Research Output

2014

Molecular ecological tools to decipher the role of our microbial mass in obesity

Hermes, G. D. A., Zoetendal, E. G. & Smidt, H., 5 Jun 2014, In : Beneficial Microbes. 6, 1, p. 61-81 21 p.

Research output: Contribution to journalArticleAcademicpeer-review

9 Citations (Scopus)
2016

Infant formula containing galacto-And fructo-oligosaccharides and Bifidobacterium breve M-16V supports adequate growth and tolerance in healthy infants in a randomised, controlled, double-blind, prospective, multicentre study

Abrahamse-Berkeveld, M., Alles, M., Franke-Beckmann, E., Helm, K., Knecht, R., Köllges, R., Sandner, B., Knol, J., Ben Amor, K. & Bufe, A., 8 Jan 2016, In : Journal of Nutritional Science. 5, e42.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

Oral treatment with Eubacterium hallii improves insulin sensitivity in db/db mice

Udayappan, S., Manneras-Holm, L., Chaplin-Scott, A., Belzer, C., Herrema, H., Dallinga-Thie, G. M., Duncan, S. H., Stroes, E. S. G., Groen, A. K., Flint, H. J., Backhed, F., De Vos, W. M. & Nieuwdorp, M., 6 Jul 2016, In : npj Biofilms and Microbiomes. 2, 16009.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
34 Citations (Scopus)
2018

Assessment of Faecal Microbiota Transplantation on Horses Suffering from Free Faecal Water

Laustsen, L., Edwards, J. E., Smidt, H., van Doorn, D. & Lúthersson, N., 16 Aug 2018, p. 8-8.

Research output: Contribution to conferenceAbstractAcademic

Open Access

Comparative genome and methylome analysis reveals restriction/modification system diversity in the gut commensal Bifidobacterium breve

Bottacini, F., Morrissey, R., Roberts, R. J., James, K., Van Breen, J., Egan, M., Lambert, J., Van Limpt, K., Knol, J., Connell Motherway, M. O. & Van Sinderen, D., 28 Feb 2018, In : Nucleic acids research. 46, 4, p. 1860-1877 18 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)

Erratum to: The sponge microbiome project

Moitinho-Silva, L., Nielsen, S., Amir, A., Gonzalez, A., Ackermann, G. L., Cerrano, C., Astudillo-Garcia, C., Easson, C., Sipkema, D., Liu, F., Steinert, G., Kotoulas, G., McCormack, G. P., Feng, G., Bell, J. J., Vicente, J., Björk, J. R., Montoya, J. M., Olson, J. B., Reveillaud, J. & 20 others, Steindler, L., Pineda, M. C., Marra, M. V., Ilan, M., Taylor, M. W., Polymenakou, P., Erwin, P. M., Schupp, P. J., Simister, R. L., Knight, R., Thacker, R. W., Costa, R., Hill, R. T., Lopez-Legentil, S., Dailianis, T., Ravasi, T., Hentschel, U., Li, Z., Webster, N. S. & Thomas, T., 1 Dec 2018, In : GigaScience. 7, 12, giy145.

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access
1 Citation (Scopus)

Low-dose addition of silver nanoparticles stresses marine plankton communities

Tsiola, A., Toncelli, C., Fodelianakis, S., Michoud, G., Bucheli, T. D., Gavriilidou, A., Kagiorgi, M., Kalantzi, I., Knauer, K., Kotoulas, G., Mylona, K., Papadopoulou, E., Psarra, S., Santi, I., Tsapakis, M., Daffonchio, D., Pergantis, S. A. & Pitta, P., 20 Jun 2018, In : Environmental Science: Nano. 5, 8, p. 1965-1980

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)
Open Access
2 Citations (Scopus)

Successional changes in rhizosphere microbiome composition and functions during induction of the soil immune response

Gomez Exposito, R., de Bruijn, I., Postma, J. & Raaijmakers, J. M., 19 Feb 2018.

