Research Output 1924 2020

2020

Aphid resistance in Capsicum maps to a locus containing LRR-RLK gene analogues

Sun, M., Voorrips, R. E., van’t Westende, W., van Kaauwen, M., Visser, R. G. F. & Vosman, B., Jan 2020, In : Theoretical and Applied Genetics. 133, 1, p. 227-237

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Capsicum
Aphids
Aphidoidea
quantitative trait loci
loci

Carbon partitioning mechanisms in POTATO under drought stress

Aliche, E. B., Theeuwen, T. P. J. M., Oortwijn, M., Visser, R. G. F. & van der Linden, G., 1 Jan 2020, In : Plant Physiology and Biochemistry. 146, p. 211-219 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Droughts
water stress
Carbon
Solanum tuberosum
potatoes

RG-I galactan side-chains are involved in the regulation of the water-binding capacity of potato cell walls

Klaassen, M. T. & Trindade, L. M., 1 Jan 2020, In : Carbohydrate Polymers. 227, 115353.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Galactans
Cells
Water
Polysaccharides
Byproducts

The ability to manipulate ROS metabolism in pepper may affect aphid virulence

Sun, M., Voorrips, R. E., van Kaauwen, M., Visser, R. G. F. & Vosman, B., 1 Dec 2020, In : Horticulture Research. 7, 1, 6.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Aphids
sweet peppers
Metabolism
Virulence
Aphidoidea
2019
4 Citations (Scopus)

Agricultural nitrogen and phosphorus emissions to water and their mitigation options in the Haihe Basin, China

Zhao, Z., Qin, W., Bai, Z. & Ma, L., 1 Feb 2019, In : Agricultural Water Management. 212, p. 262-272

Research output: Contribution to journalArticleAcademicpeer-review

mitigation
basins
phosphorus
China
nitrogen
Open Access
potato
genetic variation
cultivar
canopy
potatoes
1 Citation (Scopus)
Open Access
tuber
resource use
potato
genetic variation
cultivar
Disease control
disease control
potato
Decision making
decision making

A rapid method to screen wild Solanum for resistance to early blight

Wolters, P. J., de Vos, L., Bijsterbosch, G., Woudenberg, J. H. C., Visser, R. G. F., van der Linden, G. & Vleeshouwers, V. G. A. A., May 2019, In : European Journal of Plant Pathology. 154, 1, p. 109-114

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Solanum
blight
rapid methods
genotype
breeding
3 Citations (Scopus)

A template framework for environmental timeseries data acquisition

Samourkasidis, A., Papoutsoglou, E. & Athanasiadis, I. N., 1 Jul 2019, In : Environmental Modelling and Software. 117, p. 237-249

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
data acquisition
Data acquisition
Data integration
Syntactics
Meteorology

Author Correction: Climatic controls of decomposition drive the global biogeography of forest-tree symbioses

28 Jun 2019, In : Nature. 571, 7765, E8.

Research output: Contribution to journalComment/Letter to the editorAcademic

Symbiosis
Equipment and Supplies
Databases
Forestry
Ecology

Biologisch zaad: Waar komen we vandaan en waar willen we heen?

Lammerts Van Bueren, E., 2019, In : Dynamisch Perspectief. 2, p. 26-29

Research output: Contribution to journalArticleProfessional

Open Access
4 Citations (Scopus)

BrAPI-an application programming interface for plant breeding applications

Selby, P., Abbeloos, R., Backlund, J. E., Basterrechea Salido, M., Bauchet, G., Benites-Alfaro, O. E., Birkett, C., Calaminos, V. C., Carceller, P., Cornut, G., Vasques Costa, B., Edwards, J. D., Finkers, R., Yanxin Gao, S., Ghaffar, M., Glaser, P., Guignon, V., Hok, P., Kilian, A., König, P. & 30 others, Lagare, J. E. B., Lange, M., Laporte, M. A., Larmande, P., LeBauer, D. S., Lyon, D. A., Marshall, D. S., Matthews, D., Milne, I., Mistry, N., Morales, N., Mueller, L. A., Neveu, P., Papoutsoglou, E., Pearce, B., Perez-Masias, I., Pommier, C., Ramírez-González, R. H., Rathore, A., Raquel, A. M., Raubach, S., Rife, T., Robbins, K., Rouard, M., Sarma, C., Scholz, U., Sempéré, G., Shaw, P. D., Simon, R. & Verouden, M., 15 Oct 2019, In : Bioinformatics (Oxford, England). 35, 20, p. 4147-4155

