Research Output 2011 2019

Filter
Article
2019
4 Citations (Scopus)

Genetic variation in phytochemicals in leaves of pepper (Capsicum) in relation to thrips resistance

Maharijaya, A., Vosman, B., Pelgrom, K., Wahyuni, Y., de Vos, R. C. H. & Voorrips, R. E., Feb 2019, In : Arthropod-Plant Interactions. 13, 1, p. 1-9

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
thrips
Capsicum
sweet peppers
Thysanoptera
phytopharmaceuticals
4 Citations (Scopus)

QTL mapping of insect resistance components of Solanum galapagense

Vosman, B., Kashaninia, A., van’t Westende, W., Meijer-Dekens, F., van Eekelen, H., Visser, R. G. F., de Vos, R. C. H. & Voorrips, R. E., Feb 2019, In : Theoretical and Applied Genetics. 132, 2, p. 531–541

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Solanum galapagense
Trichomes
Solanum
trichomes
Insects
1 Citation (Scopus)

The effect of plant development on thrips resistance in Capsicum

van Haperen, P., Voorrips, R. E., van Loon, J. J. A. & Vosman, B., Feb 2019, In : Arthropod-Plant Interactions. 13, 1, p. 11–18

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
thrips
Capsicum
Thysanoptera
plant development
leaves
2018
33 Citations (Scopus)

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits

Hibrand Saint-Oyant, L., Ruttink, T., Hamama, L., Kirov, I., Lakhwani, D., Zhou, N. N., Bourke, P. M., Daccord, N., Leus, L., Schulz, D., van de Geest, H., Hesselink, T., Van Laere, K., Debray, K., Balzergue, S., Thouroude, T., Chastellier, A., Jeauffre, J., Voisine, L., Gaillard, S. & 21 others, Borm, T. J. A., Arens, P., Voorrips, R. E., Maliepaard, C., Neu, E., Linde, M., Le Paslier, M. C., Bérard, A., Bounon, R., Clotault, J., Choisne, N., Quesneville, H., Kawamura, K., Aubourg, S., Sakr, S., Smulders, M. J. M., Schijlen, E., Bucher, E., Debener, T., De Riek, J. & Foucher, F., 2018, In : Nature Plants. 4, p. 473-484

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Rosa chinensis
Rosa
genome
plant spines
doubled haploids
9 Citations (Scopus)
Open Access
Solanum galapagense
Lycopersicon esculentum
Trichomes
Insects
Solanum

Combining QTL mapping with transcriptome and metabolome profiling reveals a possible role for ABA signaling in resistance against the cabbage whitefly in cabbage

Broekgaarden, C., Pelgrom, K. T. B., Bucher, J., van Dam, N. M., Grosser, K., Pieterse, C. M. J., van Kaauwen, M., Steenhuis, G., Voorrips, R. E., de Vos, M., Vosman, B., Worrich, A. & van Wees, S. C. M., 6 Nov 2018, In : PLoS ONE. 13, 11, e0206103.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
metabolome
Abscisic Acid
Hemiptera
Metabolome
Brassica

Designing plant varieties with information technology

Visser, R. G. F. & Finkers, H. J., 2018, In : Prophyta - Focus on Europe. p. 28-30

Research output: Contribution to journalArticleProfessional

Open Access
Bioinformatics
Information technology
6 Citations (Scopus)

Efficient algorithms for polyploid haplotype phasing

He, D., Saha, S., Finkers, R. & Parida, L., 9 May 2018, In : BMC Genomics. 19, Supplement 2, 110.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Polyploidy
Haplotypes
Diploidy
11 Citations (Scopus)

Exploiting next-generation sequencing to solve the haplotyping puzzle in polyploids: a simulation study

Motazedi, E., Finkers, H. J., Maliepaard, C. A. & de Ridder, D., May 2018, In : Briefings in Bioinformatics. 19, 3, p. 387-403

Research output: Contribution to journalArticleAcademicpeer-review

Polyploidy
Nucleotides
Haplotypes
Ploidies
Polymorphism
2 Citations (Scopus)

Exploring natural genetic variation in tomato sucrose synthases on the basis of increased kinetic properties

Dinh, Q. D., Finkers, R., Westphal, A. H., van Dongen, W. M. A. M., Visser, R. G. F. & Trindade, L. M., 29 Oct 2018, In : PLoS ONE. 13, 10, e0206636.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
sucrose synthase
Lycopersicon esculentum
Haplotypes
Sucrose
haplotypes
7 Citations (Scopus)

Multi-environment QTL analysis of plant and flower morphological traits in tetraploid rose

