Research Output 1924 2020

2016

Development of a breeding strategy for nitrogen use efficiency in spinach (Spinacia oleracea L.)

Chan Navarrete, J. R., 2016, Wageningen: Wageningen University. 161 p.

Research output: Thesisinternal PhD, WU

Open Access
Spinacia oleracea
nutrient use efficiency
spinach
breeding
hydroponics
40 Citations (Scopus)

Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children

Cheng, J., Ringel-Kulka, T., Heikamp-de Jong, G. A. M., Ringel, Y., Carroll, I., de Vos, W. M., Salojärvi, J. & Satokari, R. M., 2016, In : ISME Journal. 10, p. 1002-1014

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microbiota
Synbiotics
Clostridium
Actinobacteria
intestinal microorganisms
14 Citations (Scopus)
Open Access
Phytophthora infestans
Lycopersicon esculentum
Solanum tuberosum
powdery mildew
Arabidopsis
48 Citations (Scopus)

Drought stress tolerance strategies revealed by RNA-Seq in two sorghum genotypes with contrasting WUE

Fracasso, A., Trindade, L. M. & Amaducci, S., 2016, In : BMC Plant Biology. 16, 1, 115.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
drought tolerance
water use efficiency
RNA
drought
genotype
22 Citations (Scopus)

Drought tolerance strategies highlighted by two Sorghum bicolor races in a dry-down experiment

Fracasso, A., Trindade, L. & Amaducci, S., 15 Jan 2016, In : Journal of Plant Physiology. 190, p. 1-14

Research output: Contribution to journalArticleAcademicpeer-review

Sorghum
Droughts
Sorghum bicolor
drought tolerance
water stress
52 Citations (Scopus)
Open Access
Phytophthora
vpr Genes
Phytophthora infestans
Solanum tuberosum
potatoes
14 Citations (Scopus)

Effector-driven marker development and cloning of resistance genes against Phytophthora infestans in potato breeding clone SW93-1015

Lenman, M., Ali, A., Mühlenbock, P., Carlson-Nilsson, U., Liljeroth, E., Champouret, N., Vleeshouwers, V. G. A. A. & Andreasson, E., 2016, In : Theoretical and Applied Genetics. 129, 1, p. 105-115

Research output: Contribution to journalArticleAcademicpeer-review

Phytophthora infestans
Solanum tuberosum
Breeding
Organism Cloning
molecular cloning

Effects of environmental factors on bruising sensitivity of button mushrooms (Agaricus bisporus)

Gao, W., Baars, J. J. P., Dolstra, O., Visser, R. G. F., Zhang, J-X. & Sonnenberg, A. S. M., 2016, In : Mycosystema = Junwu Xuebao . 11, p. 1375-1386

Research output: Contribution to journalArticleAcademic

Agaricus bisporus
mushrooms
environmental factors
relative humidity
genotype

ELR interacts with sobir1 to mount defense responses against phytophthora infestans in potato

Domazakis, E., Joosten, M. H. A. J., Wouters, T. C. A. E., Kamoun, S., Visser, R. G. F. & Vleeshouwers, V. G. A. A., 30 Nov 2016, p. 165.

Research output: Contribution to conferenceAbstractAcademic

Open Access
Phytophthora infestans
potatoes
receptors
gene silencing
Solanum microdontum

EU-project CO-FREE - an update

Schmitt, A., Scherf, A., Mazzotta, S., Kühne, S., Pertot, I., Köhl, J., Markellou, A., Andrivon, D., Kowalska, J., Parveaud, C. E., Kelderer, M., Lammerts Van Bueren, E., Bruns, C., Kleinhenz, M. F. B., Smith, J., Simon-Levert, A., Pujos, P., Trapman, M., Stark, J., van Cutsem, P. & 4 others, Neerakkal, S., Kleeberg, H., Peters, A. & Tamm, L., 2016, Working Group "Biological and Integrated Control of Plant Pathogens": Proceedings of the XIII Meeting "Biocontrol of Plant Diseases: From the field to the laboratory and back again" at Uppsala (Sweden), June 15-18, 2014. Pertot, I., Jensen, D. F., Hökeberg, M., Karlsson, M., Sundh, I. & Elad, Y. (eds.). IOBC-WPRS, p. 255-256 (IOBC-WPRS Bulletin; vol. 115).

