Research Output

Article

An eQTL analysis of partial resistance to Puccinia hordei in barley

Chen, X., Hackett, C. A., Niks, R. E., Hedley, P. E., Booth, C., Druka, A., Marcel, T. C., Vels, S. A., Bayer, M., Milne, I., Morris, J., Ramsay, L., Marshall, D., Cardle, L. & Waugh, R., 2010, In : PLoS ONE. 5, 1, 15 p., e8598.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
57 Citations (Scopus)

A new and versatile method for the successful conversion of AFLP-TM markers into simple single locus markers

Brugmans, B. W., van der Hulst, R. G. M., Visser, R. G. F., Lindhout, W. H. & van Eck, H., 2003, In : Nucleic acids research. 31, 10, p. e55 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Jiang, Y., Oron, T. R., Clark, W. T., Bankapur, A. R., D'Andrea, D., Lepore, R., Funk, C. S., Kahanda, I., Verspoor, K. M., Ben-Hur, A., Koo, D. C. E., Penfold-Brown, D., Shasha, D., Youngs, N., Bonneau, R., Lin, A., Sahraeian, S. M. E., Martelli, P. L., Profiti, G., Casadio, R. & 127 others, Cao, R., Zhong, Z., Cheng, J., Altenhoff, A., Skunca, N., Dessimoz, C., Dogan, T., Hakala, K., Kaewphan, S., Mehryary, F., Salakoski, T., Ginter, F., Fang, H., Smithers, B., Oates, M., Gough, J., Törönen, P., Koskinen, P., Holm, L., Chen, C. T., Hsu, W. L., Bryson, K., Cozzetto, D., Minneci, F., Jones, D. T., Chapman, S., BKC, D., Khan, I. K., Kihara, D., Ofer, D., Rappoport, N., Stern, A., Cibrian-Uhalte, E., Denny, P., Foulger, R. E., Hieta, R., Legge, D., Lovering, R. C., Magrane, M., Melidoni, A. N., Mutowo-Meullenet, P., Pichler, K., Shypitsyna, A., Li, B., Zakeri, P., ElShal, S., Tranchevent, L. C., Das, S., Dawson, N. L., Lee, D., Lees, J. G., Sillitoe, I., Bhat, P., Nepusz, T., Romero, A. E., Sasidharan, R., Yang, H., Paccanaro, A., Gillis, J., Sedeño-Cortés, A. E., Pavlidis, P., Feng, S., Cejuela, J. M., Goldberg, T., Hamp, T., Richter, L., Salamov, A., Gabaldon, T., Marcet-Houben, M., Supek, F., Gong, Q., Ning, W., Zhou, Y., Tian, W., Falda, M., Fontana, P., Lavezzo, E., Toppo, S., Ferrari, C., Giollo, M., Piovesan, D., Tosatto, S. C. E., del Pozo, A., Fernández, J. M., Maietta, P., Valencia, A., Tress, M. L., Benso, A., Di Carlo, S., Politano, G., Savino, A., Rehman, H. U., Re, M., Mesiti, M., Valentini, G., Bargsten, J. W., van Dijk, A-J., Gemovic, B., Glisic, S., Perovic, V., Veljkovic, V., Veljkovic, N., Almeida-e-Silva, D. C., Vencio, R. Z. N., Sharan, M., Vogel, J., Kansakar, L., Zhang, S., Vucetic, S., Wang, Z., Sternberg, M. J. E., Wass, M. N., Huntley, R. P., Martin, M. J., O'Donovan, C., Robinson, P. N., Moreau, Y., Tramontano, A., Babbitt, P. C., Brenner, S. E., Linial, M., Orengo, C. A., Rost, B., Greene, C. S., Mooney, S. D., Friedberg, I. & Radivojac, P., 2016, In : Genome Biology. 17, 1, 184.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
126 Citations (Scopus)

A Next-Generation Sequencing Method for Genotyping-by-Sequencing of Highly Heterozygous Autotetraploid Potato

Uitdewilligen, J. G. A. M. L., Wolters, A. M. A., D'hoop, B. B., Borm, T. J. A., Visser, R. G. F. & van Eck, H. J., 2013, In : PLoS ONE. 8, 5, 14 p., e62355.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
159 Citations (Scopus)

An integrated interspecific AFLP map of lettuce (Lactuca) based on two L. Saligna x L. sativa F2-populations

Jeuken, M., van Wijk, R., Peleman, J. & Lindhout, P., 2001, In : Theoretical and Applied Genetics. 103, p. 638-647

Research output: Contribution to journalArticleAcademicpeer-review

65 Citations (Scopus)

A non-directed approach to the differential analysis of multiple LC-MS-derived metabolic profiles

Vorst, O. F. J., de Vos, C. H., Lommen, A., Staps, R. V., Visser, R. G. F., Bino, R. J. & Hall, R. D., 2005, In : Metabolomics. 1, 2, p. 169-180

Research output: Contribution to journalArticleAcademicpeer-review

65 Citations (Scopus)

An Online Potato Pedigree Database Resource

van Berloo, R., Hutten, R. C. B., van Eck, H. J. & Visser, R. G. F., 2007, In : Potato Research. 50, 1, p. 45-57

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
45 Citations (Scopus)

A nonsymbiotic hemoglobin gene is expressed during somatic embryogenesis in Cichorium.

