Research Output 1924 2020

2017

Improving sustainability of maize to ethanol processing by plant breeding and process optimization

Slegers, P. M., Torres Salvador, A. F., van Boxtel, A. J. B. & Trindade, L. M., 2017, Proceedings of the 25th European Biomass Conference. Stockholm: EUBCE, p. 1031-1033 (European Biomass Conference and Exhibition Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference paperAcademicpeer-review

Open Access
economic impact
feedstocks
plant breeding
environmental impact
ethanol
volatile compounds
chromosome mapping
apples
texture
fruits
7 Citations (Scopus)

Key components of different plant defense pathways are dispensable for powdery mildew resistance of the arabidopsis mlo2 mlo6 mlo12 triple mutant

Kuhn, H., Lorek, J., Kwaaitaal, M., Consonni, C., Becker, K., Micali, C., Van Themaat, E. V. L., Bednarek, P., Raaymakers, T. M., Appiano, M., Bai, Y. & Feussner, I., 2017, In : Frontiers in Plant Science. 8, 1006.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
powdery mildew
Arabidopsis
mutants
transcriptomics
fungi

Local preferences of mung bean qualities for food autonomy in India

Singh, S., Singh, R., Dahiya, P. K., van Boekel, T. & Ruivenkamp, G., 17 Feb 2017, In : Development in Practice. 27, 2, p. 247-259

Research output: Contribution to journalArticleAcademicpeer-review

autonomy
India
food
connectivity
producer

New aspects of inheritance: Understanding epigenetics

Bachem, C. W. B., 15 Dec 2017

Research output: Non-textual formDigital or Visual ProductsOther research output

Open Access
Epigenomics

New developments in plant biotechnology: Targeted mutation and genome editing

Bachem, C. W. B., 15 Dec 2017

Research output: Non-textual formDigital or Visual ProductsOther research output

Open Access
biotechnology
plant development
mutation
genome

Obtaining disease resistance by changing S-genes

Schouten, H. J. & Bai, Y., 2017, In : Prophyta Annual. 2017, p. 44-45

Research output: Contribution to journalArticleProfessional

Open Access
disease resistance
genes
plant pathogens
pathogens
26 Citations (Scopus)

Partial preferential chromosome pairing is genotype dependent in tetraploid rose

Bourke, P. M., Arens, P., Voorrips, R. E., Esselink, D., Koning-Boucoiran, C. F. S., van 't Westende, W., Santos Leonardo, T., Wissink, P., Zheng, C., van Geest, G., Visser, R. G. F., Krens, F. A., Smulders, R. & Maliepaard, C., 2017, In : The Plant Journal. 90, 2, p. 330-343

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chromosome Pairing
chromosome pairing
Tetraploidy
tetraploidy
Rosa

Physiological and anatomical factors determining the water balance and hyperhydricity in Arabidopsis seedlings

Kemat, N., Visser, R. G. F., de Klerk, G. J. M. & Krens, F. A., 10 Apr 2017.

Research output: Contribution to conferencePosterAcademic

hyperhydricity
water balance
Arabidopsis
seedlings

Phytophthora resistentie in Aardappel

Lammerts Van Bueren, E., Jun 2017

Research output: Non-textual formWeb publication/site

Open Access

Plantenveredeling: Nieuwe Dimensies van Veerkracht

Lammerts van Bueren, E., 2017, Wageningen: Wageningen University & Research. 28 p.

Research output: Book/ReportReportProfessional

Open Access
44 Citations (Scopus)

Plant glutathione transferase-mediated stress tolerance: functions and biotechnological applications

Nianiou-Obeidat, I., Madesis, P., Kissoudis, C., Voulgari, G., Chronopoulou, E., Tsaftaris, A. & Labrou, N. E., 2017, In : Plant Cell Reports. 36, 6, p. 791-805

Research output: Contribution to journalArticleAcademicpeer-review

biotic stress
glutathione transferase
stress tolerance
abiotic stress
metabolic engineering
12 Citations (Scopus)

Potato starch synthases: Functions and relationships

Nazarian-Firouzabadi, F. & Visser, R. G. F., 2017, In : Biochemistry and Biophysics Reports. 10, p. 7-16

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Starch Synthase
Solanum tuberosum
Starch
Biosynthesis
Enzymes

Reduced phloem uptake of Myzus persicae on an aphid resistant pepper accession

Sun, M., Voorrips, R. E., van 't Westende, W. P. C. & Vosman, B., Jun 2017.