Research output: Chapter in Book/Report/Conference proceedingConference paperAcademic

1 Citation (Scopus)

Expression of an (engineered) 4,6-α-glucanotransferase in potato results in changes in starch characteristics

Xu, X., Dechesne, A., Visser, R. G. F. & Trindade, L. M., 2016, In : PLoS ONE. 11, 12, e0166981.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Solanum tuberosum
Starch
potatoes
starch
granules
16 Citations (Scopus)

Future-proof crops: challenges and strategies for climate resilience improvement

Kissoudis, C., van de Wiel, C., Visser, R. G. F. & van der Linden, G., 2016, In : Current Opinion in Plant Biology. 30, p. 47-56

Research output: Contribution to journalArticleAcademicpeer-review

climate
crops
phenotype
breeding
stress tolerance
1 Citation (Scopus)

Genetic control of water and nitrate capture and their use efficiency in lettuce (Lactuca sativa L.)

Kerbiriou, P. J., Maliepaard, C. A., Stomph, T. J., Koper, M., Froissart, D., Roobeek, I., Lammerts Van Bueren, E. T. & Struik, P. C., 2016, In : Frontiers in Plant Science. 7, 343.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Lactuca sativa
lettuce
nitrates
shoots
quantitative trait loci
9 Citations (Scopus)

Genetic map construction and QTL analysis of nitrogen use efficiency in spinach (Spinacia oleracea L.)

Chan Navarrete, J. R., Dolstra, O., van Kaauwen, M., Lammerts van Bueren, E. T. & van der Linden, G., 2016, In : Euphytica. 208, 3, p. 621-636

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Spinacia oleracea
nutrient use efficiency
spinach
quantitative trait loci
Nitrogen

Genetics and regulation of combined abiotic and biotic stress tolerance in tomato

Kissoudis, C., 2016, Wageningen: Wageningen University. 212 p.

Research output: Thesisinternal PhD, WU

Open Access
isogenic lines
biotic stress
stress tolerance
abiotic stress
salt stress
13 Citations (Scopus)

Genome resequencing and comparative variome analysis in a Brassica rapa and Brassica oleracea collection

Cheng, F., Wu, J., Cai, C., Fu, L., Liang, J., Borm, T., Zhuang, M., Zhang, Y., Zhang, F., Bonnema, G. & Wang, X., 2016, In : Scientific Data. 3, 160119.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Comparative Analysis
Crops
Genome
Genes
Vegetables
19 Citations (Scopus)

Genome-wide study of the tomato SlMLO gene family and its functional characterization in response to the powdery mildew fungus oidium neolycopersici

Zheng, Z., Appiano, M., Pavan, S., Bracuto, V., Ricciardi, L., Visser, R. G. F., Wolters, A. M. A. & Bai, Y., 2016, In : Frontiers in Plant Science. 7, A380.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Oidium neolycopersici
powdery mildew
tomatoes
loci
fungi
7 Citations (Scopus)

Genotypic differences in metabolomic changes during storage induced-degreening of chrysanthemum disk florets

van Geest, G., Choi, Y. H., Arens, P., Post, A., Liu, Y. & van Meeteren, U., 2016, In : Postharvest Biology and Technology. 115, p. 48-59

Research output: Contribution to journalArticleAcademicpeer-review

degreening
Chrysanthemum
Metabolomics
metabolomics
florets
5 Citations (Scopus)

Haplotype divergence and multiple candidate genes at Rphq2, a partial resistance QTL of barley to Puccinia hordei

Yeo Kuok San, F., Wang, Y., Vozabova, T., Huneau, C., Leroy, P., Chalhoub, B., Qi, X. Q., Niks, R. E. & Marcel, T. C., 2016, In : Theoretical and Applied Genetics. 129, 2, 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Puccinia hordei
Hordeum
Haplotypes
quantitative trait loci
haplotypes

Heat stress tolerance responses in developing tomato anthers

Bita, E., 2016, Wageningen: Wageningen University. 109 p.