Hendriks, T., Scheer, I., Quillet, M. C., Randoux, B., Delbreil, B., Vasseur, J. & Hilbert, J. L., 1998, In : Biochimica et biophysica acta-protein structure and molecular enzymology. 1443, p. 193-197

Research output: Contribution to journalArticleAcademicpeer-review

31 Citations (Scopus)

A novel approach to locate Phytophthora infestans resistance genes on the potato genetic map

Jacobs, M. M. J., Vosman, B., Vleeshouwers, V. G. A. A., Visser, R. G. F., Henken, G. & van den Berg, R. G., 2010, In : Theoretical and Applied Genetics. 120, 4, p. 785-796

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
34 Citations (Scopus)

A novel major gene on chromosome 6H for resistance of barley against the barley yellow dwarf virus

Niks, R. E., Habekuss, A., Bekele, B. & Ordon, F., 2004, In : Theoretical and Applied Genetics. 109, 7, p. 1536-1543

Research output: Contribution to journalArticleAcademicpeer-review

34 Citations (Scopus)

A novel method for the construction of genome wide transcriptome maps

Brugmans, B. W., Fernandez del Carmen, A., Bachem, C. W. B., van Os, H., van Eck, H. J. & Visser, R. G. F., 2002, In : The Plant Journal. 31, 2, p. 211-222

Research output: Contribution to journalArticleAcademicpeer-review

35 Citations (Scopus)

A novel Zn2Cys6 transcription factor BcGaaR regulates D-galacturonic acid utilization in Botrytis cinerea

Zhang, L., Lubbers, R. J. M., Simon, A., Stassen, J. H. M., Vargas Ribera, P. R., Viaud, M. & van Kan, J. A. L., 2016, In : Molecular Microbiology. 100, 2, p. 247-262

Research output: Contribution to journalArticleAcademicpeer-review

19 Citations (Scopus)

An R2R3 MYB transcription factor associated with regulation of the anthocyanin biosynthetic pathway in Rosaceae (on linr)

Wang, K-L., Bolitho, K., Grafton, K., Kortstee, A. J., Karunairetnam, S., McGhie, T. K., Espley, R. V., Hellens, R. P. & Allan, A. C., 2010, In : BMC Plant Biology. 10, 50.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
362 Citations (Scopus)

An RFLP linkage map of Lycopersicon peruvianum.

van Ooijen, J. W., Sandbrink, J. M., Vrielink, M., Verkerk, R., Zabel, P. & Lindhout, P., 1994, In : Theoretical and Applied Genetics. 89, p. 1007-1013

Research output: Contribution to journalArticleAcademicpeer-review

58 Citations (Scopus)

Anther eating by snails and slugs in Streptocarpus

Zeven, A. C. & Neijzing, M. G., 1976, In : Acta botanica neerlandica. 28, p. 337-339

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
59 Citations (Scopus)

Anthocyanin production as a potential visual selection marker during plant transformation

Kortstee, A. J., Khan, S. A., Helderman, C. M., Trindade, L. M., Wu, Y., Visser, R. G. F., Brendolise, C., Allan, A. C., Schouten, H. J. & Jacobsen, E., 2011, In : Transgenic Research. 20, 6, p. 1253-1264

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
38 Citations (Scopus)

Antisense expression of polyphenol oxidase genes inhibits enzymatic browning in potato tubers.

Bachem, C. W. B., Speckmann, G. J., van der Linde, P. C. G., Verheggen, F. T. M., Hunt, M. D., Steffens, J. C. & Zabeau, M., 1994, In : Bio/Technology. 12, p. 1101-1105

Research output: Contribution to journalArticleAcademicpeer-review

109 Citations (Scopus)

Antisense suppression of a potato alpha-SNAP homologue leads to alterations in cellular development and assimilate distribution

Bachem, C. W. B., Oomen, R. J. F. J., Kuyt, S., Horvath, B. M., Claassens, M. M. J., Vreugdenhil, D. & Visser, R. G. F., 2000, In : Plant Molecular Biology. 43, 4, p. 473-482