Research output: Contribution to conferencePosterAcademic

Targeting the gut microbiota to influence brain development and function in early life

Wang, S., Harvey, L., Martin, R., van der Beek, E. M., Knol, J., Cryan, J. F. & Renes, I. B., Dec 2018, In : Neuroscience and Biobehavioral Reviews. 95, p. 191-201

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)
2019

0046 - Organoids as models to study probiotics

van der Hee, B., Loonen, L. M. P., Taverne, N., Taverne-Thiele, J. J., Smidt, H. & Wells, J. M., 19 Jun 2019, p. 57. 1 p.

Research output: Contribution to conferenceAbstractAcademic

Akkermansia muciniphila ameliorates the age-related decline in colonic mucus thickness and attenuates immune activation in accelerated aging Ercc1 -/Δ7 mice

van der Lugt, B., van Beek, A. A., Aalvink, S., Meijer, B., Sovran, B., Vermeij, W. P., Brandt, R. M. C., de Vos, W. M., Savelkoul, H. F. J., Steegenga, W. T. & Belzer, C., 8 Mar 2019, In : Immunity and Ageing. 16, 1, 6.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Akkermansia muciniphila Exerts Lipid-Lowering and Immunomodulatory Effects without Affecting Neointima Formation in Hyperlipidemic APOE*3-Leiden.CETP Mice

Katiraei, S., de Vries, M. R., Costain, A. H., Thiem, K., Hoving, L. R., van Diepen, J. A., Smits, H. H., Bouter, K. E., Rensen, P. C. N., Quax, P. H. A., Nieuwdorp, M., Netea, M. G., de Vos, W. M., Cani, P. D., Belzer, C., van Dijk, K. W., Berbée, J. F. P. & van Harmelen, V., 6 Aug 2019, In : Molecular Nutrition and Food Research. 1900732.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Anaerobic fungal communities differ along the horse digestive tract

Mura, E., Edwards, J., Kittelmann, S., Kaerger, K., Voigt, K., Mrázek, J., Moniello, G. & Fliegerova, K., Mar 2019, In : Fungal Biology. 123, 3, p. 240-246

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Antibiotics-induced monodominance of a novel gut bacterial order

Hildebrand, F., Moitinho-Silva, L., Blasche, S., Jahn, M. T. T., Gossmann, T. I., Heuerta Cepas, J., Hercog, R., Luetge, M., Bahram, M., Pryszlak, A., Alves, R. J., Waszak, S. M., Zhu, A., Ye, L., Costea, P. I., Aalvink, S., Belzer, C., Forslund, S. K., Sunagawa, S., Hentschel, U. & 4 others, Merten, C., Patil, K. R., Benes, V. & Bork, P., 2019, In : Gut. 68, 10

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)

A specific synbiotic-containing amino acid-based formula in dietary management of cow's milk allergy: A randomized controlled trial

Fox, A. T., Wopereis, H., van Ampting, M. T. J., Oude Nijhuis, M. M., Butt, A. M., Peroni, D. G., Vandenplas, Y., Candy, D. C. A., Shah, N., West, C. E., Garssen, J., Harthoorn, L. F., Knol, J. & Michaelis, L. J., 15 Jan 2019, In : Clinical and Translational Allergy. 9, 1, 5.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

A specific synbiotic-containing amino acid-based formula restores gut microbiota in non-IgE mediated cow's milk allergic infants: A randomized controlled trial

Wopereis, H., Van Ampting, M. T. J., Cetinyurek-Yavuz, A., Slump, R., Candy, D. C. A., Butt, A. M., Peroni, D. G., Vandenplas, Y., Fox, A. T., Shah, N., Roeselers, G., Harthoorn, L. F., Michaelis, L. J., Knol, J. & West, C. E., 31 May 2019, In : Clinical and Translational Allergy. 9, 1, 27.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Aspergillus niger citrate exporter revealed by comparison of two alternative citrate producing conditions

Odoni, D. I., Vazquez-Vilar, M., van Gaal, M. P., Schonewille, T., Martins Dos Santos, V. A. P., Tamayo-Ramos, J. A., Suarez-Diez, M. & Schaap, P. J., 1 Apr 2019, In : FEMS Microbiology Letters. 366, 7, fnz071.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Assessment of the Accuracy of High-Throughput Sequencing of the ITS1 Region of Neocallimastigomycota for Community Composition Analysis