Bourke, P. M., Gitonga, V. W., Voorrips, R. E., Visser, R. G. F., Krens, F. A. & Maliepaard, C., Oct 2018, In : Theoretical and Applied Genetics. 131, 10, p. 2055–2069

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
Quantitative Trait Loci
tetraploidy
quantitative trait loci
Rosa
9 Citations (Scopus)

PolymapR-linkage analysis and genetic map construction from F1 populations of outcrossing polyploids

Bourke, P. M., van Geest, G., Voorrips, R. E., Jansen, J., Kranenburg, T., Shahin, A., Visser, R. G. F., Arens, P., Smulders, M. J. M. & Maliepaard, C., 15 Oct 2018, In : Bioinformatics. 34, 20, p. 3496-3502

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Linkage Analysis
Genetic Linkage
Polyploidy
Chrysanthemum
Crops
2 Citations (Scopus)

QTLTableMiner++: Semantic mining of QTL tables in scientific articles

Singh, G., Kuzniar, A., van Mulligen, E. M., Gavai, A., Bachem, C. W., Visser, R. G. F. & Finkers, R., 25 May 2018, In : BMC Bioinformatics. 19, 183.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Quantitative Trait Loci
Semantics
Ontology
Tables
Mining
5 Citations (Scopus)

Reduced phloem uptake of Myzus persicae on an aphid resistant pepper accession

Sun, M., Voorrips, R. E., Steenhuis-Broers, G., van't Westende, W. & Vosman, B., 27 Jun 2018, In : BMC Plant Biology. 18, 1, 138.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Myzus persicae
pepper
phloem
Aphidoidea
uptake mechanisms
19 Citations (Scopus)

Tools for Genetic Studies in Experimental Populations of Polyploids

Bourke, P. M., Voorrips, R. E., Visser, R. G. F. & Maliepaard, C. A., 18 Apr 2018, In : Frontiers in Plant Science. 9, 513.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
polyploidy
inheritance (genetics)
chromosome mapping
alleles
chromosomes
2 Citations (Scopus)

TriPoly: haplotype estimation for polyploids using sequencing data of related individuals

Motazedi, E., de Ridder, D., Finkers, R., Baldwin, S., Thomson, S., Monaghan, K. & Maliepaard, C., 15 Nov 2018, In : Bioinformatics. 34, 22, p. 3864-3872

Research output: Contribution to journalArticleAcademicpeer-review

Polyploidy
Haplotype
Haplotypes
Sequencing
Chromosomes
2017
17 Citations (Scopus)

An ultra-dense integrated linkage map for hexaploid chrysanthemum enables multi-allelic QTL analysis

van Geest, G., Bourke, P. M., Voorrips, R. E., Marasek-Ciolakowska, A., Liao, Y., Post, A., van Meeteren, U., Visser, R. G. F., Maliepaard, C. & Arens, P., Dec 2017, In : Theoretical and Applied Genetics. 130, 12, p. 2527-2541

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chrysanthemum
hexaploidy
Lettuce
chromosome mapping
quantitative trait loci
14 Citations (Scopus)

Conclusive evidence for hexasomic inheritance in chrysanthemum based on analysis of a 183 k SNP array

van Geest, G., Voorrips, R. E., Esselink, D., Post, A., Visser, R. G. F. & Arens, P., 2017, In : BMC Genomics. 18, 585.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chrysanthemum
Single Nucleotide Polymorphism
RNA Sequence Analysis
Alleles
Genotype
28 Citations (Scopus)

Evaluation of LD decay and various LD-decay estimators in simulated and SNP-array data of tetraploid potato

Vos, P. G., Paulo, M. J., Voorrips, R. E., Visser, R. G. F., van Eck, H. J. & van Eeuwijk, F. A., 2017, In : Theoretical and Applied Genetics. 130, 1, p. 123-135

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
Linkage Disequilibrium
Solanum tuberosum
linkage disequilibrium
tetraploidy
49 Citations (Scopus)

Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping

Thoen, H. P. M., Davila Olivas, N. H., Kloth, K. J., Coolen, S., Huang, P., Aarts, M. G. M., Molenaar, J. A., Bakker, J., Bouwmeester, H. J., Broekgaarden, C., Bucher, J., Busscher-Lange, J., Cheng, X., van Dijk-Fradin, E. F., Jongsma, M. A., Julkowska, M. M., Keurentjes, J. J. B., Ligterink, W., Pieterse, C. M. J., Ruyter-Spira, C. P. & 13 others, Smant, G., van Schaik, C. C., van Wees, S. C. M., Visser, R. G. F., Voorrips, R. E., Vosman, B., Vreugdenhil, D., Warmerdam, S., Wiegers, G. L., van Heerwaarden, J., Kruijer, W. T., van Eeuwijk, F. A. & Dicke, M., 2017, In : New Phytologist. 213, 3, p. 1346-1362