Research output: Thesisinternal PhD, WU

Open Access
stress tolerance
anthers
heat stress
tomatoes
genotype

Hevige phytophthora-uitbraak 2016 benadrukt noodzaak resistente rassen

Lammerts Van Bueren, E., Hutten, R. C. B. & Engelen, C. J. M., 2016, In : Aardappelwereld. 2016, 9, p. 32-33

Research output: Contribution to journalArticleProfessional

Open Access
20 Citations (Scopus)
Open Access
base maps
Tetraploidy
tetraploidy
chromosome mapping
gardens
39 Citations (Scopus)

HsfA2 controls the activity of developmentally and stress-regulated heat stress protection mechanisms in tomato male reproductive tissues

Fragkostefanakis, S., Mesihovic, A., Simm, S., Paupière, M. J., Hu, Y., Paul, P., Mishra, S. K., Tschiersch, B., Theres, K., Bovy, A., Schleiff, E. & Scharf, K. D., 2016, In : Plant Physiology. 170, 4, p. 2461-2477

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Lycopersicon esculentum
heat stress
Hot Temperature
tomatoes
Heat-Shock Response
15 Citations (Scopus)
Open Access
Solanum chmielewskii
Solanum lycopersicum
introgression
secondary metabolites
tomatoes
18 Citations (Scopus)

Impact of Different Lignin Fractions on Saccharification Efficiency in Diverse Species of the Bioenergy Crop Miscanthus

van der Weijde, T., Torres Salvador, A. F., Dolstra, O., Dechesne, A., Visser, R. G. F. & Trindade, L. M., 2016, In : Bio Energy Research. 9, 1, p. 146-156

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Saccharification
Miscanthus
saccharification
energy crops
Lignin

Increasing carbohydrate degradation in compost during commercial mushroom production of Agaricus bisporus?

de Vos, A. M., Jurak, E., Pels, G., Scholtmeijer, K., Bonnet, B., Lugones, L. G., Kabel, M. A. & Wosten, H. A. B., 2016, Mushroom Science XIX: Proceedings of the XIXth international congress on the science and cultivation of edible fungi, Amsterdam, The Netherlands, 30 May-2 June 2016. Baars, J. J. P. & Sonnenberg, A. S. M. (eds.). International Society for Mushroom Science (ISMS), p. 347-349

Research output: Chapter in Book/Report/Conference proceedingConference paperAcademic

mushroom growing
Agaricus bisporus
composts
lignin
mushrooms
8 Citations (Scopus)

Inheritance and QTL analysis of the determinants of flower color in tetraploid cut roses

Gitonga, V. W., Stolker, R., Koning-Boucoiran, C. F. S., Aelaei, M., Visser, R. G. F., Maliepaard, C. & Krens, F. A., 2016, In : Molecular Breeding. 36, 10, 143.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
tetraploidy
quantitative trait loci
inheritance (genetics)
Rosa
10 Citations (Scopus)

Integrating haplotype-specific linkage maps in tetraploid species using SNP markers

Bourke, P. M., Voorrips, R. E., Kranenburg, T., Jansen, H., Visser, R. G. F. & Maliepaard, C., 2016, In : Theoretical and Applied Genetics. 129, 11, p. 2211-2226 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
Solanum tuberosum
Haplotypes
tetraploidy
chromosome mapping
24 Citations (Scopus)

Integration of multi-omics data for prediction of phenotypic traits using random forest

Acharjee, A., Kloosterman, B., Visser, R. G. F. & Maliepaard, C., 2016, In : BMC Bioinformatics. 17, 5, 180.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Random Forest
Gene expression
Metabolites
Gene Expression
Prediction
4 Citations (Scopus)

Isolate specificity and polygenic inheritance of resistance in barley to the heterologous rust pathogen Puccinia graminis f. sp. avenae

Dracatos, P. M., Nansamba, M., Berlin, A., Park, R. F. & Niks, R. E., 2016, In : Phytopathology. 106, 9, p. 1029-1037

Research output: Contribution to journalArticleAcademicpeer-review

polygenic inheritance
Puccinia graminis
barley
pathogens
quantitative trait loci
30 Citations (Scopus)

Knockdown of MLO genes reduces susceptibility to powdery mildew in grapevine

Pessina, S., Lenzi, L., Perazzolli, M., Campa, M., Dalla Costa, L., Urso, S., Valè, G., Salamini, F., Velasco, R. & Malnoy, M., 2016, In : Horticulture Research. 3, 16016.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
powdery mildew
Genes
loci
genes
Necator
13 Citations (Scopus)

