Research Output 1936 2020

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internal PhD, WU
2019

Artificial viral capsid proteins: mimicking nature to deliver medicines

Willems, L., 2019, Wageningen: Wageningen University. 139 p.

Research output: Thesisinternal PhD, WU

Open Access
Capsid Proteins
Viral Proteins
DNA
Viruses
RNA

Bioprospecting of Trichococcus species

Strepis, N., 2019, Wageningen: Wageningen University. 228 p.

Research output: Thesisinternal PhD, WU

Open Access
Trichococcus
inulin
propanediols
Thiocystis minor
screening

Depth matters: (anti) microbial diversity of marine sponges

Indraningrat, A. A. G., 2019, Wageningen: Wageningen University. 222 p.

Research output: Thesisinternal PhD, WU

sponge
community composition
antimicrobial activity
deep sea
metabolite

Double kill : the DNase and RNase activity of CRISPR-Cas type III systems

Zhu, Y., 2019, Wageningen: Wageningen University. 184 p.

Research output: Thesisinternal PhD, WU

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
Deoxyribonucleases
Ribonucleases
RNA
Immune system

Ecological and biotechnological aspects of Aplysina-associated microorganisms

Gutleben, J., 2019, Wageningen: Wageningen University. 211 p.

Research output: Thesisinternal PhD, WU

Porifera
microorganisms
secondary metabolites
Otus
microbial communities
Microbiota
Eubacterium
Ecosystem
Diet
Dietary Carbohydrates

Electrochemically active bacteria in microbial fuel cells

Michaelidou, U., 2019, Wageningen: Wageningen University. 288 p.

Research output: Thesisinternal PhD, WU

Microbial fuel cells
Bacteria
Electrons
Electrodes
Genes
Synthesis gas
Fermentation
Enzymes
Metabolism
Gases

Feel the burn: a collection of stories on hot’n’sharp DNA engineering

Mougiakos, I., 2019, Wageningen: Wageningen University. 301 p.

Research output: Thesisinternal PhD, WU

Open Access
Bacteria
Clustered Regularly Interspaced Short Palindromic Repeats
DNA
Genes
Metabolic engineering
Open Access
wild animals
intestinal microorganisms
domestic animals
environmental factors
Lemuridae

Microbial transformation of organic and inorganic halogen compounds

Peng, P., 2019, Wageningen: Wageningen University. 182 p.

Research output: Thesisinternal PhD, WU

Open Access
organohalogen
halogen
chloroform
bacterium
dechlorination
Clustered Regularly Interspaced Short Palindromic Repeats
Temperature
DNA
Proteins
Geobacillus
Open Access
biofouling
membrane
biofilm
technological process
reverse osmosis

The development of early life gut microbiota in health and allergic disease

Wopereis, H., 2019, Wageningen: Wageningen University. 184 p.

Research output: Thesisinternal PhD, WU

Health
Prebiotics
Synbiotics
Infant Formula
Bifidobacterium

The journey of prokaryotic argonaute proteins: From fundamentals to application

Hegge, J. W., 2019, Wageningen: Wageningen University. 209 p.

Research output: Thesisinternal PhD, WU

Open Access
Argonaute Proteins
Clostridium
Single-Stranded DNA
Bacteria
Genes

Zooming in: from multi-omics to single function in hyperthermophilic archaeon Sulfolobus solfataricus

Sierocinski, P., 2019, Wageningen: Wageningen University. 209 p.

Research output: Thesisinternal PhD, WU

Open Access
2018

Access denied: A closer look at anti-phage defense mechanisms

Vlot, M., 2018, Wageningen: Wageningen University. 178 p.

Research output: Thesisinternal PhD, WU

Open Access
defense mechanisms
bacteriophages
microorganisms
DNA
infection

Assessing rumen microbial composition and fibre attachment in dairy cows

Vaidya, J. D., 2018, Wageningen: Wageningen University. 181 p.

Research output: Thesisinternal PhD, WU

Open Access

Cross-feeding interactions of gut symbionts driven by human milk oligosaccharidesand mucins

Chia, L. W., 2018, Wageningen: Wageningen University. 187 p.

