Research Output 1993 2020

2016
8 Citations (Scopus)

Inheritance and QTL analysis of the determinants of flower color in tetraploid cut roses

Gitonga, V. W., Stolker, R., Koning-Boucoiran, C. F. S., Aelaei, M., Visser, R. G. F., Maliepaard, C. & Krens, F. A., 2016, In : Molecular Breeding. 36, 10, 143.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
tetraploidy
quantitative trait loci
inheritance (genetics)
Rosa
10 Citations (Scopus)

Integrating haplotype-specific linkage maps in tetraploid species using SNP markers

Bourke, P. M., Voorrips, R. E., Kranenburg, T., Jansen, H., Visser, R. G. F. & Maliepaard, C., 2016, In : Theoretical and Applied Genetics. 129, 11, p. 2211-2226 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
Solanum tuberosum
Haplotypes
tetraploidy
chromosome mapping
12 Citations (Scopus)

Maize feedstocks with improved digestibility reduce the costs and environmental impacts of biomass pretreatment and saccharification

Torres Salvador, A. F., Slegers, E., Noordam-Boot, C. M. M., Dolstra, O., Vlaswinkel, L., van Boxtel, A. J. B., Visser, R. G. F. & Trindade, L. M., 2016, In : Biotechnology for Biofuels. 9, 15 p., 63.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Saccharification
digestibility
Biomass
Cell Wall
Feedstocks

Metabolites contributing to taste in Agaricus bisporus

Baars, J. J. P., Sonnenberg, A. S. M., Mumm, R., Stijger, I. & Wehrens, H. R. M. J., Feb 2016, Plant Research International. 19 p. (PPO/PRI-report; no. 2016-1)

Research output: Book/ReportReportProfessional

Open Access
Agaricus bisporus
new variety
mushrooms
metabolites
breeding
6 Citations (Scopus)
Galactosidases
Lyases
Buffers
Cells
Galactans
4 Citations (Scopus)

Multi-trait QTL analysis for agronomic and quality characters of Agaricus bisporus (button mushrooms)

Gao, W., Baars, J. J. P., Maliepaard, C., Visser, R. G. F., Zhang, J. & Sonnenberg, A. S. M., 2016, In : AMB Express. 6, 67.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Agaricus
Agaricales
Chromosomes, Human, Pair 10
Genetic Recombination
Soil

Mushroom immunomodulation and germplasm: variation between and within mushroom species and perspectives for application.

Schots, A., Wilbers, R. H. P., Westerhof, L. B., van Esch, B. C. A. M., Garssen, J. & Sonnenberg, A. S. M., 2016, Science and Cultivation of Edible Fungi: Proceedings of the XIXth int. congress on the science and cultivatio of edible and medicinal fungi/Amsterdam/The Netherlands/30 may-2 june 2016. Baars, J. J. P. & Sonnenberg, A. S. M. (eds.). International Society for Mushroom Science (ISMS), p. 281-284

Research output: Chapter in Book/Report/Conference proceedingConference paper

New breeding technologies for smallholders' challenges

Smulders, M. J. M., 16 Feb 2016.

Research output: Contribution to conferenceAbstractAcademic

New Phytophthora resistance gene

Vossen, J. H., Jo, K. R. & Visser, R. G. F., 24 Mar 2016, Patent No. WO2016043588, Priority date 17 Sep 2014

Research output: PatentOther research output

Open Access
Phytophthora
nucleotide sequences
genes
proteins
Oomycetes

Nieuwsbrief Ruwvoer & Bodem: PPS Ruwvoer & Bodem

van de Wiel, C. C. M., van der Weide, R. Y., Verhoeven, J. T. W., Riemens, M. M., Schoutsen, M. A. & van Eekeren, N. J. M., Nov 2016, 3 p. Wageningen Plant Research.

Research output: Other contributionPamphlet

Open Access

Nitrogen use efficiency in potato: an integrated agronomic, physiological and genetic approach

Ospina Nieto, C. A., 2016, Wageningen: Wageningen University. 177 p.