Lettuce growth and quality optimization in a plant factory

Nicole, C. C. S., Charalambous, F., Martinakos, S., Van De Voort, S., Li, Z., Verhoog, M. & Krijn, M., 2016, In : Acta Horticulturae. 1134, p. 231-238

Research output: Contribution to journalArticleAcademicpeer-review

factories
lettuce
crop quality
lighting
color
10 Citations (Scopus)

Low-phosphate induction of plastidal stromules is dependent on strigolactones but not on the canonical strigolactone signaling component MAX2

Vismans, G., van der Meer, T., Langevoort, O., Schreuder, M., Bouwmeester, H., Peisker, H., Dörman, P., Ketelaar, T. & van der Krol, S., 2016, In : Plant Physiology. 172, 4, p. 2235-2244

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Plastids
Plant Growth Regulators
Droughts
Fungi
Phosphates
2 Citations (Scopus)

Low Temperature Affects Stem Cell Maintenance in Brassica oleracea Seedlings

de Jonge, J., Kodde, J., Severing, E. I., Bonnema, G., Angenent, G. C., Immink, R. G. H. & Groot, S. P. C., 2016, In : Frontiers in Plant Science. 7, 800.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Brassica oleracea
stem cells
blindness
seedlings
temperature
12 Citations (Scopus)

Maize feedstocks with improved digestibility reduce the costs and environmental impacts of biomass pretreatment and saccharification

Torres Salvador, A. F., Slegers, E., Noordam-Boot, C. M. M., Dolstra, O., Vlaswinkel, L., van Boxtel, A. J. B., Visser, R. G. F. & Trindade, L. M., 2016, In : Biotechnology for Biofuels. 9, 15 p., 63.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Saccharification
digestibility
Biomass
Cell Wall
Feedstocks
45 Citations (Scopus)

Matching the phenology of Net Ecosystem Exchange and vegetation indices estimated with MODIS and FLUXNET in-situ observations

Balzarolo, M., Vicca, S., Nguy-Robertson, A. L., Bonal, D., Elbers, J. A., Fu, Y. H., Grünwald, T., Horemans, J. A., Papale, D., Peñuelas, J., Suyker, A. & Veroustraete, F., 1 Mar 2016, In : Remote Sensing of Environment. 174, p. 290-300

Research output: Contribution to journalArticleAcademicpeer-review

net ecosystem exchange
moderate resolution imaging spectroradiometer
vegetation index
Ecosystems
phenology
5 Citations (Scopus)

Microspore induced doubled haploids production from ethyl methanesulfonate (EMS) soaked flower buds is an efficient strategy for mutagenesis in Chinese cabbage

Lu, Y., Dai, S., Gu, A., Liu, M., Wang, Y., Luo, S., Zhao, Y., Wang, S., Xuan, S., Chen, X., Li, X., Bonnema, G., Zhao, J. & Shen, S., 2016, In : Frontiers in Plant Science. 7, 9 p., 1780.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
ethyl methanesulfonate
Chinese cabbage
doubled haploids
microspores
mutagenesis
6 Citations (Scopus)

Modification of potato cell wall pectin by the introduction of rhamnogalacturonan lyase and β-galactosidase transgenes and their side effects

Huang, J. H., Kortstee, A., Dees, D. C. T., Trindade, L. M., Schols, H. A. & Gruppen, H., 2016, In : Carbohydrate Polymers. 144, p. 9-16

Research output: Contribution to journalArticleAcademicpeer-review

Galactosidases
Lyases
Buffers
Cells
Galactans
10 Citations (Scopus)

Molecular signals controlling the inhibition of nodulation by nitrate in Medicago truncatula

Van Noorden, G. E., Verbeek, R., Dinh, P., Jin, J., Green, A., Ng, J. L. P. & Mathesius, U., 2016, In : International Journal of Molecular Sciences. 17, 7, 1060.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Medicago truncatula
Nitrates
nitrates
Flavonoids
nodules
4 Citations (Scopus)

Multi-trait QTL analysis for agronomic and quality characters of Agaricus bisporus (button mushrooms)

Gao, W., Baars, J. J. P., Maliepaard, C., Visser, R. G. F., Zhang, J. & Sonnenberg, A. S. M., 2016, In : AMB Express. 6, 67.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Agaricus
Agaricales
Chromosomes, Human, Pair 10
Genetic Recombination
Soil

