Research Output

2019

Genetic algorithm as an optimization tool for the development of sponge cell culture media

Munroe, S., Sandoval, K., Martens, D. E., Sipkema, D. & Pomponi, S. A., Mar 2019, In : In Vitro Cellular and Developmental Biology - Animal. 55, 3, p. 149-158

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Gut microbiota from infant with cow’s milk allergy promotes clinical and immune features of atopy in a murine model

Mauras, A., Wopereis, H., Yeop, I., Esber, N., Delannoy, J., Labellie, C., Reygner, J., Kapel, N., Slump, R., van Eijndthoven, T., Rutten, L., Knol, J., Garssen, J., Harthoorn, L. F., Butel, M. J., Bajaj-Elliott, M., Hartog, A. & Waligora-Dupriet, A. J., Sep 2019, In : Allergy: European Journal of Allergy and Clinical Immunology. 74, 9, p. 1790-1793

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access

High throughput cultivation-based screening on porous aluminum oxide chips allows targeted isolation of antibiotic resistant human gut bacteria

Versluis, D., de J. Bello González, T., Zoetendal, E. G., van Passel, M. W. J. & Smidt, H., 17 Jan 2019, In : PLoS ONE. 14, 1, e0210970.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

How bacteria can keep your gut healthy: beneficial microbes

Belzer, C., 24 Jan 2019

Research output: Non-textual formDigital or Visual ProductsOther research output

Open Access
4 Citations (Scopus)
Open Access

Intestinal Permeability Measured by Urinary Sucrose Excretion Correlates with Serum Zonulin and Faecal Calprotectin Concentrations in UC Patients in Remission

Wegh, C. A. M., De Roos, N. M., Hovenier, R., Meijerink, J., Besseling-Van Der Vaart, I., Van Hemert, S. & Witteman, B. J. M., 1 Apr 2019, In : Journal of Nutrition and Metabolism. 2019, 2472754.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Legionella growth potential of drinking water produced by a reverse osmosis pilot plant

Learbuch, K. L. G., Lut, M. C., Liu, G., Smidt, H. & van der Wielen, P. W. J. J., 15 Jun 2019, In : Water Research. 157, p. 55-63

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Long-term impact of oral vancomycin, ciprofloxacin and metronidazole on the gut microbiota in healthy humans

Haak, B. W., Lankelma, J. M., Hugenholtz, F., Belzer, C., de Vos, W. M. & Wiersinga, W. J., 1 Mar 2019, In : The Journal of antimicrobial chemotherapy. 74, 3, p. 782-786 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

10 Citations (Scopus)

Marine rare actinomycetes: A promising source of structurally diverse and unique novel natural products

Subramani, R. & Sipkema, D., 26 Jan 2019, In : Marine Drugs. 17, 5, 249.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Metabolic improvement in obese patients after duodenal–jejunal exclusion is associated with intestinal microbiota composition changes

de Jonge, C., Fuentes, S., Zoetendal, E. G., Bouvy, N. D., Nelissen, R., Buurman, W. A., Greve, J. W., de Vos, W. M. & Rensen, S. S., 14 Feb 2019, In : International Journal of Obesity. 43, p. 2509–2517

Research output: Contribution to journalArticleAcademicpeer-review

Metaproteomic and 16S rRNA Gene Sequencing Analysis of the Infant Fecal Microbiome

Cortes, L., Wopereis, H., Tartiere, A., Piquenot, J., Gouw, J. W., Tims, S., Knol, J. & Chelsky, D., 21 Mar 2019, In : International Journal of Molecular Sciences. 20, 6, 1430.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Metatranscriptomics reveals mycoviral populations in the ovine rumen

Hitch, T. C. A., Edwards, J. E. & Gilbert, R. A., 17 Jul 2019, In : FEMS Microbiology Letters. 366, 13, fnz161.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Mice co-administrated with partially hydrolysed whey proteins and prebiotic fibre mixtures show allergen-specific tolerance and a modulated gut microbiota