Research output: Contribution to journalArticleAcademicpeer-review

14 Citations (Scopus)

An ultra-dense integrated linkage map for hexaploid chrysanthemum enables multi-allelic QTL analysis

van Geest, G., Bourke, P. M., Voorrips, R. E., Marasek-Ciolakowska, A., Liao, Y., Post, A., van Meeteren, U., Visser, R. G. F., Maliepaard, C. & Arens, P., Dec 2017, In : Theoretical and Applied Genetics. 130, 12, p. 2527-2541

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
20 Citations (Scopus)
19 Citations (Scopus)

Aphid populations showing differential levels of virulence on Capsicum accessions

Sun, M., Voorrips, R. E. & Vosman, B., Apr 2020, In : Insect Science. 27, 2, p. 336-348

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Aphid resistance in Capsicum maps to a locus containing LRR-RLK gene analogues

Sun, M., Voorrips, R. E., van’t Westende, W., van Kaauwen, M., Visser, R. G. F. & Vosman, B., Jan 2020, In : Theoretical and Applied Genetics. 133, 1, p. 227-237

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A Phylogenetic Analysis of Chloroplast Genomes Elucidates the Relationships of the Six Economically Important Brassica Species Comprising the Triangle of U

Li, P., Zhang, S., Li, F., Zhang, S., Zhang, H., Wang, X., Sun, R., Bonnema, G. & Borm, T. J. A., 2017, In : Frontiers in Plant Science. 8, 111.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
17 Citations (Scopus)

Apical dominance in Alstroemeria cultured in vitro

Pumisutapon, P., Visser, R. G. F. & de Klerk, G. J. M., 2009, In : Acta Horticulturae. 2009, 829, p. 145-148

Research output: Contribution to journalArticleAcademicpeer-review

A pipeline for high throughput detection and mapping of SNPs from EST databases

Anithakumari, A. M., Tang, J., van Eck, H. J., Visser, R. G. F., Leunissen, J. A. M., Vosman, B. & van der Linden, C. G., 2010, In : Molecular Breeding. 26, 1, p. 65-75

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
37 Citations (Scopus)

A potato tuber-expressed mNRA with homology to steroid dehydrogenases affects gibberellin levels and plant development

Bachem, C. W. B., Horvath, B. M., Trindade, L. M., Claassens, M. M. J., Davelaar, E., Jordi, W. J. R. M. & Visser, R. G. F., 2001, In : The Plant Journal. 25, p. 595-604

Research output: Contribution to journalArticleAcademicpeer-review

32 Citations (Scopus)

Application of a set of 14 c-DNA probes from wheat to detect restriction fragment length polymorphism (RFLP) in barley.

Liao, Y. C. & Niks, R. E., 1991, In : Euphytica. 53, p. 115-119

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

Applications of hydrophobins: current state and perspectives

Wösten, H. A. B. & Scholtmeijer, K., 2015, In : Applied Microbiology and Biotechnology. 99, 4, p. 1587-1597

Research output: Contribution to journalArticleAcademicpeer-review

61 Citations (Scopus)

Applied Biotechnology to combat the late blight in potato caused by Phytophthora infestans

Haverkort, A. J., Struik, P. C., Visser, R. G. F. & Jacobsen, E., 2009, In : Potato Research. 52, 3, p. 249-264

Research output: Contribution to journalArticleAcademicpeer-review

191 Citations (Scopus)

Approaches for development of cisgenic apples

Joshi, S. G., Soriano, J. M., Schaart, J. G., Broggini, G. A. L., Swankowski, I., Jacobsen, E., Krens, F. A. & Schouten, H. J., 2009, In : Transgenic Plant Journal. 3, p. 40-46

Research output: Contribution to journalArticleAcademicpeer-review

A QTL for broad spectrum resistance to cyst nematode species (Globodera spp.) maps to a resistance gene cluster in potato.

Rouppe van der Voort, J. N. A. M., Lindeman, W., Folkertsma, R., Hutten, R. C. B., Overmars, H., van der Vossen, E., Jacobsen, E. & Bakker, J., 1998, In : Theoretical and Applied Genetics. 96, p. 654-661

Research output: Contribution to journalArticleAcademicpeer-review

70 Citations (Scopus)

A quick enzyme squash technique for detailed studies on female meiosis in Solanum.

Jongedijk, E., 1987, In : Stain technology. 62, p. 135-141

Research output: Contribution to journalArticleAcademicpeer-review

8 Citations (Scopus)

A rapid method to screen wild Solanum for resistance to early blight

Wolters, P. J., de Vos, L., Bijsterbosch, G., Woudenberg, J. H. C., Visser, R. G. F., van der Linden, G. & Vleeshouwers, V. G. A. A., May 2019, In : European Journal of Plant Pathology. 154, 1, p. 109-114

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A rapid methyl salicylate clearing technique for routine phase contrast observations on female meiosis in Solanum.

