Research Output 1994 2019

2019

A rapid method to screen wild Solanum for resistance to early blight

Wolters, P. J., de Vos, L., Bijsterbosch, G., Woudenberg, J. H. C., Visser, R. G. F., van der Linden, G. & Vleeshouwers, V. G. A. A., May 2019, In : European Journal of Plant Pathology. 154, 1, p. 109-114

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Solanum
blight
rapid methods
genotype
breeding
2 Citations (Scopus)
Open Access
warts
Warts
Disease Resistance
Pedigree
Solanum tuberosum
2 Citations (Scopus)

Development of the GlutEnSeq capture system for sequencing gluten gene families in hexaploid bread wheat with deletions or mutations induced by γ-irradiation or CRISPR/Cas9

Jouanin, A., Borm, T., Boyd, L. A., Cockram, J., Leigh, F., Santos, B. A. C. M., Visser, R. G. F. & Smulders, M. J. M., 1 Jul 2019, In : Journal of Cereal Science. 88, p. 157-166 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
Glutens
Sequence Deletion
Bread
hexaploidy

Pfcyp51 exclusively determines reduced sensitivity to 14α-demethylase inhibitor fungicides in the banana black Sigatoka pathogen Pseudocercospora fijiensis

Chong, P., Vichou, A. E., Schouten, H. J., Meijer, H. J. G., Arango Isaza, R. E. & Kema, G. H. J., 17 Oct 2019, In : PLoS ONE. 14, 10, e0223858.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
black Sigatoka
Mycosphaerella fijiensis
Fungicides
Musa
Pathogens
2018
33 Citations (Scopus)

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits

Hibrand Saint-Oyant, L., Ruttink, T., Hamama, L., Kirov, I., Lakhwani, D., Zhou, N. N., Bourke, P. M., Daccord, N., Leus, L., Schulz, D., van de Geest, H., Hesselink, T., Van Laere, K., Debray, K., Balzergue, S., Thouroude, T., Chastellier, A., Jeauffre, J., Voisine, L., Gaillard, S. & 21 others, Borm, T. J. A., Arens, P., Voorrips, R. E., Maliepaard, C., Neu, E., Linde, M., Le Paslier, M. C., Bérard, A., Bounon, R., Clotault, J., Choisne, N., Quesneville, H., Kawamura, K., Aubourg, S., Sakr, S., Smulders, M. J. M., Schijlen, E., Bucher, E., Debener, T., De Riek, J. & Foucher, F., 2018, In : Nature Plants. 4, p. 473-484

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Rosa chinensis
Rosa
genome
plant spines
doubled haploids
14 Citations (Scopus)

An integrated approach for increasing breeding efficiency in apple and peach in Europe

Laurens, F., Aranzana, M. J., Arus, P., Bassi, D., Bink, M., Bonany, J., Caprera, A., Corelli-Grappadelli, L., Costes, E., Durel, C. E., Mauroux, J. B., Muranty, H., Nazzicari, N., Pascal, T., Patocchi, A., Peil, A., Quilot-Turion, B., Rossini, L., Stella, A., Troggio, M. & 2 others, Velasco, R. & Van De Weg, E., 1 Dec 2018, In : Horticulture Research. 5, 1, 11.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Malus
peaches
Breeding
apples
Genes
9 Citations (Scopus)
Open Access
Solanum galapagense
Lycopersicon esculentum
Trichomes
Insects
Solanum

Correction to: New traits in crops produced by genome editing techniques based on deletions

van de Wiel, C. C. M., Schaart, J. G., Lotz, L. A. P. & Smulders, M. J. M., Oct 2018, In : Plant Biotechnology Reports. 12, 5, p. 375–375

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
Regulator Genes
Publications
Phenotype
genome
9 Citations (Scopus)

Development of wheat with hypoimmunogenic gluten obstructed by the gene editing policy in europe

Jouanin, A., Boyd, L., Visser, R. G. F. & Smulders, M. J. M., 18 Oct 2018, In : Frontiers in Plant Science. 871, 1523.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
gluten
Genes
wheat
celiac disease
genes
12 Citations (Scopus)

Epistatic fire blight resistance QTL alleles in the apple cultivar ‘Enterprise’ and selection X-6398 discovered and characterized through pedigree-informed analysis

van de Weg, E., Di Guardo, M., Jänsch, M., Socquet-Juglard, D., Costa, F., Baumgartner, I., Broggini, G. A. L., Kellerhals, M., Troggio, M., Laurens, F., Durel, C. E. & Patocchi, A., 1 Jan 2018, In : Molecular Breeding. 38, 1, 5.

