Projects per year
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Finished
Lactate production from C1 substrates using thermophilic bacilli
Paredes Barrada, M. (PhD candidate), van Kranenburg, R. (Promotor) & Claassens, N. J. H. P. (Co-promotor)
1/02/21 → 30/06/25
Project: PhD
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Paving the C1-route: targeted genome engineering for synthetic one-carbon assimilation
Yilmaz, S. (PhD candidate), van der Oost, J. (Promotor) & Claassens, N. J. H. P. (Co-promotor)
1/02/20 → 6/09/24
Project: PhD
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A toolbox to explore the optimal interactions between human milk sugars and gut microbiota
Ioannou, N. (PhD candidate), Belzer, C. (Promotor) & Knol, J. (Co-promotor)
1/02/20 → 21/03/25
Project: PhD
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Using cultivation dependent and independent methods to study the ecology and physiology of anaerobic microbial communities
ter Horst, J. (PhD candidate), Ettema, T. (Promotor), Geesink, P. (Co-promotor) & Machado de Sousa, D. (Co-promotor)
1/10/19 → 6/09/24
Project: PhD
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The quest of the Argonautes - from myth to reality (ARGO)
Bouzetos, E. (PhD candidate), van der Oost, J. (Promotor) & Staals, R. (Co-promotor)
1/10/19 → 4/10/24
Project: PhD
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Isolation of novel biocatalysts for syngas conversion
Galani, A. (PhD candidate), Machado de Sousa, D. (Promotor) & Sipkema, D. (Co-promotor)
1/10/19 → 12/06/25
Project: PhD
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Building a synthetic cell (BaSyC).
Olivi, L. (PhD candidate), van der Oost, J. (Promotor), Claassens, N. J. H. P. (Co-promotor) & Staals, R. (Co-promotor)
1/09/19 → 22/03/24
Project: PhD
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Survival strategies and growth of acidophiles
Egas, R. (PhD candidate), Machado de Sousa, D. (Promotor) & Sanchez Andrea, I. (Co-promotor)
26/08/19 → 23/04/24
Project: PhD
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How does fiber-induced colonic fermentation affect metabolic syndrome?
Puhlmann-Manusama, M.-L. (PhD candidate), Feskens, E. (Promotor), Smidt, H. (Promotor) & de Vos, W. (Promotor)
1/01/19 → 9/10/24
Project: PhD
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The exploration & exploitation of CRISPR-Cas type III defence strategies.
Steens, J. (PhD candidate), Staals, R. (Promotor) & van der Oost, J. (Promotor)
1/01/19 → 17/05/24
Project: PhD
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Gene drive: friend or foe? Surpassing Mendelian inheritance rules using CRISPR-powered gene drives
Nieuwenweg, C. (PhD candidate), Staals, R. (Promotor) & van der Oost, J. (Promotor)
1/11/18 → 28/06/24
Project: PhD
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Effect of non-digestible carbohydrates on microbiota composition and activity: towards microbiota stratification
Liu, Z. (PhD candidate), Smidt, H. (Promotor) & Zoetendal, E. (Co-promotor)
1/10/18 → 14/09/23
Project: PhD
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Assessing, Regulating, and Adapting Cas nucleases
Swartjes, T. (PhD candidate), van der Oost, J. (Promotor) & Staals, R. (Co-promotor)
1/10/18 → 3/05/23
Project: PhD
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Gut microbiota development and its relations to child mental development and health
Ou, Y. (PhD candidate), Smidt, H. (Promotor) & Belzer, C. (Co-promotor)
1/10/18 → 14/04/23
Project: PhD
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Exploiting the anti-CRISPR potential to enhance the CRISPR genome engineering toolbox.
Trasanidou, D. (PhD candidate) & van der Oost, J. (Promotor)
3/09/18 → 16/05/23
Project: PhD
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Early life effect of human milk oligosaccharides and prebiotics on antibiotic associated gut microbiota changes and health.