Kleinjans, L., Veening-Griffioen, D. H., Wehkamp, T., van Bergenhenegouwen, J., Knol, J., Garssen, J., Knippels, L. M. J., Belzer, C. & Jeurink, P. V., 13 Mar 2019, In : Beneficial Microbes. 10, 2, p. 165-178

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Microbial communities in a dynamic in vitro model for the human ileum resemble the human ileal microbiota

Stolaki, M., Minekus, M., Venema, K., Lahti, L., Smid, E. J., Kleerebezem, M. & Zoetendal, E. G., 1 Aug 2019, In : FEMS microbiology ecology. 95, 8, fiz096.

Research output: Contribution to journalArticleAcademicpeer-review

Microbiome data science

Shetty, S. A. & Lahti, L., Oct 2019, In : Journal of Biosciences. 44, 5, 115.

Research output: Contribution to journalArticleAcademicpeer-review

Modification of the equine gastrointestinal microbiota by Jerusalem artichoke meal supplementation

Glatter, M., Borewicz, K., van den Bogert, B., Wensch-Dorendorf, M., Bochnia, M., Greef, J. M., Bachmann, M., Smidt, H., Breves, G. & Zeyner, A., 8 Aug 2019, In : PLoS ONE. 14, 8, e0220553.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Molecular ecology of the yet uncultured bacterial Ct85-cluster in the mammalian gut

Hynönen, U., Zoetendal, E. G., Virtala, A. M. K., Shetty, S., Hasan, S., Jakava-Viljanen, M., de Vos, W. M. & Palva, A., 25 Sep 2019, In : Anaerobe. 102104.

Research output: Contribution to journalArticleAcademicpeer-review

Non-invasive continuous real-time in vivo analysis of microbial hydrogen production shows adaptation to fermentable carbohydrates in mice

van Schothorst, E. M., Fernández Calleja, J. M. S., Konstanti, P., Swarts, J. J. M., Bouwman, L. M. S., Garcia-Campayo, V., Billecke, N., Oosting, A. & Smidt, H., 28 May 2019.

Research output: Contribution to conferencePosterAcademic

Postbiotics and Their Potential Applications in Early Life Nutrition and Beyond

Wegh, C. A. M., Geerlings, S. Y., Knol, J., Roeselers, G. & Belzer, C., 20 Sep 2019, In : International Journal of Molecular Sciences. 20, 19, 4673.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)

Prebiotic oligosaccharides in early life alter gut microbiome development in male mice while supporting influenza vaccination responses

van den Elsen, L. W. J., Tims, S., Jones, A. M., Stewart, A., Stahl, B., Garssen, J., Knol, J., Forbes-Blom, E. E. & van’t Land, B., 18 Feb 2019, In : Beneficial Microbes. 10, 3, p. 279-291 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access

Pro-biotics for a healthy gut

Belzer, C., 26 Mar 2019

Research output: Non-textual formDigital or Visual ProductsOther research output

Open Access

Propionibacterium ruminifibrarum sp. nov., isolated from cow rumen fibrous content

Vaidya, J. D., Hornung, B. V. H., Smidt, H., Edwards, J. E. & Plugge, C. M., 2019, In : International Journal of Systematic and Evolutionary Microbiology. 69, 8, p. 2584-2590

Research output: Contribution to journalArticleAcademicpeer-review

Reconstructing functional networks in the human intestinal tract using synthetic microbiomes

Shetty, S. A., Smidt, H. & de Vos, W. M., 1 Aug 2019, In : Current Opinion in Biotechnology. 58, p. 146-154

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Reductive dechlorination of 1,2-dichloroethane in the presence of chloroethenes and 1,2-dichloropropane as co-contaminants

Peng, P., Schneidewind, U., Haest, P. J., Bosma, T. N. P., Danko, A. S., Smidt, H. & Atashgahi, S., Aug 2019, In : Applied Microbiology and Biotechnology. 103, 16, p. 6837-6849