Research output: Contribution to journalArticleAcademicpeer-review

Erwinia amylovora
Quantitative Trait Loci
Malus
Pedigree
pedigree
11 Citations (Scopus)

Food processing and breeding strategies for coeliac-safe and healthy wheat products

Jouanin, A., Gilissen, L. J. W. J., Boyd, L. A., Cockram, J., Leigh, F. J., Wallington, E. J., van den Broeck, H. C., van der Meer, I. M., Schaart, J. G., Visser, R. G. F. & Smulders, R., Aug 2018, In : Food Research International. 110, p. 11-21

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
wheat products
Food Handling
Glutens
food processing
abdomen

Gene editing using CRISPR/Cas9 to modify or remove gliadins from wheat and produce coeliac disease epitope-free wheat

Smulders, M. J. M., Jouanin, A. A. & Gilissen, L. J. W. J., Apr 2018, Proceedings of the 31st Meeting of the Working Group on Prolamin Analysis and Toxicity. Koehler, P. (ed.). Minden, Germany, p. 63-68

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
Open Access
agricultural practice
crop
nongovernmental organization
weed
incentive
5 Citations (Scopus)

Oats in healthy gluten-free and regular diets: A perspective

Smulders, M. J. M., van de Wiel, C. C. M., van den Broeck, H. C., van der Meer, I. M., Israel-Hoevelaken, T. P. M., Timmer, R. D., van Dinter, B. J., Braun, S. & Gilissen, L. J. W. J., Aug 2018, In : Food Research International. 110, p. 3-10

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gluten-Free Diet
gluten
oats
diet
Glutens

Plant breeding techniques in a new era

van de Wiel, C. C. M., Schaart, J. G., Kok, E. J., Prins, T. W., Smulders, M. J. M. & Lotz, L. A. P., 2018, 11 p. Wageningen : Wageningen University & Research.

Research output: Other contributionPamphlet

Open Access
9 Citations (Scopus)

PolymapR-linkage analysis and genetic map construction from F1 populations of outcrossing polyploids

Bourke, P. M., van Geest, G., Voorrips, R. E., Jansen, J., Kranenburg, T., Shahin, A., Visser, R. G. F., Arens, P., Smulders, M. J. M. & Maliepaard, C., 15 Oct 2018, In : Bioinformatics. 34, 20, p. 3496-3502

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Linkage Analysis
Genetic Linkage
Polyploidy
Chrysanthemum
Crops
5 Citations (Scopus)

Reduced phloem uptake of Myzus persicae on an aphid resistant pepper accession

Sun, M., Voorrips, R. E., Steenhuis-Broers, G., van't Westende, W. & Vosman, B., 27 Jun 2018, In : BMC Plant Biology. 18, 1, 138.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Myzus persicae
pepper
phloem
Aphidoidea
uptake mechanisms
1 Citation (Scopus)

Satellite DNA in Paphiopedilum subgenus Parvisepalum as revealed by high-throughput sequencing and fluorescent in situ hybridization

Lee, Y. I., Yap, J. W., Izan, S., Leitch, I. J., Fay, M. F., Lee, Y. C., Hidalgo, O., Dodsworth, S., Smulders, M. J. M., Gravendeel, B. & Leitch, A. R., 2 Aug 2018, In : BMC Genomics. 19, 1, 578.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Satellite DNA
Fluorescence In Situ Hybridization
Chromosomes
Ribosomal DNA
Genome
20 Citations (Scopus)

Stress and sexual reproduction affect the dynamics of the wheat pathogen effector AvrStb6 and strobilurin resistance

Kema, G. H. J., Mirzadi Gohari, A., Aouini, L., Gibriel, H. A. Y., Ware, S. B., van Den Bosch, F., Manning-Smith, R., Alonso-Chavez, V., Helps, J., Ben M’Barek, S., Mehrabi, R., Diaz-Trujillo, C., Zamani, E., Schouten, H. J., van der Lee, T. A. J., Waalwijk, C., de Waard, M. A., de Wit, P. J. G. M., Verstappen, E. C. P., Thomma, B. P. H. J. & 2 others, Meijer, H. J. G. & Seidl, M. F., Apr 2018, In : Nature Genetics. 50, p. 375-380