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Application programming interfaces (API)
Breeding
Programming
Specifications
Specification

Breeding crops with resistance to diseases and pests

Niks, R. E., Parlevliet, J. E., Lindhout, P. & Bai, Y., 2019, Wageningen: Wageningen Academic Publishers. 204 p.

Research output: Book/ReportBookAcademic

plant breeding
pathotypes
pests
students
plant breeders
13 Citations (Scopus)

Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar

Clifton-Brown, J., Harfouche, A., Casler, M. D., Dylan Jones, H., Macalpine, W. J., Murphy-Bokern, D., Smart, L. B., Adler, A., Ashman, C., Awty-Carroll, D., Bastien, C., Bopper, S., Botnari, V., Brancourt-Hulmel, M., Chen, Z., Clark, L. V., Cosentino, S., Dalton, S., Davey, C., Dolstra, O. & 30 others, Donnison, I., Flavell, R., Greef, J., Hanley, S., Hastings, A., Hertzberg, M., Hsu, T. W., Huang, L. S., Iurato, A., Jensen, E., Jin, X., Jørgensen, U., Kiesel, A., Kim, D. S., Liu, J., McCalmont, J. P., McMahon, B. G., Mos, M., Robson, P., Sacks, E. J., Sandu, A., Scalici, G., Schwarz, K., Scordia, D., Shafiei, R., Shield, I., Slavov, G., Stanton, B. J., Swaminathan, K. & Trindade, L. M., Jan 2019, In : GCB Bioenergy. 11, 1, p. 118-151

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Miscanthus
Panicum virgatum
energy crops
Crops
Biomass
Open Access
Open Access
Solanum tuberosum subsp. andigenum
Solanum tuberosum
potatoes
Light
scotophase
2 Citations (Scopus)
Open Access
warts
Warts
Disease Resistance
Pedigree
Solanum tuberosum

Convergent evolution of hetero-oligomeric cellulose synthesis complexes in mosses and seed plants

Li, X., Speicher, T. L., Dees, D. C. T., Mansoori, N., McManus, J. B., Tien, M., Trindade, L. M., Wallace, I. S. & Roberts, A. W., 25 Apr 2019, In : Plant Journal.

Research output: Contribution to journalArticleAcademicpeer-review

Bryophyta
convergent evolution
Spermatophytina
Cellulose
mosses and liverworts

Correction to: Molecular characterization of Ecuadorian quinoa (Chenopodium quinoa Willd.) diversity: implications for conservation and breeding

Salazar, J., Roman, V. J., Gutierrez, B., van Loo, E. N., de Lourdes Torres, M. & Torres, A. F., 25 Nov 2019, In : Euphytica. 215, 12, 209.

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access
Chenopodium quinoa
Ecuador
Breeding
San Francisco
breeding
1 Citation (Scopus)

CRISPR/Cas inactivation of RECQ4 increases homeologous crossovers in an interspecific tomato hybrid

de Maagd, R. A., Loonen, A., Chouaref, J., Pelé, A., Meijer-Dekens, F., Fransz, P. & Bai, Y., 4 Sep 2019, In : Plant Biotechnology Journal.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
Lycopersicon esculentum
inactivation
tomatoes
wild relatives
Open Access
1 Citation (Scopus)

Development of an in vitro protocol to screen Clavibacter michiganensis subsp. michiganensis pathogenicity in different Solanum species.