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Short-term changes of intestinal microbiota composition in preterm infants after two prophylactic doses of vancomycin

d’Haens, E. J., Zwittink, R. D., Belzer, C., Hemels, M. A. C., van Lingen, R. A., Renes, I. B., Knol, J. & van Zoeren-Grobben, D., Oct 2019, In : Acta Paediatrica, International Journal of Paediatrics. 108, 10, p. 1919-1920

Research output: Contribution to journalLetterAcademicpeer-review

1 Citation (Scopus)

Succession of embryonic and the intestinal bacterial communities of Atlantic salmon (Salmo salar) reveals stage-specific microbial signatures

Lokesh, J., Kiron, V., Sipkema, D., Fernandes, J. M. O. & Moum, T., 1 Apr 2019, In : MicrobiologyOpen. 8, 4, e00672.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)

Sugar Beet Pectin Supplementation Did Not Alter Profiles of Fecal Microbiota and Exhaled Breath in Healthy Young Adults and Healthy Elderly

An, R., Wilms, E., Smolinska, A., Hermes, G. D. A., Masclee, A. A. M., de Vos, P., Schols, H. A., van Schooten, F. J., Smidt, H., Jonkers, D. M. A. E., Zoetendal, E. G. & Troost, F. J., 12 Sep 2019, In : Nutrients. 11, 9

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Supplementation of dietary non-digestible oligosaccharides from birth onwards improve social and reduce anxiety-like behaviour in male BALB/c mice

Szklany, K., Wopereis, H., de Waard, C., van Wageningen, T., An, R., van Limpt, K., Knol, J., Garssen, J., Knippels, L. M. J., Belzer, C. & Kraneveld, A. D., 14 Mar 2019, In : Nutritional Neuroscience.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Supplementation of diet with non-digestible oligosaccharides alters the intestinal microbiota, but not arthritis development, in IL-1 receptor antagonist deficient mice

Rogier, R., Ederveen, T. H. A., Wopereis, H., Hartog, A., Boekhorst, J., Van Hijum, S. A. F. T., Knol, J., Garssen, J., Walgreen, B., Helsen, M. M., Van Der Kraan, P. M., Van Lent, P. L. E. M., Van De Loo, F. A. J., Abdollahi-Roodsaz, S. & Koenders, M. I., 8 Jul 2019, In : PLoS ONE. 14, 7, e0219366.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

The dark side of technological advances in analysis of microbial ecosystems

Bailey, M., Thomas, A., Francis, O., Stokes, C. & Smidt, H., 17 Jun 2019, In : Journal of Animal Science and Biotechnology. 10, 1, 49.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

The development of early life gut microbiota in health and allergic disease

Wopereis, H., 2019, Wageningen: Wageningen University. 184 p.

Research output: Thesisinternal PhD, WU

The effect of prebiotic fortified infant formulas on microbiota composition and dynamics in early life

Borewicz, K., Suarez-Diez, M., Hechler, C., Beijers, R., de Weerth, C., Arts, I., Penders, J., Thijs, C., Nauta, A., Lindner, C., Van Leusen, E., Vaughan, E. E. & Smidt, H., 21 Feb 2019, In : Scientific Reports. 9, 1, 2434.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

The potential for pre-, pro- and synbiotics in the management of infants at risk of cow's milk allergy or with cow's milk allergy: An exploration of the rationale, available evidence and remaining questions

Fox, A., Bird, J. A., Fiocchi, A., Knol, J., Meyer, R., Salminen, S., Sitang, G., Szajewska, H. & Papadopoulos, N., 4 Jun 2019, In : World Allergy Organization Journal. 12, 5, 100034.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

The Preterm Gut Microbiota: An Inconspicuous Challenge in Nutritional Neonatal Care

Henderickx, J. G. E., Zwittink, R. D., van Lingen, R. A., Knol, J. & Belzer, C., 2 Apr 2019, In : Frontiers in Cellular and Infection Microbiology. 9, 1 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