Research output: Contribution to journalArticleAcademicpeer-review

Triticum
Reproduction
Plant Diseases
Gene Frequency
Population
11 Citations (Scopus)
Phytophthora infestans
phosphotransferases (kinases)
Phosphotransferases
receptors
Proteins
8 Citations (Scopus)

The red bayberry genome and genetic basis of sex determination

Jia, H. M., Jia, H. J., Cai, Q. L., Wang, Y., Zhao, H. B., Yang, W. F., Wang, G. Y., Li, Y. H., Zhan, D. L., Shen, Y. T., Niu, Q. F., Chang, L., Qiu, J., Zhao, L., Xie, H. B., Fu, W. Y., Jin, J., Li, X. W., Jiao, Y., Zhou, C. C. & 7 others, Tu, T., Chai, C. Y., Gao, J. L., Fan, L. J., van de Weg, E., Wang, J. Y. & Gao, Z. S., 10 Jul 2018, In : Plant Biotechnology Journal. 17, 2, p. 397-409

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Myrica
Sex Determination Processes
Genome
genome
gender
1 Citation (Scopus)

Two different R gene loci co-evolved with Avr2 of Phytophthora infestans and confer distinct resistance specificities in potato

Aguilera-Galvez, C., Champouret, N., Rietman, H., Lin, X., Wouters, D., Chu, Z., Jones, J. D. G., Vossen, J. H., Visser, R. G. F., Wolters, P. J. & Vleeshouwers, V. G. A. A., 1 Mar 2018, In : Studies in Mycology. 89, p. 105-115

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Phytophthora infestans
vpr Genes
Solanum
Solanum tuberosum
potatoes
6 Citations (Scopus)

Two QTL characterized for soft scald and soggy breakdown in apple (Malus × domestica) through pedigree-based analysis of a large population of interconnected families

Howard, N. P., van de Weg, E., Tillman, J., Tong, C. B. S., Silverstein, K. A. T. & Luby, J. J., 1 Feb 2018, In : Tree Genetics and Genomes. 14, 1, 2.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Quantitative Trait Loci
Malus
Pedigree
Malus domestica
pedigree

Bladluisresistentie in Paprika: Groene Veredeling Paprika

Sun, M., Voorrips, R. E., van 't Westende, W. P. C. & Vosman, B., Jun 2017, 2 p. Wageningen : Wageningen University & Research.

Research output: Other contributionPamphlet

Open Access
14 Citations (Scopus)

Conclusive evidence for hexasomic inheritance in chrysanthemum based on analysis of a 183 k SNP array

van Geest, G., Voorrips, R. E., Esselink, D., Post, A., Visser, R. G. F. & Arens, P., 2017, In : BMC Genomics. 18, 585.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chrysanthemum
Single Nucleotide Polymorphism
RNA Sequence Analysis
Alleles
Genotype
14 Citations (Scopus)

Deciphering the genetic control of fruit texture in apple by multiple family-based analysis and genome-wide association

Di Guardo, M., Bink, M. C. A. M., Guerra, W., Letschka, T., Lozano, L., Busatto, N., Poles, L., Tadiello, A., Bianco, L., Visser, R. G. F., van de Weg, E. & Costa, F., 2017, In : Journal of Experimental Botany. 68, 7, p. 1451-1466

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome-Wide Association Study
Malus
Fruit
apples
texture
2 Citations (Scopus)
Open Access
chloroplasts
nucleotide sequences
genome
Paphiopedilum
Aegilops tauschii
8 Citations (Scopus)

Development and evaluation of the Axiom® IStraw35 384HT array for the allo-octoploid cultivated strawberry Fragaria ×ananassa

Verma, S., Bassil, N. V., van de Weg, E., Harrison, R. J., Monfort, A., Hidalgo, J. M., Amaya, I., Denoyes, B., Mahoney, L. L., Davis, T. M., Fan, Z., Knapp, S. & Whitaker, V. M., 20 Apr 2017, 8th International Strawberry Symposium. International Society for Horticultural Science, Vol. 1156. p. 75-81 (Acta Horticulturae; vol. 1156).