Edwards, J. E., Hermes, G. D. A., Kittelmann, S., Nijsse, B. & Smidt, H., 18 Oct 2019, In : Frontiers in Microbiology. 10, 2370.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Associated bacteria of Botryococcus braunii (Chlorophyta)

Gouveia, J. D., Lian, J., Steinert, G., Smidt, H., Sipkema, D., Wijffels, R. H. & Barbosa, M. J., 27 Mar 2019, In : PeerJ. 2019, 3, e6610.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Association between Psychosocial Stress and Fecal Microbiota in Pregnant Women

Hechler, C., Borewicz, K., Beijers, R., Saccenti, E., Riksen-Walraven, M., Smidt, H. & de Weerth, C., 14 Mar 2019, In : Scientific Reports. 9, 1, 4463.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)

Breakthrough in Marine Invertebrate Cell Culture: Sponge Cells Divide Rapidly in Improved Nutrient Medium

Conkling, M., Hesp, K., Munroe, S., Sandoval, K., Martens, D. E., Sipkema, D., Wijffels, R. H. & Pomponi, S. A., 21 Nov 2019, In : Scientific Reports. 9, 17321.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Can bacteria in your gut prevent diseases? The health implications of microbiota | WURcast

Belzer, C., 21 Mar 2019

Research output: Non-textual formDigital or Visual ProductsOther research output

Open Access

Causality in microbiome research | WURcast

Belzer, C., 12 Mar 2019

Research output: Non-textual formDigital or Visual ProductsOther research output

Open Access

Characterisation of the effect of day length, and associated differences in dietary intake, on the gut microbiota of Soay sheep

Thomas, N. A., Olvera-Ramírez, A. M., Abecia, L., Adam, C. L., Edwards, J. E., Cox, G. F., Findlay, P. A., Destables, E., Wood, T. A. & McEwan, N. R., 1 Sep 2019, In : Archives of Microbiology. 201, 7, p. 889-896 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Characterization of bacterial community in the gut of Penaeus monodon and its culture water in shrimp ponds

Le, D. H., Nguyen, N. T., Dang, O. H. T., Steinert, G., Tran, T. T., Vu, T. H., Sipkema, D. & Chu, H. H., 1 Jan 2019, In : Turkish Journal of Fisheries and Aquatic Sciences. 19, 11, p. 977-986

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Comparison of different invasive and non-invasive methods to characterize intestinal microbiota throughout a production cycle of broiler chickens

Kers, J. G., Fischer, E. A. J., Stegeman, J. A., Smidt, H. & Velkers, F. C., 1 Oct 2019, In : Microorganisms. 7, 10, 431.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Contribution of gut microbiota to metabolism of dietary glycine betaine in mice and in vitro colonic fermentation

Koistinen, V. M., Kärkkäinen, O., Borewicz, K., Zarei, I., Jokkala, J., Micard, V., Rosa-Sibakov, N., Auriola, S., Aura, A. M., Smidt, H. & Hanhineva, K., 10 Jul 2019, In : Microbiome. 7, 1, 103.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Correlating Infant Fecal Microbiota Composition and Human Milk Oligosaccharide Consumption by Microbiota of 1-Month-Old Breastfed Infants

Borewicz, K., Gu, F., Saccenti, E., Arts, I. C. W., Penders, J., Thijs, C., van Leeuwen, S. S., Lindner, C., Nauta, A., van Leusen, E., Schols, H. A. & Smidt, H., 24 Apr 2019, In : Molecular Nutrition and Food Research. 1801214.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Cultivation of Sponge-Associated Bacteria from Agelas sventres and Xestospongia muta Collected from Different Depths

Indraningrat, A. A. G., Micheller, S., Runderkamp, M., Sauerland, I., Becking, L. E., Smidt, H. & Sipkema, D., 11 Oct 2019, In : Marine Drugs. 17, 10, 578.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Depth matters: (anti) microbial diversity of marine sponges

Indraningrat, A. A. G., 2019, Wageningen: Wageningen University. 222 p.