Research output: Thesisinternal PhD, WU

Open Access
nutrient use efficiency
potatoes
nitrogen
canopy
diploidy

Nutritive value for ruminants of fungal treated wheat straw

Ratni, E., Sonnenberg, A. S. M., Hendriks, W. H. & Cone, J. W., 15 Apr 2016, p. 57-58.

Research output: Contribution to conferenceAbstractAcademic

Open Access

Nutritive value for ruminants of white-rot fungal treated wheat straw

Ratni, E., Schonewille, J. T., Sonnenberg, A. S. M., Hendriks, W. H. & Cone, J. W., 28 Oct 2016.

Research output: Contribution to conferenceAbstractAcademic

72 Citations (Scopus)

Opportunities for Products of New Plant Breeding Techniques

Schaart, J. G., van de Wiel, C. C. M., Lotz, L. A. P. & Smulders, R., 2016, In : Trends in Plant Science. 21, 5, p. 438-449

Research output: Contribution to journalArticleAcademicpeer-review

breeding methods
plant breeding
new crops
cultivars
Phytophthora infestans
7 Citations (Scopus)

Orphan Crops Browser: a bridge between model and orphan crops

Kamei, C. L. A., Severing, E. I., Dechesne, A., Furrer, H., Dolstra, O. & Trindade, L. M., 1 Jan 2016, In : Molecular Breeding. 36, 1, p. 1-18 9.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Lignin
Computational Biology
Transcriptome
Zea mays
Gene Expression
20 Citations (Scopus)

PediHaplotyper: software for consistent assignment of marker haplotypes in pedigrees

Voorrips, R. E., Bink, M. C. A. M., Kruisselbrink, J. W., Koehorst-van Putten, H. J. J. & van de Weg, E., 2016, In : Molecular Breeding. 36, 119.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Pedigree
pedigree
Haplotypes
Single Nucleotide Polymorphism
haplotypes
10 Citations (Scopus)

Photo-Reversible Supramolecular Hydrogels Assembled by α-Cyclodextrin and Azobenzene Substituted Poly(acrylic acid)s: Effect of Substitution Degree, Concentration, and Tethered Chain Length

Wang, M., Zhang, X., Li, L., Wang, J., Wang, J., Ma, J., Yuan, Z., Lincoln, S. F. & Guo, X., 2016, In : Macromolecular Materials and Engineering. 301, 2, p. 191-198

Research output: Contribution to journalArticleAcademicpeer-review

carbopol 940
Hydrogels
Azobenzene
Cyclodextrins
Chain length
2 Citations (Scopus)

Physical Interaction of T Cells with Dendritic Cells Is Not Required for the Immunomodulatory Effects of the Edible Mushroom Agaricus subrufescens

Wilbers, R. H. P., Westerhof, L. B., van de Velde, J., Smant, G., Valkenburg-van Raaij, D., Sonnenberg, A. S. M., Bakker, J. & Schots, A., 2016, In : Frontiers in Immunology. 7, 519.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Agaricus
Agaricales
Dendritic Cells
T-Lymphocytes
C-Type Lectins
13 Citations (Scopus)

Population structure and genome-wide association analysis for frost tolerance in oat using continuous SNP array signal intensity ratios

Tumino, G., Voorrips, R. E., Rizza, F., Badeck, F. W., Morcia, C., Ghizzoni, R., Germeier, C. U., Paulo, M. J., Terzi, V. & Smulders, M. J. M., 2016, In : Theoretical and Applied Genetics. 129, 9, p. 1711-1724

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
frost resistance
Genome-Wide Association Study
Single Nucleotide Polymorphism
oats
population structure
14 Citations (Scopus)

Probabilistic Multilocus Haplotype Reconstruction in Outcrossing Tetraploids

Zheng, C., Voorrips, R. E., Jansen, J., Hackett, C. A., Ho, J. & Bink, M. C. A. M., 2016, In : Genetics. 203, 1, p. 119-131