Research output: Chapter in Book/Report/Conference proceedingConference paper

Fragaria ananassa
strawberries
single nucleotide polymorphism
homozygosity
research programs
3 Citations (Scopus)

Discovering peach QTLs with multiple progeny analysis

Mora, J. R. H., Micheletti, D., Bink, M. C. A. M., van de Weg, W. E., Bassi, D., Nazzicari, N., Caprera, A., Dettori, M. T., Micali, S., Dirlewanger, E., Lambert, P., Pascal, T., Banchi, E., Troggio, M., Rossini, L., Verde, I., Quilot-Turion, B., Laurens, F., Arús, P. & Aranzana, M. J., 2017, 14th EUCARPIA Symposium on Fruit Breeding and Genetics. International Society for Horticultural Science, Vol. 1172. p. 405-410 (Acta Horticulturae; vol. 1172).

Research output: Chapter in Book/Report/Conference proceedingConference paper

peaches
quantitative trait loci
fruits
breeding
Prunus
2 Citations (Scopus)

Effectoromics-based identification of cell surface receptors in potato

Domazakis, E., Lin, X., Aguilera-Galvez, C., Wouters, D., Bijsterbosch, G., Wolters, P. J. & Vleeshouwers, V. G. A. A., 2017, Plant Pattern Recognition Receptors: Methods and Protocols. Shan, L. & He, P. (eds.). Humana Press Inc., Vol. 1578. p. 337-353 (Methods in Molecular Biology; vol. 1578).

Research output: Chapter in Book/Report/Conference proceedingChapter

Phytophthora infestans
Cell Surface Receptors
Solanum tuberosum
Breeding
Potexvirus
15 Citations (Scopus)

Elucidation of the Honeycrisp' pedigree through haplotype analysis with a multi-family integrated SNP linkage map and a large apple (Malus×domestica) pedigree-connected SNP data set

Howard, N. P., van de Weg, E., Bedford, D. S., Peace, C. P., Vanderzande, S., Clark, M. D., Teh, S. L., Cai, L. & Luby, J. J., 2017, In : Horticulture Research. 4, 17003.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Malus
Pedigree
pedigree
Haplotypes
chromosome mapping
Open Access
DNA Shuffling
Chromosomes, Human, Pair 2
Genetic Structures
Prunus avium
Haplotypes
6 Citations (Scopus)

Frequency of a natural truncated allele of MdMLO19 in the germplasm of Malus domestica

Pessina, S., Palmieri, L., Bianco, L., Gassmann, J., Van De Weg, E., Visser, R. G. F., Magnago, P., Schouten, H. J., Bai, Y., Riccardo Velasco, R. & Malnoy, M., 2017, In : Molecular Breeding. 37, 1, 7.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Malus
Malus domestica
powdery mildew
germplasm
apples
6 Citations (Scopus)

Functional characterization of cucumber (Cucumis sativus L.) Clade V MLO genes

Berg, J. A., Appiano, M., Bijsterbosch, G., Visser, R. G. F., Schouten, H. J. & Bai, Y., 2017, In : BMC Plant Biology. 17, 1, 80.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cucumis sativus
cucumbers
powdery mildew
genes
mutants
11 Citations (Scopus)

Genetic structure of a QTL hotspot on chromosome 2 in sweet cherry indicates positive selection for favorable haplotypes

Cai, L., Voorrips, R. E., van de Weg, E., Peace, C. & Iezzoni, A., 2017, In : Molecular Breeding. 37, 7, 10 p., 85.

Research output: Contribution to journalArticleAcademicpeer-review

Chromosomes, Human, Pair 2
Genetic Structures
Quantitative Trait Loci
Prunus avium
Haplotypes

Genome editing as new plant breeding technique: opportunities and challenge

Schaart, J. G. & Smulders, M. J. M., 2017, In : European Seed. 4, 1, p. 48-48

Research output: Contribution to journalArticleProfessional

Open Access
11 Citations (Scopus)

Genome-wide association analysis for lodging tolerance and plant height in a diverse European hexaploid oat collection

Tumino, G., Voorrips, R. E., Morcia, C., Ghizzoni, R., Germeier, C. U., Caldas Paulo, J., Terzi, V. & Smulders, M. J. M., 2017, In : Euphytica. 213, 8, 163.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome-Wide Association Study
lodging
hexaploidy
oats
Single Nucleotide Polymorphism
1 Citation (Scopus)

Genomics tools available for unravelling mechanisms underlying agronomical traits in strawberry with more to come

Denoyes, B., Amaya, I., Liston, A., Tennessen, J., Ashman, T. L., Whitaker, V. M., Hytönen, T., van de Weg, E., Osorio, S., Folta, K. M., Slovin, J., Harrison, R. J., Monfort, A. & Bassil, N. V., 2017, 8th International Strawberry Symposium. International Society for Horticultural Science, Vol. 1156. p. 13-24 (Acta Horticulturae; vol. 1156).

