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2020

Adaptability analysis in a participatory variety trial of organic vegetable crops

Lyon, A., Tracy, W., Colley, M., Culbert, P., Mazourek, M., Myers, J., Zystro, J. & Silva, E. M., Jun 2020, In : Renewable Agriculture and Food Systems. 35, 3, p. 296-312 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Aphid populations showing differential levels of virulence on Capsicum accessions

Sun, M., Voorrips, R. E. & Vosman, B., Apr 2020, In : Insect Science. 27, 2, p. 336-348

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Aphid resistance in Capsicum maps to a locus containing LRR-RLK gene analogues

Sun, M., Voorrips, R. E., van’t Westende, W., van Kaauwen, M., Visser, R. G. F. & Vosman, B., Jan 2020, In : Theoretical and Applied Genetics. 133, 1, p. 227-237

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Carbon partitioning mechanisms in POTATO under drought stress

Aliche, E. B., Theeuwen, T. P. J. M., Oortwijn, M., Visser, R. G. F. & van der Linden, G., 1 Jan 2020, In : Plant Physiology and Biochemistry. 146, p. 211-219 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

CRISPR/Cas9 Gene Editing of Gluten in Wheat to Reduce Gluten Content and Exposure—Reviewing Methods to Screen for Coeliac Safety

Jouanin, A. A., Gilissen, L. J. W. J., Schaart, J. G., Leigh, F. J., Cockram, J., Wallington, E. J., Boyd, L. A., van den Broeck, H. C., van der Meer, I. M., America, A. H. P., Visser, R. G. F. & Smulders, M. J. M., 24 Apr 2020, In : Frontiers in Nutrition. 7, 51.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

CRISPR/Cas inactivation of RECQ4 increases homeologous crossovers in an interspecific tomato hybrid

de Maagd, R. A., Loonen, A., Chouaref, J., Pelé, A., Meijer-Dekens, F., Fransz, P. & Bai, Y., Mar 2020, In : Plant Biotechnology Journal. 18, 3, p. 805-813

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Distribution of P1(D1) wart disease resistance in potato germplasm and GWAS identification of haplotype-specific SNP markers

Prodhomme, C., Vos, P. G., Paulo, M. J., Tammes, J. E., Visser, R. G. F., Vossen, J. H. & van Eck, H. J., 11 Feb 2020, In : Theoretical and Applied Genetics.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Enabling reusability of plant phenomic datasets with MIAPPE 1.1

Papoutsoglou, E. A., Faria, D., Arend, D., Arnaud, E., Athanasiadis, I. N., Chaves, I., Coppens, F., Cornut, G., Costa, B. V., Ćwiek-Kupczyńska, H., Droesbeke, B., Finkers, R., Gruden, K., Junker, A., King, G. J., Krajewski, P., Lange, M., Laporte, M. A., Michotey, C., Oppermann, M. & 17 others, Ostler, R., Poorter, H., Ramı́rez-Gonzalez, R., Ramšak, Ž., Reif, J. C., Rocca-Serra, P., Sansone, S. A., Scholz, U., Tardieu, F., Uauy, C., Usadel, B., Visser, R. G. F., Weise, S., Kersey, P. J., Miguel, C. M., Adam-Blondon, A. F. & Pommier, C., 15 Mar 2020, In : New Phytologist.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Genetic Variability of Morphological, Flowering, and Biomass Quality Traits in Hemp (Cannabis sativa L.)

Petit, J., Salentijn, E. M. J., Paulo, M. J., Thouminot, C., van Dinter, B. J., Magagnini, G., Gusovius, H. J., Tang, K., Amaducci, S., Wang, S., Uhrlaub, B., Müssig, J. & Trindade, L. M., 20 Feb 2020, In : Frontiers in Plant Science. 11, 102.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Identification of QTLs Associated with Nitrogen Use Efficiency and Related Traits in a Diploid Potato Population

Getahun, B., Visser, R. G. F. & van der Linden, G., 3 Mar 2020, In : American Journal of Potato Research. 97, p. 185-201

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Machine learning to further improve the decision which boar ejaculates to process into artificial insemination doses