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
plant stress
stress tolerance
chromosome mapping
Genome
single nucleotide polymorphism
11 Citations (Scopus)

Genetic structure of a QTL hotspot on chromosome 2 in sweet cherry indicates positive selection for favorable haplotypes

Cai, L., Voorrips, R. E., van de Weg, E., Peace, C. & Iezzoni, A., 2017, In : Molecular Breeding. 37, 7, 10 p., 85.

Research output: Contribution to journalArticleAcademicpeer-review

Chromosomes, Human, Pair 2
Genetic Structures
Quantitative Trait Loci
Prunus avium
Haplotypes
11 Citations (Scopus)

Genome-wide association analysis for lodging tolerance and plant height in a diverse European hexaploid oat collection

Tumino, G., Voorrips, R. E., Morcia, C., Ghizzoni, R., Germeier, C. U., Caldas Paulo, J., Terzi, V. & Smulders, M. J. M., 2017, In : Euphytica. 213, 8, 163.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome-Wide Association Study
lodging
hexaploidy
oats
Single Nucleotide Polymorphism
26 Citations (Scopus)

Partial preferential chromosome pairing is genotype dependent in tetraploid rose

Bourke, P. M., Arens, P., Voorrips, R. E., Esselink, D., Koning-Boucoiran, C. F. S., van 't Westende, W., Santos Leonardo, T., Wissink, P., Zheng, C., van Geest, G., Visser, R. G. F., Krens, F. A., Smulders, R. & Maliepaard, C., 2017, In : The Plant Journal. 90, 2, p. 330-343

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chromosome Pairing
chromosome pairing
Tetraploidy
tetraploidy
Rosa
2016
28 Citations (Scopus)

A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species

Di Pierro, E. A., Gianfranceschi, L., Di Guardo, M., Koehorst-Van Putten, H. J. J., Kruisselbrink, J. W., Longhi, S., Troggio, M., Bianco, L., Muranty, H., Pagliarani, G., Bink, M. C. A. M., Voorrips, R. E. & van de Weg, E., 2016, In : Horticulture Research. 3, 16057.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Malus
outcrossing
Polymorphism
single nucleotide polymorphism
Single Nucleotide Polymorphism
3 Citations (Scopus)

Antibiosis resistance against larval cabbage root fly, Delia radicum, in wild Brassica-species

Wang, S., Voorrips, R. E., Steenhuis-Broers, G., Vosman, B. & van Loon, J. J. A., 1 Jun 2016, In : Euphytica. 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Antibiosis
Delia radicum
antibiosis
Brassica
Diptera
14 Citations (Scopus)

Genome-wide association analysis of the anthocyanin and carotenoid contents of rose petals

Schulz, D. F., Schott, R. T., Voorrips, R. E., Smulders, R., Linde, M. & Debener, T., 2016, In : Frontiers in Plant Science. 7, DECEMBER2016, 1798.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
corolla
anthocyanins
carotenoids
Rosa
ornamental plants
20 Citations (Scopus)

High-density SNP-based genetic maps for the parents of an outcrossed and a selfed tetraploid garden rose cross, inferred from admixed progeny using the 68k rose SNP array

Vukosavljev, M., Arens, P., Voorrips, R. E., Van'T Westende, W. P. C., Esselink, G. D., Bourke, P. M., Cox, P., Van De Weg, W. E., Visser, R. G. F., Maliepaard, C. & Smulders, M. J. M., 2016, In : Horticulture Research. 3, 16052.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
base maps
Tetraploidy
tetraploidy
chromosome mapping
gardens
10 Citations (Scopus)

Integrating haplotype-specific linkage maps in tetraploid species using SNP markers

Bourke, P. M., Voorrips, R. E., Kranenburg, T., Jansen, H., Visser, R. G. F. & Maliepaard, C., 2016, In : Theoretical and Applied Genetics. 129, 11, p. 2211-2226 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
Solanum tuberosum
Haplotypes
tetraploidy
chromosome mapping
19 Citations (Scopus)

PediHaplotyper: software for consistent assignment of marker haplotypes in pedigrees