Research output: Thesisinternal PhD, WU

Development of omics-based protocols for the microbiological characterization of multi-strain formulations marketed as probiotics: the case of VSL#3

Mora, D., Filardi, R., Arioli, S., Boeren, S., Aalvink, S. & de Vos, W. M., Nov 2019, In : Microbial Biotechnology. 12, 6, p. 1371-1386

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Differences in Fecal Gut Microbiota, Short-Chain Fatty Acids and Bile Acids Link Colorectal Cancer Risk to Dietary Changes Associated with Urbanization Among Zimbabweans

Katsidzira, L., Ocvirk, S., Wilson, A., Li, J., Mahachi, C. B., Soni, D., DeLany, J., Nicholson, J. K., Zoetendal, E. G. & O’Keefe, S. J. D., Aug 2019, In : Nutrition and Cancer. 71, 8, p. 1313-1324

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Differences in gut microbiota composition of laying hen lines divergently selected on feather pecking

van der Eijk, J. A. J., de Vries, H. J. A., Kjaer, J. B., Naguib, M., Kemp, B., Smidt, H., Rodenburg, T. B. & Lammers, A., Dec 2019, In : Poultry Science. 98, 12, p. 7009-7021 pez336.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Discovered by genomics putative reductive dehalogenases with N-terminus transmembrane helixes

Atashgahi, S., 1 May 2019, In : FEMS microbiology ecology. 95, 5, fiz048.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Diversity of tryptophan halogenases in sponges of the genus Aplysina

Gutleben, J., Koehorst, J. J., McPherson, K., Pomponi, S., Wijffels, R. H., Smidt, H. & Sipkema, D., 1 Aug 2019, In : FEMS microbiology ecology. 95, 8, fiz108.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Dynamics of the Gut Microbiota in Children Receiving Selective or Total Gut Decontamination Treatment during Hematopoietic Stem Cell Transplantation

Bekker, V., Zwittink, R. D., Knetsch, C. W., Sanders, I. M. J. G., Berghuis, D., Heidt, P. J., Vossen, J. M. J. J., de Vos, W. M., Belzer, C., Bredius, R. G. M., van‘t Hof, P. J., Lankester, A. C. & Kuijper, E. J., Jun 2019, In : Biology of Blood and Marrow Transplantation. 25, 6, p. 1164-1171

Research output: Contribution to journalArticleAcademicpeer-review

Ecological and biotechnological aspects of Aplysina-associated microorganisms

Gutleben, J., 2019, Wageningen: Wageningen University. 211 p.

Research output: Thesisinternal PhD, WU

Open Access

Effect of removal of bacteria on the biomass and extracellular carbohydrate productivity of Botryococcus braunii

Gouveia, J. D., Moers, A., Griekspoor, Y., van den Broek, L. A. M., Springer, J., Sijtsma, L., Sipkema, D., Wijffels, R. H. & Barbosa, M. J., Dec 2019, In : Journal of Applied Phycology. 31, 6, p. 3453-3463 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Equine anaerobic fungi: Key taxa of central importance to dietary fibre degradation

Edwards, J. E., 15 Feb 2019, Small Things: European Equine Health & Nutrion Congress . 9 ed. p. 23-31

Research output: Chapter in Book/Report/Conference proceedingConference paper

Open Access
Open Access

Genetic algorithm as an optimization tool for the development of sponge cell culture media

Munroe, S., Sandoval, K., Martens, D. E., Sipkema, D. & Pomponi, S. A., Mar 2019, In : In Vitro Cellular and Developmental Biology - Animal. 55, 3, p. 149-158

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Gut microbiota from infant with cow’s milk allergy promotes clinical and immune features of atopy in a murine model

Mauras, A., Wopereis, H., Yeop, I., Esber, N., Delannoy, J., Labellie, C., Reygner, J., Kapel, N., Slump, R., van Eijndthoven, T., Rutten, L., Knol, J., Garssen, J., Harthoorn, L. F., Butel, M. J., Bajaj-Elliott, M., Hartog, A. & Waligora-Dupriet, A. J., Sep 2019, In : Allergy: European Journal of Allergy and Clinical Immunology. 74, 9, p. 1790-1793

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access