Research output: Chapter in Book/Report/Conference proceedingConference paper

strawberries
genomics
genotyping
genome
Fragaria vesca
154 Citations (Scopus)

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

Daccord, N., Celton, J-M., Linsmith, G., Becker, C., Choisne, N., Schijlen, E., van de Geest, H., Bianco, L., Micheletti, D., Velasco, R., Di Pierro, E. A., Gouzy, J., Rees, D. J. G., Guérif, P., Muranty, H., Durel, C. E., Laurens, F., Lespinasse, Y., Gaillard, S., Aubourg, S. & 5 others, Quesneville, H., Weigel, D., van de Weg, E., Troggio, M. & Bucher, E., 2017, In : Nature Genetics. 49, 7, p. 1099-1106

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Malus
Fruit
DNA Transposable Elements
Genome
Pyrus
18 Citations (Scopus)

Integrated QTL detection for key breeding traits in multiple peach progenies

Hernández Mora, J. R., Micheletti, D., Bink, M., Van de Weg, E., Cantín, C., Nazzicari, N., Caprera, A., Dettori, M. T., Micali, S., Banchi, E., Campoy, J. A., Dirlewanger, E., Lambert, P., Pascal, T., Troggio, M., Bassi, D., Rossini, L., Verde, I., Quilot-Turion, B., Laurens, F. & 2 others, Arús, P. & Aranzana, M. J., 2017, In : BMC Genomics. 18, 15 p., 404.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Breeding
Alleles
Genotype
Gene Pool
Bayes Theorem
Open Access
volatile compounds
chromosome mapping
apples
texture
fruits
2 Citations (Scopus)

Methods for the quantification of resistance of apple genotypes to european fruit tree canker caused by Neonectria Ditissima

Wenneker, M., Goedhart, P. W., Van der Steeg, P., Van de Weg, W. E. & Schouten, H. J., 1 Dec 2017, In : Plant Disease. 101, 12, p. 2012-2019

Research output: Contribution to journalArticleAcademicpeer-review

Neonectria ditissima
lesions (plant)
fruit trees
apples
genotype

Methods for the quantification of resistance of apple genotypes to European fruit tree canker caused by Neonectria ditissima

Wenneker, M., Goedhart, P., van der Steeg, P. A. H., van de Weg, W. E. & Schouten, H. J., 2017, Abstracts of the Third International Workshop on Apple Canker and Replant Disease. p. 13-13

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access
20 Citations (Scopus)

New traits in crops produced by genome editing techniques based on deletions

van de Wiel, C. C. M., Schaart, J. G., Lotz, L. A. P. & Smulders, M. J. M., 2017, In : Plant Biotechnology Reports. 11, 1, p. 1-8

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
nucleases
Disease Resistance
genome
Zinc Fingers

Nieuwe DNA-technieken in de plantenveredeling

Smulders, M. J. M., 2017

Research output: Non-textual formDigital or Visual ProductsOther research output

Open Access

Obtaining disease resistance by changing S-genes

Schouten, H. J. & Bai, Y., 2017, In : Prophyta Annual. 2017, p. 44-45

Research output: Contribution to journalArticleProfessional

Open Access
disease resistance
genes
plant pathogens
pathogens
26 Citations (Scopus)

Partial preferential chromosome pairing is genotype dependent in tetraploid rose

Bourke, P. M., Arens, P., Voorrips, R. E., Esselink, D., Koning-Boucoiran, C. F. S., van 't Westende, W., Santos Leonardo, T., Wissink, P., Zheng, C., van Geest, G., Visser, R. G. F., Krens, F. A., Smulders, R. & Maliepaard, C., 2017, In : The Plant Journal. 90, 2, p. 330-343

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chromosome Pairing
chromosome pairing
Tetraploidy
tetraploidy
Rosa