Research output: Thesisinternal PhD, WU

Open Access
Mucins
Human Milk
Oligosaccharides
Butyrates
Polysaccharides

Degradation of fuel components

van der Waals, M. J., 2018, Wageningen: Wageningen University. 175 p.

Research output: Thesisinternal PhD, WU

Open Access
MTBE
ether
degradation
benzene
alcohol
Screening
Enzymes
Arabinose
Escherichia coli
Xylose

Energy conservation mechanisms and electron transfer in syntrophic propionate-oxidizing microbial consortia

Sedano Núñez, V. T., 2018, Wageningen: Wageningen University. 206 p.

Research output: Thesisinternal PhD, WU

Open Access
Propionates
formic acid
Energy conservation
Sulfates
Electrons

Gastrointestinal function and microbiota development in preterm infants

Zwittink, R. D., 2018, Wageningen: Wageningen University. 164 p.

Research output: Thesisinternal PhD, WU

Open Access
Microbiota
Premature Infants
Gestational Age
Bifidobacterium
Anti-Bacterial Agents
Open Access
Prebiotics
Human Milk
Polysaccharides
Oligosaccharides
Microbiota

Interactive functional networks in microbiota

Hornung, B. V. H., 2018, Wageningen: Wageningen University. 176 p.

Research output: Thesisinternal PhD, WU

Open Access
rumen
carbohydrates
cows
transcriptome
microbial communities

Metabolic characterization and viable delivery of Akkermansia muciniphila for its future application

van der Ark, K., 2018, Wageningen: Wageningen University. 236 p.

Research output: Thesisinternal PhD, WU

Open Access
genetically engineered microorganisms
bacteria
emulsions
oxygen
development aid

Organic acid production from starchy waste by gut derived microorganisms

Palakawong Na Ayudthaya, S., 2018, Wageningen: Wageningen University. 219 p.

Research output: Thesisinternal PhD, WU

Open Access
organic acid
microorganism
starch
fluid
pig

Towards biobased ethyl acetate and beyond: Identification and application of the elusive Eat1 enzyme

Kruis, A. J., 2018, Wageningen: Wageningen University. 251 p.

Research output: Thesisinternal PhD, WU

Open Access
Acetyltransferases
Ethanol
Esters
Yeast
Enzymes
2017

Adapting to change : on the mechanism of type I-E CRISPR-Cas defence

Künne, T. A., 2017, Wageningen: Wageningen University. 239 p.

Research output: Thesisinternal PhD, WU

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
RNA
Nucleotides
Electrophoretic Mobility Shift Assay
Seeds

Anaerobic microbial processes for energy conservation and biotransformation of pollutants

da Luz Ferreira Martins Paulo, L., 2017, Wageningen: Wageningen University. 234 p.

Research output: Thesisinternal PhD, WU

Open Access
biotransformation
energy conservation
dechlorination
pollutant
metal
methane
rumen
dairy cows
methane production
metabolism

Bacteriophage: from exploration to exploitation

Nobrega, F. L., 2017, Wageningen: Wageningen University. 338 p.

Research output: Thesisinternal PhD, WU

Bacteriophages
Host Specificity
Genome
Breast Neoplasms
Research

Biotechnological application of microbial sulfidogenesis at haloalkaline conditions

Sousa, J. A. B., 2017, Wageningen: Wageningen University. 247 p.

Research output: Thesisinternal PhD, WU

Open Access
sulfide
thiosulfate
salt
sulfate
transform
Open Access
exopolysaccharides
hydrocarbons
bacteria
microalgae
bacterial communities

Ecophysiology of sulfate-reducing bacteria and syntrophic communities in marine anoxic sediments

Özüölmez, D., 2017, Wageningen: Wageningen University. 225 p.

Research output: Thesisinternal PhD, WU

Open Access
ecophysiology
anoxic sediment
sulfate-reducing bacterium
marine sediment
sulfate

Lignocellulolytic capacities of Geobacillus thermodenitrificans: towards consolidated bioprocessing

Daas, M. J. A., 2017, Wageningen: Wageningen University. 180 p.