Endika, M. (PhD candidate) & Smidt, H. (Promotor)
3/09/18 → 14/11/23
Project: PhD
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Anaerobic microbiology of Black Sea
Fischer, P. (PhD candidate), Machado de Sousa, D. (Promotor) & Stams, F. (Promotor)
1/08/18 → 12/05/23
Project: PhD
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Novel approaches for microbial syngas conversion to chemical building blocks
Dykstra, J. (PhD candidate), Machado de Sousa, D. (Promotor), van der Oost, J. (Promotor) & Kengen, S. (Co-promotor)
1/06/18 → 3/07/23
Project: PhD
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Building a Synthetic Cell (BaSyC).
Finger Bou, M. (PhD candidate), van der Oost, J. (Promotor), Claassens, N. J. H. P. (Co-promotor) & Staals, R. (Co-promotor)
1/05/18 → 8/09/23
Project: PhD
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Synthetic microbial consortia for syngas fermentation
Parera Olm, I. (PhD candidate), Machado de Sousa, D. (Promotor) & Suarez-Diez, M. (Promotor)
16/04/18 → 27/10/23
Project: PhD
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Danone Early Life.
Schimmel, P. (PhD candidate), Knol, J. (Promotor) & Belzer, C. (Co-promotor)
3/04/18 → 6/12/22
Project: PhD
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Eat2BeNice.
Konstanti, P. (PhD candidate), Belzer, C. (Promotor) & Smidt, H. (Promotor)
1/03/18 → 14/10/24
Project: PhD
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From healthy defecation to functional constipation in children and adults a clinical and microbiological perspective
Wegh, C. (PhD candidate), Smidt, H. (Promotor) & Belzer, C. (Co-promotor)
1/02/18 → 11/11/22
Project: PhD
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Development of a novel, interdisciplinary model to study interactions between foodborne xenobiotics, the intestinal microbiome and the intestinal epithelium.
van Dongen, K. (PhD candidate), Rietjens, I. (Promotor), Beekmann, K. (Co-promotor) & Belzer, C. (Co-promotor)
1/12/17 → 10/06/22
Project: PhD
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Microbes, models and mucins: Modelling host-microbe interactions at the intestinal mucus layer in vitro
Elzinga, J. (PhD candidate), Smidt, H. (Promotor) & Belzer, C. (Co-promotor)
15/11/17 → 31/05/23
Project: PhD
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The effect of a synbiotic nutritional supplement on white matter injury in preterm infants.
Henderickx, J. (PhD candidate), Knol, J. (Promotor) & Belzer, C. (Co-promotor)
16/10/17 → 25/03/22
Project: PhD
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Biobased Production of Valuable Ester Compounds by a Novel Type Alcohol Acetyl Transferase.
Patinios, C. (PhD candidate), Weusthuis, R. (Promotor), van der Oost, J. (Promotor) & Kengen, S. (Co-promotor)
9/10/17 → 22/04/22
Project: PhD
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ShaPR (Shaping CRISPR scissors and synthetic tools for multiplexed, high-throughput genome editing in yeast).
Adiego Pérez, B. (PhD candidate), van der Oost, J. (Promotor) & D'Adamo, S. (Co-promotor)
1/10/17 → 13/09/22
Project: PhD
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Unravelling ecological concepts that drive general composition patterns, stability, perturbations, and major metabolite production in the intestine.
Wang, T. (PhD candidate), Smidt, H. (Promotor) & Zoetendal, E. (Co-promotor)
1/09/17 → 21/06/22
Project: PhD
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"Mare incognita"- from exploration to exploitation: Sponge microbiota metabolites for improved gut health.
Sales E Santos Loureiro, C. (PhD candidate), Medema, M. (Promotor), Sipkema, D. (Promotor) & van der Oost, J. (Promotor)
1/09/17 → 2/10/23
Project: PhD
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Diet as treatment of irritable bowel syndrome.
Rijnaarts-Modder, I. (PhD candidate), Witteman, B. (Promotor), Zoetendal, E. (Co-promotor), de Roos, N. (Co-promotor) & de Wit, N. (Co-promotor)
1/09/17 → 24/06/22
Project: PhD
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Towards a synthetic cell: designing, testing and optimizing functional genomic modules in E. coli
Houkes, J. (PhD candidate), van der Oost, J. (Promotor) & Claassens, N. J. H. P. (Co-promotor)
1/09/17 → 11/01/23
Project: PhD
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Tailored microalgae as a sustainable oil crop production platform.
