu, S., Takebayashi, Y., Luchies, J., Kobayashi, M., Kurata, T., Wada, T., Seo, M., Hasebe, M., Blilou, I., Fukuda, H., Scheres, B., Heidstra, R., Kamiya, Y. & 1 others, Sawa, S., 2015, In : Development. 142, p. 444-453

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
28 Citations (Scopus)

Arabidopsis BIRD zinc finger proteins jointly stabilize tissue boundaries by confining the cell fate regulator SHORT-ROOT and contributing to fate specification

Long, Y., Smet, W., Cruz-Ramírez, A., Sanchez Perez, G., Scheres, B. & Blilou, I., 2015, In : The Plant Cell. 27, 4, p. 1185-1199

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
53 Citations (Scopus)

Correction: Plasma membrane-bound AGC3 kinases phosphorylate PIN auxin carriers at TPRXS(N/S) motifs to direct apical PIN recycling: Correction

Dhonukshe, P., Huang, F., Galvan-Ampudia, C. S., Ma¨ho¨nen, A. P., Kleinevehn, J., Xu, J., Quint, A., Prasad, K., Friml, J., Scheres, B. & Offringa, R., 2015, In : Development. 142, 13, p. 2386-2387

Research output: Contribution to journalComment/Letter to the editorAcademic

4 Citations (Scopus)

Moleculaire inzichten vergroten sturingsmogelijkheden wortelgroei : Auxine speelt een sleutelrol

Scheres, B. J. G. & Heuvelink, E., Dec 2015, In : Onder Glas. 12, 12, p. 16-17

Research output: Contribution to journalArticleProfessional

Open Access

PLETHORA genes control regeneration by a two-step mechanism

Kareem, A., Durgaprasad, K., Sugimoto, K., Du, Y., Pulianmackal, A. J., Trivedi, Z. B., Abhayadev, P. V., Pinon, V., Meyerowitz, E. M., Scheres, B. & Prasad, K., 2015, In : Current Biology. 25, 8, p. 1017-1030

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
73 Citations (Scopus)

Root developmental programs shape the Medicago truncatula nodule meristem

Franssen, H., Xiao, T. T., Kulikova, O., Wan, X., Bisseling, T., Scheres, B. & Heidstra, R., 2015, In : Development. 142, p. 2941-2950

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
30 Citations (Scopus)

SCARECROW-LIKE23 and SCARECROW jointly specify endodermal cell fate but distinctly control SHORT-ROOT movement

Long, Y., Goedhart, J., Schneijderberg, M., Terpstra, I., Shimotohno, A., Bouchet, B. P., Akhmanova, A., Gadella, T. W. J., Heidstra, R., Scheres, B. & Blilou, I., 2015, In : The Plant Journal. 84, 4, p. 773-784

Research output: Contribution to journalArticleAcademicpeer-review

22 Citations (Scopus)

The logic of communication: Roles for mobile transcription factors in plants

Long, Y., Scheres, B. & Blilou, I., 2015, In : Journal of Experimental Botany. 66, 4, p. 1133-1144

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
13 Citations (Scopus)

Transcriptional control of tissue formation throughout root development

Moreno-Risueno, M. A., Sozzani, R., Yardimci, G. G., Petricka, J. J., Vernoux, T., Blilou, I., Alonso, J., Winter, C. M., Ohler, U., Scheres, B. & Benfey, P. N., 2015, In : Science. 350, 6259, p. 426-430 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

57 Citations (Scopus)
2014

AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks

Horstman, A., Willemsen, V., Boutilier, K. A. & Heidstra, R., 2014, In : Trends in Plant Science. 19, 3, p. 146-157

Research output: Contribution to journalArticleAcademicpeer-review

75 Citations (Scopus)

Ben Scheres

Scheres, B., 2014, In : Current Biology. 24, 14, p. R636-R637

Research output: Contribution to journalEditorialAcademicpeer-review

Open Access

Growth of bubbles on a solid surface in response to a pressure reduction

Li, J., Chen, H., Zhou, W., Wu, B., Stoyanov, S. D. & Pelan, E. G., 2014, In : Langmuir. 30, 15, p. 4223-4228

Research output: Contribution to journalArticleAcademicpeer-review

14 Citations (Scopus)

Irreversible fate commitment in the Arabidopsis stomatal lineage requires a Fama and Retinoblastoma-related module

Matos, J. L., Lau, O. S., Hachez, C., Cruz-Ramirez, A., Scheres, B. & Bergmann, D. C., 2014, In : eLife. 3, e03271.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
43 Citations (Scopus)

Luister! De wortel spreekt

Heselmans, M., Bisseling, T. & Scheres, B., 2014, In : NRC handelsblad. p. W4-W5 2 p.

Research output: Contribution to journalArticlePopular

Nutrient computation for root architecture : Perspective

Bisseling, T. & Scheres, B., 2014, In : Science. 346, 6207, p. 300-301

Research output: Contribution to journalEditorialAcademic

18 Citations (Scopus)