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
Haplotypes
Chromosome Pairing
Polyploidy
Solanum tuberosum
52 Citations (Scopus)

Progress on optimizing miscanthus biomass production for the european bioeconomy: Results of the EU FP7 project OPTIMISC

Lewandowski, I., Clifton-Brown, J., Trindade, L. M., van der Linden, G. C., Schwarz, K. U., Müller-Sämann, K., Anisimov, A., Chen, C. L., Dolstra, O., Donnison, I. S., Farrar, K., Fonteyne, S., Harding, G., Hastings, A., Huxley, L. M., Iqbal, Y., Khokhlov, N., Kiesel, A., Lootens, P., Meyer, H. & 11 others, Mos, M., Muylle, H., Nunn, C., Özgüven, M., Roldán-Ruiz, I., Schüle, H., Tarakanov, I., van der Weijde, T., Wagner, M., Xi, Q. & Kalinina, O., 18 Nov 2016, In : Frontiers in Plant Science. 7, 23 p., 1620.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Miscanthus
biomass production
biomass
biobased products
biogas
22 Citations (Scopus)

QTL mapping and breeding value estimation through pedigree-based analysis of fruit size and weight in four diverse peach breeding programs

Fresnedo-Ramírez, J., Frett, T. J., Sandefur, P. J., Bink, M. C. A. M. & van de Weg, E., 2016, In : Tree Genetics and Genomes. 12, 2, 25.

Research output: Contribution to journalArticleAcademicpeer-review

Pedigree
breeding value
pedigree
peaches
Breeding
10 Citations (Scopus)

Quantitative resistance against Bemisia tabaci in Solanum pennellii: Genetics and metabolomics

van den Elsen, F. H. W., Lucatti, A. F., van Heusden, A. W., Broekgaarden, C., Mumm, R., Dicke, M. & Vosman, B., 2016, In : Journal of Integrative Plant Biology. 58, 4, p. 397-412

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Solanum pennellii
Solanum
Hemiptera
Metabolomics
Bemisia tabaci

Quick phenotyping speeds up breeding process : PhenomicsNL

Polder, G., van der Linden, C. G. & van de Zedde, H. J., 2016, In : Prophyta Annual. 2016, p. 40-42

Research output: Contribution to journalArticleAcademic

Open Access
phenotype
breeding
plant breeding
phenomics
17 Citations (Scopus)
Open Access
Lycopersicon esculentum
biotic stress
resistance mechanisms
abiotic stress
salt stress

Role of MLO genes in susceptibility to powdery mildew in apple and grapevine

Pessina, S., 2016, Wageningen: Wageningen University. 222 p.

Research output: Thesisinternal PhD, WU

Open Access
powdery mildew
apples
genes
Podosphaera leucotricha
genotype
9 Citations (Scopus)

Scab resistance in ‘Geneva’ apple is conditioned by a resistance gene cluster with complex genetic control

Bastiaanse, H., Bassett, H. C. M., Kirk, C., Gardiner, S. E., Deng, C., Groenwold, R., Chagné, D. & Bus, V. G. M., 2016, In : Molecular Plant Pathology. 17, 2, p. 159-172

Research output: Contribution to journalArticleAcademicpeer-review

Venturia inaequalis
genetic resistance
Malus
Multigene Family
multigene family
11 Citations (Scopus)

Selective ligninolysis of wheat straw and wood chips by the white-rot fungus Lentinula edodes and its influence on in vitro rumen degradability

van Kuijk, S. J. A., del Rio, J. C., Rencoret, J., Gutiérrez, A., Sonnenberg, A. S. M., Baars, J. J. P., Hendriks, W. H. & Cone, J. W., 2016, In : Journal of Animal Science and Biotechnology. 7, 14 p., 55.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Shiitake Mushrooms
Lentinula edodes
white-rot fungi
wood chips
Lignin
14 Citations (Scopus)

