Research Output 1994 2019

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2019

A rapid method to screen wild Solanum for resistance to early blight

Wolters, P. J., de Vos, L., Bijsterbosch, G., Woudenberg, J. H. C., Visser, R. G. F., van der Linden, G. & Vleeshouwers, V. G. A. A., May 2019, In : European Journal of Plant Pathology. 154, 1, p. 109-114

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Solanum
blight
rapid methods
genotype
breeding
2 Citations (Scopus)
Open Access
warts
Warts
Disease Resistance
Pedigree
Solanum tuberosum
1 Citation (Scopus)

Development of the GlutEnSeq capture system for sequencing gluten gene families in hexaploid bread wheat with deletions or mutations induced by γ-irradiation or CRISPR/Cas9

Jouanin, A., Borm, T., Boyd, L. A., Cockram, J., Leigh, F., Santos, B. A. C. M., Visser, R. G. F. & Smulders, M. J. M., 1 Jul 2019, In : Journal of Cereal Science. 88, p. 157-166 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
Glutens
Sequence Deletion
Bread
hexaploidy

Pfcyp51 exclusively determines reduced sensitivity to 14α-demethylase inhibitor fungicides in the banana black Sigatoka pathogen Pseudocercospora fijiensis

Chong, P., Vichou, A. E., Schouten, H. J., Meijer, H. J. G., Arango Isaza, R. E. & Kema, G. H. J., 17 Oct 2019, In : PLoS ONE. 14, 10, e0223858.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
black Sigatoka
Mycosphaerella fijiensis
Fungicides
Musa
Pathogens
2018
33 Citations (Scopus)

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits

Hibrand Saint-Oyant, L., Ruttink, T., Hamama, L., Kirov, I., Lakhwani, D., Zhou, N. N., Bourke, P. M., Daccord, N., Leus, L., Schulz, D., van de Geest, H., Hesselink, T., Van Laere, K., Debray, K., Balzergue, S., Thouroude, T., Chastellier, A., Jeauffre, J., Voisine, L., Gaillard, S. & 21 others, Borm, T. J. A., Arens, P., Voorrips, R. E., Maliepaard, C., Neu, E., Linde, M., Le Paslier, M. C., Bérard, A., Bounon, R., Clotault, J., Choisne, N., Quesneville, H., Kawamura, K., Aubourg, S., Sakr, S., Smulders, M. J. M., Schijlen, E., Bucher, E., Debener, T., De Riek, J. & Foucher, F., 2018, In : Nature Plants. 4, p. 473-484

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Rosa chinensis
Rosa
genome
plant spines
doubled haploids
14 Citations (Scopus)

An integrated approach for increasing breeding efficiency in apple and peach in Europe

Laurens, F., Aranzana, M. J., Arus, P., Bassi, D., Bink, M., Bonany, J., Caprera, A., Corelli-Grappadelli, L., Costes, E., Durel, C. E., Mauroux, J. B., Muranty, H., Nazzicari, N., Pascal, T., Patocchi, A., Peil, A., Quilot-Turion, B., Rossini, L., Stella, A., Troggio, M. & 2 others, Velasco, R. & Van De Weg, E., 1 Dec 2018, In : Horticulture Research. 5, 1, 11.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Malus
peaches
Breeding
apples
Genes
9 Citations (Scopus)
Open Access
Solanum galapagense
Lycopersicon esculentum
Trichomes
Insects
Solanum
8 Citations (Scopus)

Development of wheat with hypoimmunogenic gluten obstructed by the gene editing policy in europe

Jouanin, A., Boyd, L., Visser, R. G. F. & Smulders, M. J. M., 18 Oct 2018, In : Frontiers in Plant Science. 871, 1523.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
gluten
Genes
wheat
celiac disease
genes
12 Citations (Scopus)

Epistatic fire blight resistance QTL alleles in the apple cultivar ‘Enterprise’ and selection X-6398 discovered and characterized through pedigree-informed analysis

van de Weg, E., Di Guardo, M., Jänsch, M., Socquet-Juglard, D., Costa, F., Baumgartner, I., Broggini, G. A. L., Kellerhals, M., Troggio, M., Laurens, F., Durel, C. E. & Patocchi, A., 1 Jan 2018, In : Molecular Breeding. 38, 1, 5.