Research output: Contribution to conferencePosterAcademic

Resistentie tegen bladluizen in paprika

Vosman, B., Sun, M., van 't Westende, W. P. C. & Voorrips, R. E., 18 Jan 2017.

Research output: Contribution to conferencePosterAcademic

9 Citations (Scopus)

Screening for pollen tolerance to high temperatures in tomato

Paupière, M. J., van Haperen, P., Rieu, I., Visser, R. G. F., Tikunov, Y. M. & Bovy, A. G., 2017, In : Euphytica. 213, 6, 8 p., 130.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Lycopersicon esculentum
Pollen
tomatoes
pollen
screening
2 Citations (Scopus)
Open Access
Botrytis cinerea
tomatoes
potatoes
germination
lesions (plant)
16 Citations (Scopus)

Site-specific management of miscanthus genotypes for combustion and anaerobic digestion: A comparison of energy yields

Kiesel, A., Nunn, C., Iqbal, Y., Van der Weijde, T., Wagner, M., Özgüven, M., Tarakanov, I., Kalinina, O., Trindade, L. M., Clifton-Brown, J. & Lewandowski, I., 2017, In : Frontiers in Plant Science. 8, 347.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Miscanthus
anaerobic digestion
combustion
harvest date
genotype
20 Citations (Scopus)

Splicing-related genes are alternatively spliced upon changes in ambient temperatures in plants

Verhage, D. S. L., Severing, E., Bucher, J., Lammers, M., Busscher-Lange, J., Bonnema, A. B., Rodenburg, N., Proveniers, M. C. G., Angenent, G. C. & Immink, G. H., 2017, In : PLoS ONE. 12, 3, e0172950.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Recombinant DNA
alternative splicing
ambient temperature
Genes
Temperature
4 Citations (Scopus)

Stability of cell wall composition and saccharification efficiency in Miscanthus across diverse environments

van der Weijde, T., Dolstra, O., Visser, R. G. F. & Trindade, L. M., 2017, In : Frontiers in Plant Science. 7, 2004.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Miscanthus
saccharification
cell wall components
hemicellulose
biomass
13 Citations (Scopus)

Starch phosphorylation plays an important role in starch biosynthesis

Xu, X., Dees, D., Dechesne, A., Huang, X. F., Visser, R. G. F. & Trindade, L. M., 2017, In : Carbohydrate Polymers. 157, p. 1628-1637

Research output: Contribution to journalArticleAcademicpeer-review

Phosphorylation
Biosynthesis
Starch
Phosphates
Amylose

Susceptibility genes: an additional source for improved resistance

Sun, K., 2017, Wageningen: Wageningen University. 174 p.

Research output: Thesisinternal PhD, WU

Open Access
Phytophthora infestans
potatoes
Botrytis cinerea
genes
gene interaction

The effects of storage and temperature on flavor of three modern tomato varieties

Hanenberg, M. A. A., Rosales Lopez, R., Tikunov, Y. M., Bovy, A. G. & Verkerke, W., 2017. 1 p.

Research output: Contribution to conferencePosterAcademic

Open Access

Toward better data sharing methods for genebanks

Papoutsoglou, E., Kaliyaperumal, R., Van Hintum, T., Visser, R. G. F., Athanasiadis, I. N. & Finkers, R., 2017. 6 p.

Research output: Contribution to conferenceConference paperAcademicpeer-review

Open Access
Data integration
Electronic data interchange
User interfaces
Crops
Conservation
3 Citations (Scopus)

Transgenic modification of potato pectic polysaccharides also affects type and level of cell wall xyloglucan

Huang, J. H., Jiang, R., Kortstee, A., Dees, D. C. T., Trindade, L. M., Gruppen, H. & Schols, H. A., 2017, In : Journal of the Science of Food and Agriculture. 97, 10, p. 3240-3248

Research output: Contribution to journalArticleAcademicpeer-review

xyloglucans
Solanum tuberosum
Cell Wall
Polysaccharides
polysaccharides

Unraveling the genetics of Botrytis cinerea resistance in Gerbera hybrida

Fu, Y., 2017, Wageningen: Wageningen University. 159 p.