New Phytophthora resistance gene

Vossen, J. H., Jo, K. R. & Visser, R. G. F., 24 Mar 2016, Patent No. WO2016043588, Priority date 17 Sep 2014

Research output: PatentOther research output

Open Access
Phytophthora
nucleotide sequences
genes
proteins
Oomycetes
23 Citations (Scopus)

Nine things to know about elicitins

Derevnina, L., Dagdas, Y. F., De la Concepcion, J. C., Bialas, A., Kellner, R., Petre, B., Domazakis, E., Du, J., Wu, C. H., Lin, X., Aguilera-Galvez, C., Cruz-Mireles, N., Vleeshouwers, V. G. A. A. & Kamoun, S., 2016, In : New Phytologist. 212, 4, p. 888-895

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Phytophthora
Solanum microdontum
Pythium
Oomycetes
Solanum

Nitrogen use efficiency in potato: an integrated agronomic, physiological and genetic approach

Ospina Nieto, C. A., 2016, Wageningen: Wageningen University. 177 p.

Research output: Thesisinternal PhD, WU

Open Access
nutrient use efficiency
potatoes
nitrogen
canopy
diploidy
7 Citations (Scopus)

Orphan Crops Browser: a bridge between model and orphan crops

Kamei, C. L. A., Severing, E. I., Dechesne, A., Furrer, H., Dolstra, O. & Trindade, L. M., 1 Jan 2016, In : Molecular Breeding. 36, 1, p. 1-18 9.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Lignin
Computational Biology
Transcriptome
Zea mays
Gene Expression
3 Citations (Scopus)

Plant immunity switched from bacteria to virus

Giannakopoulou, A., Bialas, A., Kamoun, S. & Vleeshouwers, V. G. A. A., 2016, In : Nature Biotechnology. 34, 4, p. 391-392

Research output: Contribution to journalArticleAcademicpeer-review

Plant Immunity
Viruses
Bacteria

Potato breeding in the Netherlands: successful collaboration between farmers and commercial breeders

Almekinders, C. J. M., Mertens, L., van Loon, J. & Lammerts Van Bueren, E., May 2016, In : Farming Matters. 32, Special Issue April, p. 34-37

Research output: Contribution to journalArticleProfessional

Open Access
Netherlands
potatoes
farmers
breeding
private sector
31 Citations (Scopus)

Potato StCONSTANS-like1 Suppresses Storage Organ Formation by Directly Activating the FT-like StSP5G Repressor

Abelenda, J. A., Cruz-Oró, E., Franco-Zorrilla, J. M. & Prat, S., 4 Apr 2016, In : Current Biology. 26, 7, p. 872-881 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
storage organs
Solanum tuberosum
potatoes
Chemical activation
Light
52 Citations (Scopus)

Progress on optimizing miscanthus biomass production for the european bioeconomy: Results of the EU FP7 project OPTIMISC

Lewandowski, I., Clifton-Brown, J., Trindade, L. M., van der Linden, G. C., Schwarz, K. U., Müller-Sämann, K., Anisimov, A., Chen, C. L., Dolstra, O., Donnison, I. S., Farrar, K., Fonteyne, S., Harding, G., Hastings, A., Huxley, L. M., Iqbal, Y., Khokhlov, N., Kiesel, A., Lootens, P., Meyer, H. & 11 others, Mos, M., Muylle, H., Nunn, C., Özgüven, M., Roldán-Ruiz, I., Schüle, H., Tarakanov, I., van der Weijde, T., Wagner, M., Xi, Q. & Kalinina, O., 18 Nov 2016, In : Frontiers in Plant Science. 7, 23 p., 1620.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Miscanthus
biomass production
biomass
biobased products
biogas
10 Citations (Scopus)

Quantitative resistance against Bemisia tabaci in Solanum pennellii: Genetics and metabolomics

van den Elsen, F. H. W., Lucatti, A. F., van Heusden, A. W., Broekgaarden, C., Mumm, R., Dicke, M. & Vosman, B., 2016, In : Journal of Integrative Plant Biology. 58, 4, p. 397-412

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Solanum pennellii
Solanum
Hemiptera
Metabolomics
Bemisia tabaci