Research output: Contribution to journalArticleAcademicpeer-review

Erwinia amylovora
Quantitative Trait Loci
Malus
Pedigree
pedigree
10 Citations (Scopus)

Food processing and breeding strategies for coeliac-safe and healthy wheat products

Jouanin, A., Gilissen, L. J. W. J., Boyd, L. A., Cockram, J., Leigh, F. J., Wallington, E. J., van den Broeck, H. C., van der Meer, I. M., Schaart, J. G., Visser, R. G. F. & Smulders, R., Aug 2018, In : Food Research International. 110, p. 11-21

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
wheat products
Food Handling
Glutens
food processing
abdomen
Open Access
agricultural practice
crop
nongovernmental organization
weed
incentive
5 Citations (Scopus)

Oats in healthy gluten-free and regular diets: A perspective

Smulders, M. J. M., van de Wiel, C. C. M., van den Broeck, H. C., van der Meer, I. M., Israel-Hoevelaken, T. P. M., Timmer, R. D., van Dinter, B. J., Braun, S. & Gilissen, L. J. W. J., Aug 2018, In : Food Research International. 110, p. 3-10

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gluten-Free Diet
gluten
oats
diet
Glutens
9 Citations (Scopus)

PolymapR-linkage analysis and genetic map construction from F1 populations of outcrossing polyploids

Bourke, P. M., van Geest, G., Voorrips, R. E., Jansen, J., Kranenburg, T., Shahin, A., Visser, R. G. F., Arens, P., Smulders, M. J. M. & Maliepaard, C., 15 Oct 2018, In : Bioinformatics. 34, 20, p. 3496-3502

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Linkage Analysis
Genetic Linkage
Polyploidy
Chrysanthemum
Crops
5 Citations (Scopus)

Reduced phloem uptake of Myzus persicae on an aphid resistant pepper accession

Sun, M., Voorrips, R. E., Steenhuis-Broers, G., van't Westende, W. & Vosman, B., 27 Jun 2018, In : BMC Plant Biology. 18, 1, 138.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Myzus persicae
pepper
phloem
Aphidoidea
uptake mechanisms
1 Citation (Scopus)

Satellite DNA in Paphiopedilum subgenus Parvisepalum as revealed by high-throughput sequencing and fluorescent in situ hybridization

Lee, Y. I., Yap, J. W., Izan, S., Leitch, I. J., Fay, M. F., Lee, Y. C., Hidalgo, O., Dodsworth, S., Smulders, M. J. M., Gravendeel, B. & Leitch, A. R., 2 Aug 2018, In : BMC Genomics. 19, 1, 578.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Satellite DNA
Fluorescence In Situ Hybridization
Chromosomes
Ribosomal DNA
Genome
19 Citations (Scopus)

Stress and sexual reproduction affect the dynamics of the wheat pathogen effector AvrStb6 and strobilurin resistance

Kema, G. H. J., Mirzadi Gohari, A., Aouini, L., Gibriel, H. A. Y., Ware, S. B., van Den Bosch, F., Manning-Smith, R., Alonso-Chavez, V., Helps, J., Ben M’Barek, S., Mehrabi, R., Diaz-Trujillo, C., Zamani, E., Schouten, H. J., van der Lee, T. A. J., Waalwijk, C., de Waard, M. A., de Wit, P. J. G. M., Verstappen, E. C. P., Thomma, B. P. H. J. & 2 others, Meijer, H. J. G. & Seidl, M. F., Apr 2018, In : Nature Genetics. 50, p. 375-380

Research output: Contribution to journalArticleAcademicpeer-review

Triticum
Reproduction
Plant Diseases
Gene Frequency
Population
11 Citations (Scopus)
Phytophthora infestans
phosphotransferases (kinases)
Phosphotransferases
receptors
Proteins
8 Citations (Scopus)

The red bayberry genome and genetic basis of sex determination

Jia, H. M., Jia, H. J., Cai, Q. L., Wang, Y., Zhao, H. B., Yang, W. F., Wang, G. Y., Li, Y. H., Zhan, D. L., Shen, Y. T., Niu, Q. F., Chang, L., Qiu, J., Zhao, L., Xie, H. B., Fu, W. Y., Jin, J., Li, X. W., Jiao, Y., Zhou, C. C. & 7 others, Tu, T., Chai, C. Y., Gao, J. L., Fan, L. J., van de Weg, E., Wang, J. Y. & Gao, Z. S., 10 Jul 2018, In : Plant Biotechnology Journal. 17, 2, p. 397-409

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Myrica
Sex Determination Processes
Genome
genome
gender
1 Citation (Scopus)

Two different R gene loci co-evolved with Avr2 of Phytophthora infestans and confer distinct resistance specificities in potato