Kamphuis, C., Duenk, P., Veerkamp, R. F., Visser, B., Singh, G., Nigsch, A., De Mol, R. M. & Broekhuijse, M. L. W. J., Mar 2020, In : Theriogenology. 144, p. 112-121 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Marginal Lands to Grow Novel Bio-Based Crops: A Plant Breeding Perspective

Pancaldi, F. & Trindade, L. M., 3 Mar 2020, In : Frontiers in Plant Science. 11, 227.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Morphological and physiological responses of the potato stem transport tissues to dehydration stress

Aliche, E. B., Prusova-Bourke, A., Ruiz-Sanchez, M., Oortwijn, M., Gerkema, E., Van As, H., Visser, R. G. F. & van der Linden, C. G., 8 Jan 2020, In : Planta. 251, 2, 45.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Optimisation of droplet digital PCR for determining copy number variation of α-gliadin genes in mutant and gene-edited polyploid bread wheat

Jouanin, A., Tenorio-Berrio, R., Schaart, J. G., Leigh, F., Visser, R. G. F. & Smulders, M. J. M., Mar 2020, In : Journal of Cereal Science. 92, 102903.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Overexpression of a putative nitrate transporter (StNPF1.11) increases plant height, leaf chlorophyll content and tuber protein content of young potato plants

Klaassen, M. T., Dees, D. C. T., Garrido, R. M., Baéz, J. A., Schrijen, M., Baldeón Mendoza, P. G. & Trindade, L. M., 25 Mar 2020, In : Functional Plant Biology. 47, 5, p. 464-472

Research output: Contribution to journalArticleAcademicpeer-review

PathBank: a comprehensive pathway database for model organisms

Wishart, D. S., Li, C., Marcu, A., Badran, H., Pon, A., Budinski, Z., Patron, J., Lipton, D., Cao, X., Oler, E., Li, K., Paccoud, M., Hong, C., Guo, A. C., Chan, C., Wei, W. & Ramirez-Gaona, M., 8 Jan 2020, In : Nucleic acids research. 48, D1, p. D470-D478 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Pathogen manipulation of chloroplast function triggers a light-dependent immune recognition

Gao, C., Xu, H., Huang, J., Sun, B., Zhang, F., Savage, Z., Duggan, C., Yan, T., Wu, C. H., Wang, Y., Vleeshouwers, V. G. A. A., Kamoun, S., Bozkurt, T. O. & Dong, S., 28 Apr 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 17, p. 9613-9620 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Physiological and morphological characterisation of Limonium species in their natural habitats: Insights into their abiotic stress responses

González-Orenga, S., Llinares, J. V., Al Hassan, M., Fita, A., Collado, F., Lisón, P., Vicente, O. & Boscaiu, M., 1 Apr 2020, In : Plant and Soil. 449, 1-2, p. 267-284 18 p.

Research output: Contribution to journalArticleAcademicpeer-review

Red rust thrips in smallholder organic export banana in Latin America and the Caribbean: Pathways for control, compatible with organic certification

Arias de López, M., Corozo-Ayovi, R. E., Delgado, R., Osorio, B., Moyón, D., Rengifo, D., Suárez, P., Paulino, A., Medrano, S., Sanchez, L., Rojas, J. C., Vegas, U., Alburqueque, D., Staver, C., van Tol, R. & Clercx, L., 23 Mar 2020, In : Acta Horticulturae. 1272, p. 153-161 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

RG-I galactan side-chains are involved in the regulation of the water-binding capacity of potato cell walls

Klaassen, M. T. & Trindade, L. M., 1 Jan 2020, In : Carbohydrate Polymers. 227, 115353.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access

The ability to manipulate ROS metabolism in pepper may affect aphid virulence

Sun, M., Voorrips, R. E., van Kaauwen, M., Visser, R. G. F. & Vosman, B., 1 Jan 2020, In : Horticulture Research. 7, 1, 6.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access

Ty-1, a universal resistance gene against geminiviruses that is compromised by co-replication of a betasatellite

Voorburg, C. M., Yan, Z., Bergua-Vidal, M., Wolters, A. M. A., Bai, Y. & Kormelink, R., Feb 2020, In : Molecular Plant Pathology. 21, 2, p. 160-172