Mohd Nadzir, M. M., Vieira Lelis, F., Thapa, B., Ali, A., Visser, R. G. F., van Heusden, A. W. & van der Wolf, J. M., Jan 2019, In : Plant Pathology. 68, 1, p. 42-48

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Clavibacter michiganensis subsp. michiganensis
Solanum
Lycopersicon esculentum
Virulence
pathogenicity
1 Citation (Scopus)

Development of the GlutEnSeq capture system for sequencing gluten gene families in hexaploid bread wheat with deletions or mutations induced by γ-irradiation or CRISPR/Cas9

Jouanin, A., Borm, T., Boyd, L. A., Cockram, J., Leigh, F., Santos, B. A. C. M., Visser, R. G. F. & Smulders, M. J. M., 1 Jul 2019, In : Journal of Cereal Science. 88, p. 157-166 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
Glutens
Sequence Deletion
Bread
hexaploidy
Open Access

Editorial: Organ Modification for Edible Parts of Horticultural Crops

He, Y., Bonnema, G., Xiao, H. & Zhao, Y., 23 Jul 2019, In : Frontiers in Plant Science. 10, 961.

Research output: Contribution to journalEditorialAcademic

Open Access
1 Citation (Scopus)

Exogenous γ-aminobutyric acid treatment improves the cold tolerance of zucchini fruit during postharvest storage

Palma, F., Carvajal, F., Jiménez-Muñoz, R., Pulido, A., Jamilena, M. & Garrido, D., 1 Mar 2019, In : Plant Physiology and Biochemistry. 136, p. 188-195

Research output: Contribution to journalArticleAcademicpeer-review

Aminobutyrates
zucchini
gamma-aminobutyric acid
acid treatment
cold tolerance

Exploring the treasure of plant molecules with integrated biorefineries

Torres, A. F., Xu, X., Nikiforidis, C. V., Bitter, J. H. & Trindade, L. M., 16 Apr 2019, In : Frontiers in Plant Science. 10, 478.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
biorefining
biomass
synthesis
biobased products
commercialization

Family-based haplotype estimation and allele dosage correction for polyploids using short sequence reads

Motazedi, E., Maliepaard, C., Finkers, R., Visser, R. & De Ridder, D., 16 Apr 2019, In : Frontiers in Genetics. 10, MAR, 335.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Polyploidy
Haplotypes
Alleles
Genotype
Population

Far-red radiation increases dry mass partitioning to fruits but reduces Botrytis cinerea resistance in tomato

Ji, Y., Ouzounis, T., Courbier, S., Kaiser, E., Nguyen, P. T., Schouten, H. J., Visser, R. G. F., Pierik, R., Marcelis, L. F. M. & Heuvelink, E., 1 Dec 2019, In : Environmental and Experimental Botany. 168, 103889.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Botrytis cinerea
partitioning
fruit
tomatoes
fruits

FitTetra 2.0 - Improved genotype calling for tetraploids with multiple population and parental data support

Zych, K., Gort, G., Maliepaard, C. A., Jansen, R. C. & Voorrips, R. E., 20 Mar 2019, In : BMC Bioinformatics. 20, 1, 148.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
Genotype
Software
Population
Proportion
1 Citation (Scopus)

Food and environmental safety assessment of new plant varieties after the European Court decision: Process-triggered or product-based?

Kok, E. J., Glandorf, D. C. M., Prins, T. W. & Visser, R. G. F., 1 Jun 2019, In : Trends in Food Science and Technology. 88, p. 24-32 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
safety assessment
Food Safety
Jurisprudence
plant breeding
breeding methods

From metagenome to gene: Identification of the first Synchytrium endobioticum effector through comparative genomics

van de Vossenberg, B. T. L. H., 2019, Wageningen: Wageningen University. 290 p.

Research output: Thesisinternal PhD, WU

Open Access

Gene editing towards hypoimmunogenic gluten proteins in wheat

Jouanin, A. A., 2019, Wageningen: Wageningen University. 212 p.

Research output: Thesisinternal PhD, WU

Genetic analysis of fruit quality in tomato

Roohanitaziani, R., 2019, Wageningen: Wageningen University. 194 p.