Research output: Thesisinternal PhD, WU

Open Access
Gerbera
Botrytis cinerea
Botrytis
quantitative trait loci
genes
Open Access
Agaricus bisporus
mushrooms
genetic background
chromosomes
genome
11 Citations (Scopus)

Untargeted metabolomic analysis of tomato pollen development and heat stress response

Paupière, M. J., Müller, F., Li, H., Rieu, I., Tikunov, Y. M., Visser, R. G. F. & Bovy, A. G., 2017, In : Plant Reproduction. 30, 81.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Heat-Shock Response
Metabolomics
metabolomics
Lycopersicon esculentum
Pollen

Veredelingsonderzoek naar damping-off in spinazie: Groene Veredeling Spinazie

Magnée, K., Scholten, O. E., Lammerts Van Bueren, E., Groot, S. P. C. & Postma, J., Jun 2017, 2 p. Wageningen : Wageningen University & Research.

Research output: Other contributionPamphlet

Open Access
20 Citations (Scopus)

Verticillium dahliae LysM effectors differentially contribute to virulence on plant hosts

Kombrink, A., Rovenich, H., Shi, X., Rojas-Padilla, E., van den Berg-Velthuis, G., Domazakis, E., De Jonge, R., Valkenburg, D-J., Sánchez-Vallet, A., Seidl, M. F. & Thomma, B. P. H. J., 2017, In : Molecular Plant Pathology. 18, 4, p. 596-608

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Verticillium
Verticillium dahliae
virulence
host plant
Chitin

Voorwoord

Lammerts Van Bueren, E., 2017, Van exclusieve naar inclusieve efficiëntie: Verslag van het symposium “Efficiëntie in de landbouw van de 21e eeuw” op 9 juni 2017 in Ede. Jetten, T. H. & van der Weijden, W. J. (eds.). Wageningen: Wageningen University & Research, p. 3-3

Research output: Chapter in Book/Report/Conference proceedingForeword/postscriptAcademic

Open Access
Open Access
2016
4 Citations (Scopus)

Adapting spring wheat breeding to the needs of the organic sector

Osman, A. M., Almekinders, C. J. M., Struik, P. C. & Lammerts van Bueren, E. T., 2016, In : NJAS Wageningen Journal of Life Sciences. 76, p. 55-63

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Bread
spring wheat
Triticum
Breeding
weed
17 Citations (Scopus)

A detailed analysis of the recombination landscape of the button mushroom Agaricus bisporus var. bisporus

Sonnenberg, A. S. M., Gao, W., Lavrijssen, B., Hendrickx, P., Sedaghat-Tellgerd, N., Foulongne-Oriol, M., Kong, W-S., Schijlen, E. G. W. M., Baars, J. J. P. & Visser, R. G. F., 2016, In : Fungal Genetics and Biology. 93, p. 35-45

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Agaricus
Agaricales
Spores
Genetic Recombination
Genome

Advantageous effects of mild abiotic stresses in lily cultured in vitro

Askari, N., Visser, R. G. F. & de Klerk, G. J., 2016, In : Propagation of ornamental plants. 16, 4, p. 130-136

Research output: Contribution to journalArticleAcademicpeer-review

Lilium
abiotic stress
air
plantlets
water stress

Adventitious root formation in Arabidopsis: underlying mechanisms and applications

Massoumi, M., 2016, Wageningen: Wageningen University. 191 p.