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)
2019

Agricultural nitrogen and phosphorus emissions to water and their mitigation options in the Haihe Basin, China

Zhao, Z., Qin, W., Bai, Z. & Ma, L., 1 Feb 2019, In : Agricultural Water Management. 212, p. 262-272

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)
Open Access
Open Access
1 Citation (Scopus)

A rapid method to screen wild Solanum for resistance to early blight

Wolters, P. J., de Vos, L., Bijsterbosch, G., Woudenberg, J. H. C., Visser, R. G. F., van der Linden, G. & Vleeshouwers, V. G. A. A., May 2019, In : European Journal of Plant Pathology. 154, 1, p. 109-114

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A template framework for environmental timeseries data acquisition

Samourkasidis, A., Papoutsoglou, E. & Athanasiadis, I. N., 1 Jul 2019, In : Environmental Modelling and Software. 117, p. 237-249

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Biologisch zaad: Waar komen we vandaan en waar willen we heen?

Lammerts Van Bueren, E., 2019, In : Dynamisch Perspectief. 2, p. 26-29

Research output: Contribution to journalArticleProfessional

Open Access

BrAPI-an application programming interface for plant breeding applications

Selby, P., Abbeloos, R., Backlund, J. E., Basterrechea Salido, M., Bauchet, G., Benites-Alfaro, O. E., Birkett, C., Calaminos, V. C., Carceller, P., Cornut, G., Vasques Costa, B., Edwards, J. D., Finkers, R., Yanxin Gao, S., Ghaffar, M., Glaser, P., Guignon, V., Hok, P., Kilian, A., König, P. & 30 others, Lagare, J. E. B., Lange, M., Laporte, M. A., Larmande, P., LeBauer, D. S., Lyon, D. A., Marshall, D. S., Matthews, D., Milne, I., Mistry, N., Morales, N., Mueller, L. A., Neveu, P., Papoutsoglou, E., Pearce, B., Perez-Masias, I., Pommier, C., Ramírez-González, R. H., Rathore, A., Raquel, A. M., Raubach, S., Rife, T., Robbins, K., Rouard, M., Sarma, C., Scholz, U., Sempéré, G., Shaw, P. D., Simon, R. & Verouden, M., 15 Oct 2019, In : Bioinformatics (Oxford, England). 35, 20, p. 4147-4155

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)

Breeding Has Increased the Diversity of Cultivated Tomato in The Netherlands

Schouten, H. J., Tikunov, Y., Verkerke, W., Finkers, R., Bovy, A., Bai, Y. & Visser, R. G. F., 20 Dec 2019, In : Frontiers in Plant Science. 10, 1606.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar

Clifton-Brown, J., Harfouche, A., Casler, M. D., Dylan Jones, H., Macalpine, W. J., Murphy-Bokern, D., Smart, L. B., Adler, A., Ashman, C., Awty-Carroll, D., Bastien, C., Bopper, S., Botnari, V., Brancourt-Hulmel, M., Chen, Z., Clark, L. V., Cosentino, S., Dalton, S., Davey, C., Dolstra, O. & 30 others, Donnison, I., Flavell, R., Greef, J., Hanley, S., Hastings, A., Hertzberg, M., Hsu, T. W., Huang, L. S., Iurato, A., Jensen, E., Jin, X., Jørgensen, U., Kiesel, A., Kim, D. S., Liu, J., McCalmont, J. P., McMahon, B. G., Mos, M., Robson, P., Sacks, E. J., Sandu, A., Scalici, G., Schwarz, K., Scordia, D., Shafiei, R., Shield, I., Slavov, G., Stanton, B. J., Swaminathan, K. & Trindade, L. M., Jan 2019, In : GCB Bioenergy. 11, 1, p. 118-151

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
21 Citations (Scopus)

Coincidence of potato CONSTANS (StCOL1) expression and light cannot explain night-break repression of tuberization

Plantenga, F. D. M., Heuvelink, E., Rienstra, J. A., Visser, R. G. F., Bachem, C. W. B. & Marcelis, L. F. M., Oct 2019, In : Physiologia Plantarum. 167, 2, p. 250-263

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access
3 Citations (Scopus)

Convergent evolution of hetero-oligomeric cellulose synthesis complexes in mosses and seed plants

Li, X., Speicher, T. L., Dees, D. C. T., Mansoori, N., McManus, J. B., Tien, M., Trindade, L. M., Wallace, I. S. & Roberts, A. W., 25 Apr 2019, In : Plant Journal.