Voorrips, R. E., Bink, M. C. A. M., Kruisselbrink, J. W., Koehorst-van Putten, H. J. J. & van de Weg, E., 2016, In : Molecular Breeding. 36, 119.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Pedigree
pedigree
Haplotypes
Single Nucleotide Polymorphism
haplotypes
12 Citations (Scopus)

Population structure and genome-wide association analysis for frost tolerance in oat using continuous SNP array signal intensity ratios

Tumino, G., Voorrips, R. E., Rizza, F., Badeck, F. W., Morcia, C., Ghizzoni, R., Germeier, C. U., Paulo, M. J., Terzi, V. & Smulders, M. J. M., 2016, In : Theoretical and Applied Genetics. 129, 9, p. 1711-1724

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
frost resistance
Genome-Wide Association Study
Single Nucleotide Polymorphism
oats
population structure
13 Citations (Scopus)

Probabilistic Multilocus Haplotype Reconstruction in Outcrossing Tetraploids

Zheng, C., Voorrips, R. E., Jansen, J., Hackett, C. A., Ho, J. & Bink, M. C. A. M., 2016, In : Genetics. 203, 1, p. 119-131

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetraploidy
Haplotypes
Chromosome Pairing
Polyploidy
Solanum tuberosum
1164 Citations (Scopus)

The FAIR Guiding Principles for scientific data management and stewardship: Comment

Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J. W., Da Silva Santos, L. B., Bourne, P. E., Bouwman, J., Brookes, A. J., Clark, T., Crosas, M., Dillo, I., Dumon, O., Edmunds, S., Evelo, C. T., Finkers, R., Gonzalez-Beltran, A. & 33 others, Gray, A. J. G., Groth, P., Goble, C., Grethe, J. S., Heringa, J., 't Hoen, P. A. C., Hooft, R., Kuhn, T., Kok, R., Kok, J., Lusher, S. J., Martone, M. E., Mons, A., Packer, A. L., Persson, B., Rocca-Serra, P., Roos, M., van Schaik, R., Sansone, S. A., Schultes, E., Sengstag, T., Slater, T., Strawn, G., Swertz, M. A., Thompson, M., van der Lei, J., van Mulligen, E., Velterop, J., Waagmeester, A., Wittenburg, P., Wolstencroft, K., Zhao, J. & Mons, B., 2016, In : Scientific Data. 3, 160018.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Reusability
Data Management
Information management
management
Reuse
2015
4 Citations (Scopus)

Detection of an inversion in the Ty-2 region between S. lycopersicum and S. habrochaites by a combination of de novo genome assembly and BAC cloning

Wolters, A. M. A., Caro Rios, C. M., Dong, S., Finkers, H. J., Gao, J., Visser, R. G. F., Wang, X., Du, Y. & Bai, Y., 2015, In : Theoretical and Applied Genetics. 128, 10, p. 1987-1997

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
genome assembly
Solanum lycopersicum
Lycopersicon esculentum
introgression
Organism Cloning
48 Citations (Scopus)

Development and analysis of an 20K SNP array for potato (Solanum tuberosum): An insight in the breeding history

Vos, P. G., Uitdewilligen, J. G. A. M. L., Voorrips, R. E., Visser, R. G. F. & van Eck, H. J., 2015, In : Theoretical and Applied Genetics. 128, 12, p. 2387-2401

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Solanum tuberosum
Breeding
Single Nucleotide Polymorphism
potatoes
history

Pedigree Based Analyses: A powerful approach for QTL discovery in pedigreed breeding germplasm and support on breeding decisions

van de Weg, W. E., Bink, M. C. A. M., Voorrips, R. E., Kruisselbrink, J. W., Jansen, H., Pikunova, A., Serova, Z. M., Krasova, N. G., Sedov, E. & Laurens, F., 2015, In : Contemporary Horticulture. 14, 2, p. 12-19

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

QTL mapping of thrips resistance in pepper

Maharijaya, A., Vosman, B. J., Steenhuis-Broers, M. M., Pelgrom, K. T. B., Purwito, A., Visser, R. G. F. & Voorrips, R. E., 2015, In : Theoretical and Applied Genetics. 128, 10, p. 1945-1956

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Thysanoptera
Capsicum
sweet peppers
quantitative trait loci
Thrips (Thripidae)
29 Citations (Scopus)

The double-reduction landscape in tetraploid potato as revealed by a high-density linkage map

Bourke, P. M., Voorrips, R. E., Visser, R. G. F. & Maliepaard, C., 2015, In : Genetics. 201, 3, p. 853-863

Research output: Contribution to journalArticleAcademicpeer-review

Tetraploidy
Solanum tuberosum
Genetic Linkage
Polyploidy
Centromere