Research output: Thesisinternal PhD, WU

Open Access
adventitious roots
rooting
Arabidopsis
DNA methylation
auxins
29 Citations (Scopus)

A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species

Di Pierro, E. A., Gianfranceschi, L., Di Guardo, M., Koehorst-Van Putten, H. J. J., Kruisselbrink, J. W., Longhi, S., Troggio, M., Bianco, L., Muranty, H., Pagliarani, G., Bink, M. C. A. M., Voorrips, R. E. & van de Weg, E., 2016, In : Horticulture Research. 3, 16057.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Malus
outcrossing
Polymorphism
single nucleotide polymorphism
Single Nucleotide Polymorphism
2 Citations (Scopus)

Alteration of cell wall polysaccharides through transgenic expression of UDP-Glc 4-epimerase-encoding genes in potato tubers

Huang, J. H., Kortstee, A., Dees, D. C. T., Trindade, L. M., Schols, H. A. & Gruppen, H., 2016, In : Carbohydrate Polymers. 146, p. 337-344

Research output: Contribution to journalArticleAcademicpeer-review

UDPglucose 4-Epimerase
Racemases and Epimerases
Gene encoding
Uridine Diphosphate
Polysaccharides
10 Citations (Scopus)
Open Access
Phytophthora infestans
Fuzzy systems
Fungicides
disease control
Disease control
113 Citations (Scopus)

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Jiang, Y., Oron, T. R., Clark, W. T., Bankapur, A. R., D'Andrea, D., Lepore, R., Funk, C. S., Kahanda, I., Verspoor, K. M., Ben-Hur, A., Koo, D. C. E., Penfold-Brown, D., Shasha, D., Youngs, N., Bonneau, R., Lin, A., Sahraeian, S. M. E., Martelli, P. L., Profiti, G., Casadio, R. & 127 others, Cao, R., Zhong, Z., Cheng, J., Altenhoff, A., Skunca, N., Dessimoz, C., Dogan, T., Hakala, K., Kaewphan, S., Mehryary, F., Salakoski, T., Ginter, F., Fang, H., Smithers, B., Oates, M., Gough, J., Törönen, P., Koskinen, P., Holm, L., Chen, C. T., Hsu, W. L., Bryson, K., Cozzetto, D., Minneci, F., Jones, D. T., Chapman, S., BKC, D., Khan, I. K., Kihara, D., Ofer, D., Rappoport, N., Stern, A., Cibrian-Uhalte, E., Denny, P., Foulger, R. E., Hieta, R., Legge, D., Lovering, R. C., Magrane, M., Melidoni, A. N., Mutowo-Meullenet, P., Pichler, K., Shypitsyna, A., Li, B., Zakeri, P., ElShal, S., Tranchevent, L. C., Das, S., Dawson, N. L., Lee, D., Lees, J. G., Sillitoe, I., Bhat, P., Nepusz, T., Romero, A. E., Sasidharan, R., Yang, H., Paccanaro, A., Gillis, J., Sedeño-Cortés, A. E., Pavlidis, P., Feng, S., Cejuela, J. M., Goldberg, T., Hamp, T., Richter, L., Salamov, A., Gabaldon, T., Marcet-Houben, M., Supek, F., Gong, Q., Ning, W., Zhou, Y., Tian, W., Falda, M., Fontana, P., Lavezzo, E., Toppo, S., Ferrari, C., Giollo, M., Piovesan, D., Tosatto, S. C. E., del Pozo, A., Fernández, J. M., Maietta, P., Valencia, A., Tress, M. L., Benso, A., Di Carlo, S., Politano, G., Savino, A., Rehman, H. U., Re, M., Mesiti, M., Valentini, G., Bargsten, J. W., van Dijk, A-J., Gemovic, B., Glisic, S., Perovic, V., Veljkovic, V., Veljkovic, N., Almeida-e-Silva, D. C., Vencio, R. Z. N., Sharan, M., Vogel, J., Kansakar, L., Zhang, S., Vucetic, S., Wang, Z., Sternberg, M. J. E., Wass, M. N., Huntley, R. P., Martin, M. J., O'Donovan, C., Robinson, P. N., Moreau, Y., Tramontano, A., Babbitt, P. C., Brenner, S. E., Linial, M., Orengo, C. A., Rost, B., Greene, C. S., Mooney, S. D., Friedberg, I. & Radivojac, P., 2016, In : Genome Biology. 17, 1, 184.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
protein
prediction
Proteins
proteins
methodology
17 Citations (Scopus)

A novel Zn2Cys6 transcription factor BcGaaR regulates D-galacturonic acid utilization in Botrytis cinerea

Zhang, L., Lubbers, R. J. M., Simon, A., Stassen, J. H. M., Vargas Ribera, P. R., Viaud, M. & van Kan, J. A. L., 2016, In : Molecular Microbiology. 100, 2, p. 247-262

Research output: Contribution to journalArticleAcademicpeer-review

Botrytis
Transcription Factors
Fungi
Ascomycota
Neurospora crassa

Aspects of bulblet growth of lily in vitro

Askari Rabori, N., 2016, Wageningen: Wageningen University. 130 p.