Research output: Thesisinternal PhD, WU

2 Citations (Scopus)

Genetic dissection of flowering time in Brassica rapa responses to temperature and photoperiod

Xiao, D., Shen, H. R., Zhao, J. J., Wei, Y. P., Liu, D. R., Hou, X. L. & Bonnema, G., 1 Mar 2019, In : Plant Science. 280, p. 110-119

Research output: Contribution to journalArticleAcademicpeer-review

Brassica rapa
Photoperiod
Dissection
photoperiod
flowering

Genetic Diversity of Potato Cultivars for Nitrogen Use Efficiency Under Contrasting Nitrogen Regimes

Getahun, B. B., Kassie, M. M., Visser, R. G. F. & van der Linden, G., 14 Oct 2019, In : Potato Research.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
nutrient use efficiency
Solanum tuberosum
Nitrogen
potatoes
canopy

Genetic mapping of tuber size distribution and marketable tuber yield under drought stress in potatoes

Aliche, E. B., Oortwijn, M., Theeuwen, T. P. J. M., Bachem, C. W. B., van Eck, H. J., Visser, R. G. F. & van der Linden, G., 1 Oct 2019, In : Euphytica. 215, 11, 186.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Droughts
Solanum tuberosum
chromosome mapping
tubers
water stress

Genetics and Breeding of Lupinus mutabilis: An Emerging Protein Crop

Gulisano, A., Alves, S., Martins, J. N. & Trindade, L. M., 30 Oct 2019, In : Frontiers in Plant Science. 10, 1385.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Lupinus mutabilis
breeding
crops
proteins
low input agriculture
Open Access
Tetraploidy
Quantitative Trait Loci
Genome-Wide Association Study
Solanum tuberosum
tetraploidy
4 Citations (Scopus)

Genome-Wide association studies in apple reveal loci for aroma volatiles, sugar composition, and harvest Date

Larsen, B., Migicovsky, Z., Jeppesen, A. A., Gardner, K. M., Toldam-Andersen, T. B., Myles, S., Ørgaard, M., Petersen, M. A. & Pedersen, C., 1 Jun 2019, In : Plant Genome. 12, 2, 180104.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome-Wide Association Study
harvest date
Malus
single nucleotide polymorphism
Single Nucleotide Polymorphism

Genome-wide transcriptome analysis reveals molecular pathways involved in leafy head formation of Chinese cabbage (Brassica rapa)

Sun, X. X., Basnet, R. K., Yan, Z., Bucher, J., Cai, C., Zhao, J. & Bonnema, G., 1 Dec 2019, In : Horticulture Research. 6, 1, 130.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Brassica rapa
Chinese cabbage
Brassica
Gene Expression Profiling
transcriptomics

Geometric cues forecast the switch from two- to three-dimensional growth in Physcomitrella patens

Tang, H., Duijts, K., Bezanilla, M., Scheres, B., Vermeer, J. E. M. & Willemsen, V., 22 Oct 2019, In : New Phytologist.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Bryopsida
Physcomitrella patens
Cues
gametophores
Growth

Glucosinolate variability between turnip organs during development

Bonnema, G., Lee, J. G., Shuhang, W., Lagarrigue, D., Bucher, J., Wehrens, R., De Vos, R. & Beekwilder, J., 1 Jun 2019, In : PLoS ONE. 14, 6, e0217862.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Glucosinolates
Brassica napus
turnips
glucosinolates
tubers

Haplotype assembly of autotetraploid potato using integer linear programing

Siragusa, E., Haiminen, N., Finkers, R., Visser, R. & Parida, L., 15 Sep 2019, In : Bioinformatics (Oxford, England). 35, 18, p. 3279-3286 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Linear Programming
Haplotype
Potato
Solanum tuberosum
Haplotypes

Haplotype estimation in polyploids using DNA sequence data

Motazedi, E., 2019, Wageningen: Wageningen University. 153 p.

Research output: Thesisinternal PhD, WU

Open Access
Open Access
Solanum arcanum
plant growth
sucrose
leaf area
temperature

High-density mapping of triple rust resistance in barley using DArT-seq markers

Dracatos, P. M., Haghdoust, R., Singh, R. P., Huerta Espino, J., Barnes, C. W., Forrest, K., Hayden, M., Niks, R. E., Park, R. F. & Singh, D., 16 Apr 2019, In : Frontiers in Plant Science. 10, 467.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
leaf rust
Puccinia hordei
barley
quantitative trait loci
stem rust