Silencing of six susceptibility genes results in potato late blight resistance

Sun, K., Wolters, A-M. A., Vossen, J. H., Rouwet, M. E., Loonen, A. E. H. M., Jacobsen, E., Visser, R. G. F. & Bai, Y., 2016, In : Transgenic Research. 25, 5, p. 731-742

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Phytophthora infestans
Solanum tuberosum
vpr Genes
Genes
genes
4 Citations (Scopus)
Open Access
Allium
onions
introgression
breeding
Botrytis squamosa

Strategies to reduce or prevent wheat coeliacimmunogenicity and wheat sensitivity through food

Gilissen, L. J. W. J., van der Meer, I. M. & Smulders, M. J. M., 2016, Proceedings of the 29th Meeting, WORKING GROUP on PROLAMIN ANALYSIS and TOXICITY. Koehler, P. (ed.). Freising: Verlag Deutsche Forschungsanstalt für Lebensmittelchemie, p. 41-55

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

food allergies
gluten
wheat
gluten-free diet
disease prevention

Strategies to reduce or prevent wheat coeliac- immunogenicity and wheat sensitivity through food

Gilissen, L. J. W. J., van der Meer, I. M. & Smulders, M. J. M., 2016, Proceedings of the 29th Meeting Working Group on Prolamin Analysis and Toxicity (PWG). Koehler, P. (ed.). Tulln, Austria: WGPAT

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

food allergies
gluten
abdomen
immune response
wheat
88 Citations (Scopus)

Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea

Cheng, F., Sun, R., Hou, X., Zheng, H., Zhang, F., Zhang, Y., Liu, B., Liang, J., Zhuang, M., Liu, Y., Liu, D., Wang, X., Li, P., Liu, Y., Lin, K., Bucher, J., Zhang, N., Wang, Y., Wang, H., Deng, J. & 24 others, Liao, Y., Wei, K., Zhang, X., Fu, L., Hu, Y., Liu, J., Cai, C., Zhang, S., Zhang, S., Li, F., Zhang, H., Zhang, J., Guo, N., Liu, Z., Liu, J., Sun, C., Ma, Y., Zhang, H., Cui, Y., Freeling, M. R., Borm, T., Bonnema, G., Wu, J. & Wang, X., 2016, In : Nature Genetics. 48, 10, p. 1218-1224

Research output: Contribution to journalArticleAcademicpeer-review

Brassica rapa
Brassica
Brassica napus
Genome
Domestication
14 Citations (Scopus)

Supercritical CO2 extraction as an effective pretreatment step for wax extraction in a miscanthus biorefinery

Attard, T. M., McElroy, C. R., Gammons, R. J., Slattery, J. M., Supanchaiyamat, N., Kamei, C. L. A., Dolstra, O., Trindade, L. M., Bruce, N. C., McQueen-Mason, S. J., Shimizu, S. & Hunt, A. J., 7 Aug 2016, In : ACS sustainable chemistry & engineering. 4, 11, p. 5979-5988

Research output: Contribution to journalArticleAcademicpeer-review

Saccharification
policosanol
Waxes
wax
Chemical compounds
2 Citations (Scopus)

Systems genetics reveals key genetic elements of drought induced gene regulation in diploid potato

van Muijen, D., Kumari, A., Maliepaard, C., Visser, R. G. F. & van der Linden, G., 2016, In : Plant, Cell & Environment. 39, 9, p. 1895-1908

Research output: Contribution to journalArticleAcademicpeer-review

Droughts
Solanum tuberosum
Diploidy
diploidy
drought

Targets and tools for optimizing lignocellulosic biomass quality of miscanthus

van der Weijde, R. T., 2016, Wageningen: Wageningen University. 231 p.

Research output: Thesisinternal PhD, WU

Open Access
Miscanthus
cell walls
polysaccharides
biomass
lignin

Terugblik op de jubileumviering 125 jaar KNPV

Goud, J. C., 2016, In : Gewasbescherming. 47, 3, p. 35-39

Research output: Contribution to journalArticleProfessional

Open Access

The allo-octoploid strawberry: simply complex

van Dijk, T., 2016, Wageningen: Wageningen University. 185 p.