Research output: Contribution to journalArticleAcademicpeer-review

Development of an in vitro protocol to screen Clavibacter michiganensis subsp. michiganensis pathogenicity in different Solanum species.

Mohd Nadzir, M. M., Vieira Lelis, F., Thapa, B., Ali, A., Visser, R. G. F., van Heusden, A. W. & van der Wolf, J. M., Jan 2019, In : Plant Pathology. 68, 1, p. 42-48

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Development of the GlutEnSeq capture system for sequencing gluten gene families in hexaploid bread wheat with deletions or mutations induced by γ-irradiation or CRISPR/Cas9

Jouanin, A., Borm, T., Boyd, L. A., Cockram, J., Leigh, F., Santos, B. A. C. M., Visser, R. G. F. & Smulders, M. J. M., 1 Jul 2019, In : Journal of Cereal Science. 88, p. 157-166 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Exogenous γ-aminobutyric acid treatment improves the cold tolerance of zucchini fruit during postharvest storage

Palma, F., Carvajal, F., Jiménez-Muñoz, R., Pulido, A., Jamilena, M. & Garrido, D., 1 Mar 2019, In : Plant Physiology and Biochemistry. 136, p. 188-195

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Exploring the treasure of plant molecules with integrated biorefineries

Torres, A. F., Xu, X., Nikiforidis, C. V., Bitter, J. H. & Trindade, L. M., 16 Apr 2019, In : Frontiers in Plant Science. 10, 478.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Family-based haplotype estimation and allele dosage correction for polyploids using short sequence reads

Motazedi, E., Maliepaard, C., Finkers, R., Visser, R. & De Ridder, D., 16 Apr 2019, In : Frontiers in Genetics. 10, MAR, 335.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Far-red radiation increases dry mass partitioning to fruits but reduces Botrytis cinerea resistance in tomato

Ji, Y., Ouzounis, T., Courbier, S., Kaiser, E., Nguyen, P. T., Schouten, H. J., Visser, R. G. F., Pierik, R., Marcelis, L. F. M. & Heuvelink, E., 1 Dec 2019, In : Environmental and Experimental Botany. 168, 103889.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

FitTetra 2.0 - Improved genotype calling for tetraploids with multiple population and parental data support

Zych, K., Gort, G., Maliepaard, C. A., Jansen, R. C. & Voorrips, R. E., 20 Mar 2019, In : BMC Bioinformatics. 20, 1, 148.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Food and environmental safety assessment of new plant varieties after the European Court decision: Process-triggered or product-based?

Kok, E. J., Glandorf, D. C. M., Prins, T. W. & Visser, R. G. F., 1 Jun 2019, In : Trends in Food Science and Technology. 88, p. 24-32 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Genetic dissection of flowering time in Brassica rapa responses to temperature and photoperiod

Xiao, D., Shen, H. R., Zhao, J. J., Wei, Y. P., Liu, D. R., Hou, X. L. & Bonnema, G., 1 Mar 2019, In : Plant Science. 280, p. 110-119

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

Genetic Diversity of Potato Cultivars for Nitrogen Use Efficiency Under Contrasting Nitrogen Regimes

Getahun, B. B., Kassie, M. M., Visser, R. G. F. & van der Linden, G., 14 Oct 2019, In : Potato Research.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Genetic mapping of tuber size distribution and marketable tuber yield under drought stress in potatoes

Aliche, E. B., Oortwijn, M., Theeuwen, T. P. J. M., Bachem, C. W. B., van Eck, H. J., Visser, R. G. F. & van der Linden, G., 1 Oct 2019, In : Euphytica. 215, 11, 186.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Genetics and Breeding of Lupinus mutabilis: An Emerging Protein Crop

Gulisano, A., Alves, S., Martins, J. N. & Trindade, L. M., 30 Oct 2019, In : Frontiers in Plant Science. 10, 1385.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)
Open Access
1 Citation (Scopus)