Research output: Thesisinternal PhD, WU

Open Access
Lilium
explants
carbon dioxide
headspace analysis
bulbs
12 Citations (Scopus)

A Systems genetics approach identifies gene regulatory networks associated with fatty acid composition in brassica rapa seed

Basnet, R. K., Pino Del Carpio, D., Xiao, D., Bucher, J., Jin, M., Boyle, K., Fobert, P., Visser, R. G. F., Maliepaard, C. & Bonnema, G., 2016, In : Plant Physiology. 170, 1, p. 568-585

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Brassica rapa
Gene Regulatory Networks
Seeds
Fatty Acids
fatty acid composition
19 Citations (Scopus)
blue light
red light
stomatal conductance
lighting
tomatoes
4 Citations (Scopus)

Characterization and Transcriptional Profile of Genes Involved in Glycoalkaloid Biosynthesis in New Varieties of Solanum tuberosum L.

Mariot, R. F., De Oliveira, L. A., Voorhuijzen, M. M., Staats, M., Hutten, R. C. B., Van Dijk, J. P., Kok, E. J. & Frazzon, J., 2016, In : Journal of Agricultural and Food Chemistry. 64, 4, p. 988-996

Research output: Contribution to journalArticleAcademicpeer-review

glycoalkaloids
Biosynthesis
new variety
Solanum tuberosum
Genes
10 Citations (Scopus)

Characterization of low-strigolactone germplasm in pea (Pisum sativum L.) resistant to crenate broomrape (Orobanche crenata Forsk.)

Pavan, S., Schiavulli, A., Marcotrigiano, A. R., Bardaro, N., Bracuto, V., Ricciardi, F., Charnikhova, T., Lotti, C., Bouwmeester, H. & Ricciardi, L., 2016, In : Molecular Plant-Microbe Interactions. 29, 10, p. 743-749

Research output: Contribution to journalArticleAcademicpeer-review

Orobanche
Orobanche crenata
Peas
Pisum sativum
peas
2 Citations (Scopus)

Comparison and analysis of Wuding and avian chicken skeletal muscle satellite cells

Tong, H. Q., Jiang, Z. Q., Dou, T. F., Li, Q. H., Xu, Z. Q., Liu, L. X., Gu, D. H., Rong, H., Huang, Y., Chen, X. B., Jois, M., te Pas, M. F. W., Ge, C. R. & Jia, J. J., 2016, In : Genetics and Molecular Research. 15, 4

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Skeletal Muscle Satellite Cells
Chickens
Insulin-Like Growth Factor I
Muscles
Breeding
6 Citations (Scopus)

Cytogenetic diversity of simple sequences repeats in morphotypes of Brassica rapa ssp. Chinensis

Zheng, J. S., Sun, C. Z., Zhang, S. N., Hou, X. L. & Bonnema, G., 26 Jul 2016, In : Frontiers in Plant Science. 7, JULY2016, 1049.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Brassica rapa
cytogenetics
microsatellite repeats
nucleotides
heterochromatin
39 Citations (Scopus)

Detecting QTLs and putative candidate genes involved in budbreak and flowering time in an apple multiparental population

Allard, A., Bink, M. C. A. M., Martinez, S., Kelner, J. J., Legave, J. M., Di Guardo, M., Di Pierro, E. A., Laurens, F., Van De Weg, E. W. & Costes, E., 2016, In : Journal of Experimental Botany. 67, 9, p. 2875-2888

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genetic Determinism
budbreak
Malus
quantitative trait loci
apples

Development and application of a 20K SNP array in potato

Vos, P., 2016, Wageningen: Wageningen University. 166 p.

Research output: Thesisinternal PhD, WU

Open Access
linkage disequilibrium
single nucleotide polymorphism
potatoes
deterioration
population structure