Research output: Thesisinternal PhD, WU

Open Access
Bacillus thermodenitrificans
bioprocessing
Geobacillus
endo-1,4-beta-glucanase
xylan

Physiology and application of sulfur-reducing microorganisms from acidic environments

Florentino, A. P., 2017, Wageningen: Wageningen University. 264 p.

Research output: Thesisinternal PhD, WU

Open Access
sulfur
physiology
microorganisms
Desulfurella
sulfides

Probing the bacterial cell wall with chemical biology tools

Sminia, T. J., 2017, Wageningen: Wageningen University. 196 p.

Research output: Thesisinternal PhD, WU

Open Access
Labeling
Peptidoglycan
Cells
Oligosaccharides
Escherichia coli
codons
membrane proteins
engineering
Escherichia coli
translation (genetics)
2016

Akkermansia species: phylogeny, physiology and comparative genomics

Ouwerkerk, J. P., 2016, Wageningen: Wageningen University. 178 p.

Research output: Thesisinternal PhD, WU

Comparative Physiology
Phylogeny
Genomics
Mucins
Gastrointestinal Tract

Anaerobic digestion of cellulose and hemicellulose in the presence of humic acids

Azman, S., 2016, Wageningen: Wageningen University. 189 p.

Research output: Thesisinternal PhD, WU

Open Access
anaerobic digestion
humic acids
hemicellulose
cellulose
hydrolysis

Antibiotic resistance reservoirs: the cases of sponge and human gut microbiota

Versluis, D., 2016, Wageningen: Wageningen University. 197 p.

Research output: Thesisinternal PhD, WU

Open Access
Porifera
Microbial Drug Resistance
Anti-Bacterial Agents
Genes
Bacteria

Assessing the effects of chemicals on aquatic microbial ecosystems

Rocha Dimitrov, M., 17 Mar 2016, Wageningen: Wageningen University. 264 p.

Research output: Thesisinternal PhD, WU

Open Access

Biofunctionalized nanoporous aluminum oxide culture chips: for capture and growth of bacteria

Debrassi, A., 2016, Wageningen: Wageningen University. 218 p.

Research output: Thesisinternal PhD, WU

Open Access
Aluminum Oxide
Bacteria
Mannosides
Organophosphonates
Monolayers

Breaking down barriers: construction of a hybrid heterochiral membrane

Siliakus, M., 2016, Wageningen: Wageningen University. 237 p.

Research output: Thesisinternal PhD, WU

Open Access
Lipids
Membranes
Extreme Cold
Bacteria
Butanols

Ecophysiology and environmental distribution of organohalide-respiring bacteria

Lu, Y., 2016, Wageningen: Wageningen University. 239 p.

Research output: Thesisinternal PhD, WU

Open Access
ecophysiology
bacterium
pristine environment
guild
bioremediation

Ecophysiology of novel intestinal butyrate-producing bacteria

Bui, T. P. N., 2016, Wageningen: Wageningen University. 202 p.

Research output: Thesisinternal PhD, WU

Open Access
Butyrates
Bacteria
Lysine
Acetates
Acetyl Coenzyme A

Interplay between gut microbiota and antibiotics

de Jesus Bello Gonzalez, T., 2016, Wageningen: Wageningen University. 293 p.

Research output: Thesisinternal PhD, WU

Open Access
Anti-Bacterial Agents
Microbial Drug Resistance
Intensive Care Units
Microbiota
Bacteria

Microbial interactions in the fish gut

Giatsis, C., 2016, Wageningen: Wageningen University. 196 p.

Research output: Thesisinternal PhD, WU

Open Access
microbial communities
digestive system
intestinal microorganisms
fish
aquaculture

Mining microbiota signatures in human intestinal tract metagenomes

Tims, S., 2016, Wageningen: Wageningen University. 264 p.

Research output: Thesisinternal PhD, WU

Open Access