Aguilera-Galvez, C., Champouret, N., Rietman, H., Lin, X., Wouters, D., Chu, Z., Jones, J. D. G., Vossen, J. H., Visser, R. G. F., Wolters, P. J. & Vleeshouwers, V. G. A. A., 1 Mar 2018, In : Studies in Mycology. 89, p. 105-115

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Phytophthora infestans
vpr Genes
Solanum
Solanum tuberosum
potatoes
6 Citations (Scopus)

Two QTL characterized for soft scald and soggy breakdown in apple (Malus × domestica) through pedigree-based analysis of a large population of interconnected families

Howard, N. P., van de Weg, E., Tillman, J., Tong, C. B. S., Silverstein, K. A. T. & Luby, J. J., 1 Feb 2018, In : Tree Genetics and Genomes. 14, 1, 2.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Quantitative Trait Loci
Malus
Pedigree
Malus domestica
pedigree
2017
14 Citations (Scopus)

Conclusive evidence for hexasomic inheritance in chrysanthemum based on analysis of a 183 k SNP array

van Geest, G., Voorrips, R. E., Esselink, D., Post, A., Visser, R. G. F. & Arens, P., 2017, In : BMC Genomics. 18, 585.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chrysanthemum
Single Nucleotide Polymorphism
RNA Sequence Analysis
Alleles
Genotype
14 Citations (Scopus)

Deciphering the genetic control of fruit texture in apple by multiple family-based analysis and genome-wide association

Di Guardo, M., Bink, M. C. A. M., Guerra, W., Letschka, T., Lozano, L., Busatto, N., Poles, L., Tadiello, A., Bianco, L., Visser, R. G. F., van de Weg, E. & Costa, F., 2017, In : Journal of Experimental Botany. 68, 7, p. 1451-1466

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome-Wide Association Study
Malus
Fruit
apples
texture
2 Citations (Scopus)
Open Access
chloroplasts
nucleotide sequences
genome
Paphiopedilum
Aegilops tauschii
15 Citations (Scopus)

Elucidation of the Honeycrisp' pedigree through haplotype analysis with a multi-family integrated SNP linkage map and a large apple (Malus×domestica) pedigree-connected SNP data set

Howard, N. P., van de Weg, E., Bedford, D. S., Peace, C. P., Vanderzande, S., Clark, M. D., Teh, S. L., Cai, L. & Luby, J. J., 2017, In : Horticulture Research. 4, 17003.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Malus
Pedigree
pedigree
Haplotypes
chromosome mapping
6 Citations (Scopus)

Frequency of a natural truncated allele of MdMLO19 in the germplasm of Malus domestica

Pessina, S., Palmieri, L., Bianco, L., Gassmann, J., Van De Weg, E., Visser, R. G. F., Magnago, P., Schouten, H. J., Bai, Y., Riccardo Velasco, R. & Malnoy, M., 2017, In : Molecular Breeding. 37, 1, 7.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Malus
Malus domestica
powdery mildew
germplasm
apples
6 Citations (Scopus)

Functional characterization of cucumber (Cucumis sativus L.) Clade V MLO genes

Berg, J. A., Appiano, M., Bijsterbosch, G., Visser, R. G. F., Schouten, H. J. & Bai, Y., 2017, In : BMC Plant Biology. 17, 1, 80.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cucumis sativus
cucumbers
powdery mildew
genes
mutants
11 Citations (Scopus)

Genetic structure of a QTL hotspot on chromosome 2 in sweet cherry indicates positive selection for favorable haplotypes

Cai, L., Voorrips, R. E., van de Weg, E., Peace, C. & Iezzoni, A., 2017, In : Molecular Breeding. 37, 7, 10 p., 85.

Research output: Contribution to journalArticleAcademicpeer-review

Chromosomes, Human, Pair 2
Genetic Structures
Quantitative Trait Loci
Prunus avium
Haplotypes

Genome editing as new plant breeding technique: opportunities and challenge

Schaart, J. G. & Smulders, M. J. M., 2017, In : European Seed. 4, 1, p. 48-48

Research output: Contribution to journalArticleProfessional

Open Access
10 Citations (Scopus)

Genome-wide association analysis for lodging tolerance and plant height in a diverse European hexaploid oat collection

Tumino, G., Voorrips, R. E., Morcia, C., Ghizzoni, R., Germeier, C. U., Caldas Paulo, J., Terzi, V. & Smulders, M. J. M., 2017, In : Euphytica. 213, 8, 163.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome-Wide Association Study
lodging
hexaploidy
oats
Single Nucleotide Polymorphism
152 Citations (Scopus)