The Use of Defined Microbial Communities To Model Host-Microbe Interactions in the Human Gut

Elzinga, J., van der Oost, J., de Vos, W. M. & Smidt, H., 13 Mar 2019, In : Microbiology and Molecular Biology Reviews. 83, 2, p. 1-40

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

Toll-Like Receptor-Dependent Immunomodulatory Activity of Pycnogenol®

Verlaet, A., van der Bolt, N., Meijer, B., Breynaert, A., Naessens, T., Konstanti, P., Smidt, H., Hermans, N., Savelkoul, H. F. J. & Teodorowicz, M., 22 Jan 2019, In : Nutrients. 11, 2

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Trichococcus shcherbakoviae sp. nov., isolated from a laboratory-scale anaerobic EGSB bioreactor operated at low temperature

Parshina, S. N., Strepis, N., Aalvink, S., Nozhevnikova, A. N., Stams, A. J. M. & Sousa, D. Z., 1 Feb 2019, In : International Journal of Systematic and Evolutionary Microbiology. 69, 2, p. 529-534 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)
2018

Assessment of Faecal Microbiota Transplantation on Horses Suffering from Free Faecal Water

Laustsen, L., Edwards, J. E., Smidt, H., van Doorn, D. & Lúthersson, N., 16 Aug 2018, p. 8-8.

Research output: Contribution to conferenceAbstractAcademic

Open Access

Comparative genome and methylome analysis reveals restriction/modification system diversity in the gut commensal Bifidobacterium breve

Bottacini, F., Morrissey, R., Roberts, R. J., James, K., Van Breen, J., Egan, M., Lambert, J., Van Limpt, K., Knol, J., Connell Motherway, M. O. & Van Sinderen, D., 28 Feb 2018, In : Nucleic acids research. 46, 4, p. 1860-1877 18 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)

Erratum to: The sponge microbiome project

Moitinho-Silva, L., Nielsen, S., Amir, A., Gonzalez, A., Ackermann, G. L., Cerrano, C., Astudillo-Garcia, C., Easson, C., Sipkema, D., Liu, F., Steinert, G., Kotoulas, G., McCormack, G. P., Feng, G., Bell, J. J., Vicente, J., Björk, J. R., Montoya, J. M., Olson, J. B., Reveillaud, J. & 20 others, Steindler, L., Pineda, M. C., Marra, M. V., Ilan, M., Taylor, M. W., Polymenakou, P., Erwin, P. M., Schupp, P. J., Simister, R. L., Knight, R., Thacker, R. W., Costa, R., Hill, R. T., Lopez-Legentil, S., Dailianis, T., Ravasi, T., Hentschel, U., Li, Z., Webster, N. S. & Thomas, T., 1 Dec 2018, In : GigaScience. 7, 12, giy145.

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access
1 Citation (Scopus)

Low-dose addition of silver nanoparticles stresses marine plankton communities

Tsiola, A., Toncelli, C., Fodelianakis, S., Michoud, G., Bucheli, T. D., Gavriilidou, A., Kagiorgi, M., Kalantzi, I., Knauer, K., Kotoulas, G., Mylona, K., Papadopoulou, E., Psarra, S., Santi, I., Tsapakis, M., Daffonchio, D., Pergantis, S. A. & Pitta, P., 20 Jun 2018, In : Environmental Science: Nano. 5, 8, p. 1965-1980

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)
Open Access
2 Citations (Scopus)

Successional changes in rhizosphere microbiome composition and functions during induction of the soil immune response

Gomez Exposito, R., de Bruijn, I., Postma, J. & Raaijmakers, J. M., 19 Feb 2018.

Research output: Contribution to conferencePosterAcademic

Targeting the gut microbiota to influence brain development and function in early life

Wang, S., Harvey, L., Martin, R., van der Beek, E. M., Knol, J., Cryan, J. F. & Renes, I. B., Dec 2018, In : Neuroscience and Biobehavioral Reviews. 95, p. 191-201

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)