Research Output 2015 2019

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2019

Genome-wide transcriptome analysis reveals molecular pathways involved in leafy head formation of Chinese cabbage (Brassica rapa)

Sun, X. X., Basnet, R. K., Yan, Z., Bucher, J., Cai, C., Zhao, J. & Bonnema, G., 1 Dec 2019, In : Horticulture Research. 6, 1, 130.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Brassica rapa
Chinese cabbage
Brassica
Gene Expression Profiling
transcriptomics
2018

Combining QTL mapping with transcriptome and metabolome profiling reveals a possible role for ABA signaling in resistance against the cabbage whitefly in cabbage

Broekgaarden, C., Pelgrom, K. T. B., Bucher, J., van Dam, N. M., Grosser, K., Pieterse, C. M. J., van Kaauwen, M., Steenhuis, G., Voorrips, R. E., de Vos, M., Vosman, B., Worrich, A. & van Wees, S. C. M., 6 Nov 2018, In : PLoS ONE. 13, 11, e0206103.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
metabolome
Abscisic Acid
Hemiptera
Metabolome
Brassica
3 Citations (Scopus)
cauliflower
ambient temperature
gene
curds (plant)
flowering

Transcriptome profiling of Ricinus communis L. provides new insights underlying the mechanisms towards thermotolerance during seed imbibition and germination

Ribeiro, P. R., Willems, L. A. J., Silva, A. T., Fernandez, L. G., de Castro, R. D., Bucher, J., Snoek, B. L., Hilhorst, H. W. M. & Ligterink, W., 15 Dec 2018, In : Industrial Crops and Products. 126, p. 380-393

Research output: Contribution to journalArticleAcademicpeer-review

Ricinus communis
imbibition
transcriptomics
heat tolerance
germination
2017
49 Citations (Scopus)

Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping

Thoen, H. P. M., Davila Olivas, N. H., Kloth, K. J., Coolen, S., Huang, P., Aarts, M. G. M., Molenaar, J. A., Bakker, J., Bouwmeester, H. J., Broekgaarden, C., Bucher, J., Busscher-Lange, J., Cheng, X., van Dijk-Fradin, E. F., Jongsma, M. A., Julkowska, M. M., Keurentjes, J. J. B., Ligterink, W., Pieterse, C. M. J., Ruyter-Spira, C. P. & 13 others, Smant, G., van Schaik, C. C., van Wees, S. C. M., Visser, R. G. F., Voorrips, R. E., Vosman, B., Vreugdenhil, D., Warmerdam, S., Wiegers, G. L., van Heerwaarden, J., Kruijer, W. T., van Eeuwijk, F. A. & Dicke, M., 2017, In : New Phytologist. 213, 3, p. 1346-1362

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
plant stress
stress tolerance
chromosome mapping
Genome
single nucleotide polymorphism
19 Citations (Scopus)

Splicing-related genes are alternatively spliced upon changes in ambient temperatures in plants

Verhage, D. S. L., Severing, E., Bucher, J., Lammers, M., Busscher-Lange, J., Bonnema, A. B., Rodenburg, N., Proveniers, M. C. G., Angenent, G. C. & Immink, G. H., 2017, In : PLoS ONE. 12, 3, e0172950.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Recombinant DNA
alternative splicing
ambient temperature
Genes
Temperature
2016
11 Citations (Scopus)

A Systems genetics approach identifies gene regulatory networks associated with fatty acid composition in brassica rapa seed

Basnet, R. K., Pino Del Carpio, D., Xiao, D., Bucher, J., Jin, M., Boyle, K., Fobert, P., Visser, R. G. F., Maliepaard, C. & Bonnema, G., 2016, In : Plant Physiology. 170, 1, p. 568-585

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Brassica rapa
Gene Regulatory Networks
Seeds
Fatty Acids
fatty acid composition
86 Citations (Scopus)

Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea

Cheng, F., Sun, R., Hou, X., Zheng, H., Zhang, F., Zhang, Y., Liu, B., Liang, J., Zhuang, M., Liu, Y., Liu, D., Wang, X., Li, P., Liu, Y., Lin, K., Bucher, J., Zhang, N., Wang, Y., Wang, H., Deng, J. & 24 others, Liao, Y., Wei, K., Zhang, X., Fu, L., Hu, Y., Liu, J., Cai, C., Zhang, S., Zhang, S., Li, F., Zhang, H., Zhang, J., Guo, N., Liu, Z., Liu, J., Sun, C., Ma, Y., Zhang, H., Cui, Y., Freeling, M. R., Borm, T., Bonnema, G., Wu, J. & Wang, X., 2016, In : Nature Genetics. 48, 10, p. 1218-1224

Research output: Contribution to journalArticleAcademicpeer-review

Brassica rapa
Brassica
Brassica napus
Genome
Domestication
2015
11 Citations (Scopus)

Quantitative Trait Locus Analysis of seed germination and seedling vigour in Brassica rapa reveals QTL hotspots and epistatic interactions

Basnet, R. K., Duwal, A., Tiwari, D. N., Xiao, D., Monakhos, S., Bucher, J., Visser, R. G. F., Groot, S. P. C., Bonnema, A. B. & Maliepaard, C. A., 2015, In : Frontiers in Plant Science. 6, 32 p., 1032.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Brassica rapa
vigor
quantitative trait loci
seed germination
seedlings