Jongedijk, E., 1987, In : Journal of Microscopy. 146, p. 157-162

Research output: Contribution to journalArticleAcademicpeer-review

16 Citations (Scopus)

A rapid procedure for plant regeneration from protoplasts isolated from suspension cultures and leaf mesophyll cells of wild Solanum and Lycopersicon pennellii.

Tan, M. M. C., Boerrigter, H. S. & Kool, A. J., 1987, In : Plant Science. 49, p. 63-72

Research output: Contribution to journalArticleAcademicpeer-review

A recessive resistance gene for yellow rust (Puccinia striiformis West) in bread wheat (Triticum aestivum L.)

Zeven, A. C., Stubbs, R. W. & Sanders, M., 1984, In : Euphytica. 33, p. 561-562

Research output: Contribution to journalArticleAcademicpeer-review

A re-examination of the mechanisms of 2n gamete formation in potato and its implications for breeding

Ramanna, M. S., 1979, In : Euphytica. 28, p. 537-561

Research output: Contribution to journalArticleAcademicpeer-review

101 Citations (Scopus)

A re-investigation of the instability at the yv locus in tomato.

Wisman, P. S. & Ramanna, M. S., 1994, In : Heredity. 72, p. 536-546

Research output: Contribution to journalArticleAcademicpeer-review

Are specific testing protocols required for organic onion varieties? Analysis of onion variety testing under conventional and organic growing conditions

Lammerts Van Bueren, E., Osman, A. M., Tiemens-Hulscher, M., Struik, P. C., Burgers, S. L. G. E. & van den Broek, R. C. F. M., 2012, In : Euphytica. 184, 2, p. 181-193

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Are there heteromorphic sex chromosomes in spinach, Spinacia oleracea

Ramanna, M. S., 1976, In : Euphytica. 25, p. 277-284

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)

A satellite DNA element specific for roe deer (Capreolus capreolus).

Buntjer, J. B., Nijman, I. J., Zijlstra, C. & Lenstra, J. A., 1998, In : Chromosoma. 107, p. 1-5

Research output: Contribution to journalArticleAcademicpeer-review

A set of simple PCR markers converted from sequence specific RFLP markers on tomato Chromosomes 9 to 12

Bai, Y., Feng, X., van der Hulst, R. G. M. & Lindhout, W. H., 2004, In : Molecular Breeding. 13, 3, p. 281-287

Research output: Contribution to journalArticleAcademicpeer-review

19 Citations (Scopus)

A snapshot of the emerging tomato genome sequence

Mueller, L. A., Klein Lankhorst, R. M., Tanksley, S. D., Peters, R. M., van Staveren, M. J., Datema, E., Fiers, M. W. E. J., van Ham, R. C. H. J., Szinay, D. & de Jong, J. H. S. G. M., 2009, In : The Plant Genome. 2, 1, p. 78-92

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A socio-economic assessment of cowpea diversity on the Ghanaian market: implications for breeding

Quaye, W., Adofo, K., Buckman, E. S., Frempong, G., Jongerden, J. P. & Ruivenkamp, G. T. P., 2011, In : International Journal of Consumer Studies. 35, 6, p. 679-687

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)

Aspecten van horizontale resistentie

Parlevliet, J. E., 1978, In : Zaadbelangen : vakblad voor de Nederlandse zaadhandel. 32, p. 334-336

Research output: Contribution to journalArticleProfessional

Aspects of and problems with horizontal resistance

Parlevliet, J. E., 1979, In : Crop improvement. 5, p. 1-10

Research output: Contribution to journalArticleAcademicpeer-review

Aspects of participatory plant breeding for quinoa in marginal areas of Ecuador

McElhinny, E., Peralta, E., Mazon, N., Danial, D. L., Thiele, G. & Lindhout, P., 2007, In : Euphytica. 153, 3, p. 373-384

Research output: Contribution to journalArticleAcademicpeer-review

16 Citations (Scopus)

Assessing the genetic variation of Ty-1 and Ty-3 alleles conferring resistance to tomato yellow leaf curl virus in a broad tomato germplasm

Caro Rios, C. M., Verlaan, M. G., Julian, O., Finkers, H. J., Wolters, A. M. A., Hutton, S. F., Scott, J. W., Kormelink, R. J. M., Visser, R. G. F., Diez, M. J., Perez-de-Castro, A. & Bai, Y., 2015, In : Molecular Breeding. 35, 13 p., 132.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
17 Citations (Scopus)

Assessing the geographic representativeness of genebank collections: the case of Bolivian wild potatoes.

Hijmans, R. J., Garrett, K. A., Huaman, Z., Zhang, D. P., Schreuder, M. & Bonierbale, M., 2000, In : Conservation Biology. 14, 6, p. 1755-1765

Research output: Contribution to journalArticleAcademicpeer-review

111 Citations (Scopus)