Naduthodi, M. (PhD candidate), Barbosa, M. (Promotor), van der Oost, J. (Promotor) & D'Adamo, S. (Co-promotor)
1/09/17 → 13/12/21
Project: PhD
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Akkermansia muciniphila as a model organism representing Verrucomicrobia in the gut.
Geerlings, S. (PhD candidate), de Vos, W. (Promotor) & Belzer, C. (Co-promotor)
1/09/17 → 18/01/23
Project: PhD
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Acidothermophilic Sulphur Bioreduction
van der Graaf, L. (PhD candidate), Stams, F. (Promotor) & Sanchez Andrea, I. (Co-promotor)
1/07/17 → 5/07/22
Project: PhD
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Zooming into the sponge microbiome in the omics era
Gavriilidou, M. (PhD candidate), Sipkema, D. (Promotor) & Smidt, H. (Promotor)
18/04/17 → 25/05/22
Project: PhD
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Bioprocess engineering for ethyl acetate production
Bohnenkamp, A. (PhD candidate), Weusthuis, R. (Promotor), Wijffels, R. (Promotor) & Kengen, S. (Co-promotor)
1/04/17 → 12/11/21
Project: PhD
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Improving heterologous protein production by tweaking transcript elements.
Nieuwkoop, T. (PhD candidate), van der Oost, J. (Promotor) & Claassens, N. J. H. P. (Co-promotor)
16/01/17 → 8/12/21
Project: PhD
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The role of the gut microbiota in toxicity and risk assessment of masked Fusarium mycotoxins.
Jin, J. (PhD candidate) & Rietjens, I. (Promotor)
31/12/16 → 9/11/22
Project: PhD
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Resilience and stress response pathways of microorganisms used for bioremediation
Zhang, C. (PhD candidate), Smidt, H. (Promotor), Atashgahi, S. (Co-promotor) & Bosma, T. (Co-promotor)
1/11/16 → 5/07/23
Project: PhD
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Host-metabolite interactions in the piglet intestine and its relation to diarrhea
van der Hee, B. (PhD candidate), Wells, J. (Promotor) & Smidt, H. (Co-promotor)
1/11/16 → 28/06/23
Project: PhD
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Effect of transgenic sugarcane on diversity of associated bacterial communities
Baig, N. (PhD candidate) & Smidt, H. (Promotor)
1/07/16 → 13/12/23
Project: PhD
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Colonic and ileal carbohydrate degradation in healthy adults and elderly
An, R. (PhD candidate), Smidt, H. (Promotor) & Zoetendal, E. (Co-promotor)
15/06/16 → 10/12/20
Project: PhD
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Impact of early life diet on microbiome development and later health
van Daele, E. (PhD candidate), Knol, J. (Promotor) & Smidt, H. (Promotor)
4/04/16 → 24/05/24
Project: PhD
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Glycans in early life effect the microbiome and determine health
Kostopoulos, I. (PhD candidate), Knol, J. (Promotor) & Belzer, C. (Co-promotor)
4/04/16 → 8/01/21
Project: PhD
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Create a toolbox using Cpf1 for bacterial genome engineering
Wu, W. (PhD candidate), van der Oost, J. (Promotor) & Staals, R. (Co-promotor)
1/03/16 → 12/02/21
Project: PhD
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The host-microbiota interactome in early life and its role in gut immune development
de Vries, H. (PhD candidate), Smidt, H. (Promotor) & Wells, J. (Promotor)
1/02/16 → 14/12/22
Project: PhD
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Fermentation and cooperation by marine anaerobes
van Vliet, D. (PhD candidate), Stams, F. (Promotor) & Sanchez Andrea, I. (Co-promotor)
2/11/15 → 8/09/21
Project: PhD
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Sporulation and its significance to butanol production in C. acetobutylicum
Diallo, M. (PhD candidate), van der Oost, J. (Promotor), Kengen, S. (Co-promotor) & Lopez Contreras, A. (Co-promotor)
19/10/15 → 7/04/21
Project: PhD
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Mining the metagenome of sponge-associated microorganisms from the central coastal region of Vietnam for antimicrobial compounds
Ton, D. (PhD candidate), Sipkema, D. (Promotor) & Smidt, H. (Promotor)
5/10/15 → 13/11/23
Project: PhD