Research output: Thesisinternal PhD, WU

Open Access
strawberries
flowering
quantitative trait loci
Fragaria vesca
microsatellite repeats

The art of plant pathology

Missel, L., Goud, J. C., van der Wurff, A. W. G. & Stelder, F., 2016, In : Gewasbescherming. 47, 6, p. 169-183

Research output: Contribution to journalArticleProfessional

Open Access

The Art of Plant Pathology : exhibition 11 April 2016 until 07 October 2016

Goud, J-K., Missel, L. & van der Wurff, A., 2016, Wageningen: Wageningen UR Library. 16 p.

Research output: Book/ReportReportProfessional

Open Access
8 Citations (Scopus)

The effect of adding urea, manganese and linoleic acid to wheat straw and wood chips on lignin degradation by fungi and subsequent in vitro rumen degradation

van Kuijk, S. J. A., Sonnenberg, A. S. M., Baars, J. J. P., Hendriks, W. H. & Cone, J. W., 2016, In : Animal Feed Science and Technology. 213, p. 22-28

Research output: Contribution to journalArticleAcademicpeer-review

Ceriporiopsis subvermispora
wood chips
wheat straw
gas production (biological)
manganese
5 Citations (Scopus)

The effect of particle size and amount of inoculum on fungal treatment of wheat straw and wood chips

van Kuijk, S. J. A., Sonnenberg, A. S. M., Baars, J. J. P., Hendriks, W. H. & Cone, J. W., 2016, In : Journal of Animal Science and Biotechnology. 7, 1, 39.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Shiitake Mushrooms
wood chips
Straw
Lentinula edodes
wheat straw
1224 Citations (Scopus)

The FAIR Guiding Principles for scientific data management and stewardship: Comment

Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J. W., Da Silva Santos, L. B., Bourne, P. E., Bouwman, J., Brookes, A. J., Clark, T., Crosas, M., Dillo, I., Dumon, O., Edmunds, S., Evelo, C. T., Finkers, R., Gonzalez-Beltran, A. & 33 others, Gray, A. J. G., Groth, P., Goble, C., Grethe, J. S., Heringa, J., 't Hoen, P. A. C., Hooft, R., Kuhn, T., Kok, R., Kok, J., Lusher, S. J., Martone, M. E., Mons, A., Packer, A. L., Persson, B., Rocca-Serra, P., Roos, M., van Schaik, R., Sansone, S. A., Schultes, E., Sengstag, T., Slater, T., Strawn, G., Swertz, M. A., Thompson, M., van der Lei, J., van Mulligen, E., Velterop, J., Waagmeester, A., Wittenburg, P., Wolstencroft, K., Zhao, J. & Mons, B., 2016, In : Scientific Data. 3, 160018.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Reusability
Data Management
Information management
management
Reuse
22 Citations (Scopus)

The knock-down of the expression of MdMLO19 reduces susceptibility to powdery mildew (Podosphaera leucotricha) in apple (Malus domestica)

Pessina, S., Angeli, D., Martens, S., Visser, R. G. F., Bai, Y., Salamini, F., Velasco, R., Schouten, H. J. & Malnoy, M., 2016, In : Plant Biotechnology Journal. 14, 10, p. 2033-2044

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Podosphaera leucotricha
Malus
Malus domestica
powdery mildew
apples
1 Citation (Scopus)

The Role of Polyploidization and Interspecific Hybridization in the Breeding of Ornamental Crops

Marasek-Ciolakowska, A., Arens, P. F. P. & van Tuyl, J. M., 2016, Polyploidy and Hybridization for Crop Improvement. Mason, A. (ed.). CRC Press, p. 159-181

Research output: Chapter in Book/Report/Conference proceedingChapter

interspecific hybridization
ornamental plants
polyploidy
breeding
crops
17 Citations (Scopus)
Open Access
vpr Genes
Solanum
Phytophthora infestans
Solanum tuberosum
Bacterial Artificial Chromosomes