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

Daccord, N., Celton, J-M., Linsmith, G., Becker, C., Choisne, N., Schijlen, E., van de Geest, H., Bianco, L., Micheletti, D., Velasco, R., Di Pierro, E. A., Gouzy, J., Rees, D. J. G., Guérif, P., Muranty, H., Durel, C. E., Laurens, F., Lespinasse, Y., Gaillard, S., Aubourg, S. & 5 others, Quesneville, H., Weigel, D., van de Weg, E., Troggio, M. & Bucher, E., 2017, In : Nature Genetics. 49, 7, p. 1099-1106

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Malus
Fruit
DNA Transposable Elements
Genome
Pyrus
18 Citations (Scopus)

Integrated QTL detection for key breeding traits in multiple peach progenies

Hernández Mora, J. R., Micheletti, D., Bink, M., Van de Weg, E., Cantín, C., Nazzicari, N., Caprera, A., Dettori, M. T., Micali, S., Banchi, E., Campoy, J. A., Dirlewanger, E., Lambert, P., Pascal, T., Troggio, M., Bassi, D., Rossini, L., Verde, I., Quilot-Turion, B., Laurens, F. & 2 others, Arús, P. & Aranzana, M. J., 2017, In : BMC Genomics. 18, 15 p., 404.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Breeding
Alleles
Genotype
Gene Pool
Bayes Theorem
2 Citations (Scopus)

Methods for the quantification of resistance of apple genotypes to european fruit tree canker caused by Neonectria Ditissima

Wenneker, M., Goedhart, P. W., Van der Steeg, P., Van de Weg, W. E. & Schouten, H. J., 1 Dec 2017, In : Plant Disease. 101, 12, p. 2012-2019

Research output: Contribution to journalArticleAcademicpeer-review

Neonectria ditissima
lesions (plant)
fruit trees
apples
genotype
20 Citations (Scopus)

New traits in crops produced by genome editing techniques based on deletions

van de Wiel, C. C. M., Schaart, J. G., Lotz, L. A. P. & Smulders, M. J. M., 2017, In : Plant Biotechnology Reports. 11, 1, p. 1-8

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
nucleases
Disease Resistance
genome
Zinc Fingers

Obtaining disease resistance by changing S-genes

Schouten, H. J. & Bai, Y., 2017, In : Prophyta Annual. 2017, p. 44-45

Research output: Contribution to journalArticleProfessional

Open Access
disease resistance
genes
plant pathogens
pathogens
26 Citations (Scopus)

Partial preferential chromosome pairing is genotype dependent in tetraploid rose

Bourke, P. M., Arens, P., Voorrips, R. E., Esselink, D., Koning-Boucoiran, C. F. S., van 't Westende, W., Santos Leonardo, T., Wissink, P., Zheng, C., van Geest, G., Visser, R. G. F., Krens, F. A., Smulders, R. & Maliepaard, C., 2017, In : The Plant Journal. 90, 2, p. 330-343

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chromosome Pairing
chromosome pairing
Tetraploidy
tetraploidy
Rosa
19 Citations (Scopus)

Pedigree-based analysis in a multiparental population of octoploid strawberry reveals QTL alleles conferring resistance to phytophthora cactorum

Mangandi, J., Verma, S., Osorio, L., Peres, N. A., van de Weg, E. & Whitaker, V. M., 2017, In : G3 : Genes Genomes Genetics. 7, 6, p. 1707-1719

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Phytophthora
Fragaria
Quantitative Trait Loci
Pedigree
Alleles
10 Citations (Scopus)

Predicting flowering behavior and exploring its genetic determinism in an apple multi-family population based on statistical indices and simplified phenotyping

Durand, J. B., Allard, A., Guitton, B., van de Weg, E., Bink, M. C. A. M. & Costes, E., 2017, In : Frontiers in Plant Science. 8, 15 p., 858.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
apples
flowering
phenotype
shoots
quantitative trait loci
11 Citations (Scopus)

Re-sequencing transgenic plants revealed rearrangements at T-DNA inserts, and integration of a short T-DNA fragment, but no increase of small mutations elsewhere

Schouten, H. J., van de Geest, H., Papadimitriou, S., Bemer, M., Schaart, J. G., Smulders, R., Perez, G. S. & Schijlen, E., Mar 2017, In : Plant Cell Reports. 36, 3, p. 493-504

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
transgenic plants
mutation
DNA
genome
Arabidopsis thaliana
2016
28 Citations (Scopus)

A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species

Di Pierro, E. A., Gianfranceschi, L., Di Guardo, M., Koehorst-Van Putten, H. J. J., Kruisselbrink, J. W., Longhi, S., Troggio, M., Bianco, L., Muranty, H., Pagliarani, G., Bink, M. C. A. M., Voorrips, R. E. & van de Weg, E., 2016, In : Horticulture Research. 3, 16057.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Malus
outcrossing
Polymorphism
single nucleotide polymorphism
Single Nucleotide Polymorphism
4 Citations (Scopus)

Approaches for evaluation of resistance to European canker (Neonectria ditissima) in apple

Garkava-Gustavsson, L., Ghasemkhani, M., Zborowska, A., Englund, J. E., Lateur, M. & van de Weg, E., 2016, In : Acta Horticulturae. 1127, p. 75-81

Research output: Contribution to journalArticleAcademicpeer-review

Neonectria ditissima
apples
cultivars
climate
lesions (plant)
19 Citations (Scopus)
blue light
red light
stomatal conductance
lighting
tomatoes
3 Citations (Scopus)

Cisgenic Rvi6 scab-resistant apple lines show no differences in Rvi6 transcription when compared with conventionally bred cultivars

Chizzali, C., Gusberti, M., Schouten, H. J., Gessler, C. & Broggini, G. A. L., 2016, In : Planta. 243, 3, p. 635-644

Research output: Contribution to journalArticleAcademicpeer-review

Malus
Venturia inaequalis
transcription (genetics)
apples
breeds
38 Citations (Scopus)

Detecting QTLs and putative candidate genes involved in budbreak and flowering time in an apple multiparental population

Allard, A., Bink, M. C. A. M., Martinez, S., Kelner, J. J., Legave, J. M., Di Guardo, M., Di Pierro, E. A., Laurens, F., Van De Weg, E. W. & Costes, E., 2016, In : Journal of Experimental Botany. 67, 9, p. 2875-2888

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genetic Determinism
budbreak
Malus
quantitative trait loci
apples
51 Citations (Scopus)

Development and validation of the Axiom®Apple480K SNP genotyping array

Bianco, L., Cestaro, A., Linsmith, G., Muranty, H., Denancé, C., Théron, A., Poncet, C., Micheletti, D., Kerschbamer, E., Di Pierro, E. A., Larger, S., Pindo, M., Van De Weg, E., Davassi, A., Laurens, F., Velasco, R., Durel, C. E. & Troggio, M., 2016, In : The Plant Journal. 86, 1, p. 62-74

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Malus
genotyping
Single Nucleotide Polymorphism
apples
Malus domestica

Erratum to A qRT-PCR assay for the expression of all Mal d 1 isoallergen genes [BMC Plant Biol., 13, (2013), 51]

Pagliarani, G., Paris, R., Arens, P., Tartarini, S., Ricci, G., Smulders, M. J. M. & Van De Weg, E. W., 2016, In : BMC Plant Biology. 16, 1, 83.

Research output: Contribution to journalArticleAcademic

Open Access
breeding methods
plant breeding
crop production
breeding
cultivars
5 Citations (Scopus)

Fine-scale spatial genetic structure in the frankincense tree Boswellia papyrifera (Del.) Hochst. and implications for conservation

Addisalem, A. B., Duminil, J., Wouters, D., Bongers, F. & Smulders, M. J. M., 2016, In : Tree Genetics and Genomes. 12, 86.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Boswellia
Genetic Structures
genetic structure
Ethiopia
gene
10 Citations (Scopus)

Genetic diversity and differentiation of the frankincense tree (Boswellia papyrifera (Del.) Hochst) across Ethiopia and implications for its conservation

Addisalem, A. B., Bongers, F., Kassahun, T. & Smulders, M. J. M., 2016, In : Forest Ecology and Management. 360, p. 253-260

Research output: Contribution to journalArticleAcademicpeer-review

Boswellia
Ethiopia
genetic differentiation
genetic variation
sapling
10 Citations (Scopus)

Genetic diversity and genetic structure of Persian walnut (Juglans regia) accessions from 14 European, African, and Asian countries using SSR markers

Ebrahimi, A., Zarei, A., Lawson, S., Woeste, K. E. & Smulders, M. J. M., 2016, In : Tree Genetics and Genomes. 12, 6, 114.

Research output: Contribution to journalArticleAcademicpeer-review

Juglans
Juglans regia
Genetic Structures
walnuts
genetic structure