Microbiology

Search results

• Transcriptomics datasets for Clostridium autoethanogenum grown on CO in different environmental conditions

  Diender, M. (Creator), Koehorst, J. (Creator) & Machado de Sousa, D. (Creator), Wageningen University & Research, 25 Jan 2019

  DOI: 10.4121/uuid:b6bd64a9-5bdb-4655-9829-520aa4600987

  Dataset

• Data underlying the publication: ‘Effects of E. coli Nissle 1917 on the Porcine Gut Microbiota and Immune System in Early Life’

  Geervliet, M. (Creator), de Vries, H. (Creator), Jansen, C. (Creator), Rutten, V. (Creator), van Hees, H. M. J. (Creator), Wen, C. (Creator), Skovgaard, K. (Creator), Antonello, G. (Creator), Savelkoul, H. (Creator), Smidt, H. (Creator), Tijhaar, E. (Creator) & Wells, J. (Creator), Wageningen University & Research, 9 Feb 2022

  DOI: 10.4121/15060177

  Dataset

• Metabolic flexibility of a prospective bioremediator: Desulfitobacterium hafniense Y51 challenged in chemostats

  Tian, Y. (Creator) & Suarez, M. D. (Creator), Wageningen University, 21 Nov 2017

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107146

  Dataset

• The transcriptional response of bioreactor-grown Aspergillus niger cultures towards three oils

  van der Veen, D. (Creator), van den Berg, R. A. (Creator) & de Graaff, L. (Creator), Wageningen University and Research Centre, 1 Sep 2009

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14285

  Dataset

• Single-cell transcriptomes for anaerobic ciliates

  Lewis, W. (Contributor), Newcastle University, 28 May 2021

  DOI: 10.6084/m9.figshare.14695251

  Dataset

• Genome sequencing of one-carbon degrading acetogenic bacteria Moorella glycerini Strain NMP

  Liebensteiner, M. (Creator), Pinkse, M. W. H. (Creator), Nijsse, B. (Creator), Verhaert, P. D. E. M. (Creator), Tsesmetzis, N. (Creator), Stams, A. J. M. (Creator) & Lomans, B. (Creator), Wageningen University, 5 Feb 2015

  http://www.ebi.ac.uk/ena/data/view/PRJEB8377

  Dataset

• Effects of Argonaute on gene expression in Thermus thermophilus

  Swarts, D. (Creator), Koehorst, J. (Creator), Westra, E. R. (Creator), Schaap, P. (Creator) & van der Oost, J. (Creator), Wageningen University, 23 Apr 2015

  https://www.ebi.ac.uk/ena/data/view/PRJEB8709

  Dataset

• Comparative genomic and physiological analysis of Trichococcus species

  Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB12704

  Dataset

• Comparative genomic and physiological analysis of Trichococcus species

  Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB12707

  Dataset

• A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

  Martens, L. (Creator), Koehorst, J. (Creator), van Heck, R. (Creator), Suarez Diez, M. (Creator), Stams, F. (Creator) & Schaap, P. (Creator), Wageningen University & Research, 7 Jan 2021

  DOI: 10.6084/m9.figshare.13533055

  Dataset

• Genome sequencing of one-carbon degrading acetogenic bacteria Sporomusa An4

  Visser, M. (Creator), Pieterse, M. M. (Creator), Pinkse, M. W. H. (Creator), Nijsse, B. (Creator), Verhaert, P. D. E. M. (Creator), de Vos, W. (Creator) & Stams, A. J. M. (Creator), Wageningen University, 28 Feb 2015

  https://www.ebi.ac.uk/ena/data/view/PRJEB8443

  Dataset

• Effect of nickel and cobalt on methanogenic enrichment cultures and role of biogenic sulphide in metal toxicity attenuation

  da Luz Ferreira Martins Paulo, L. (Creator), Ramiro Garcia, J. (Creator), van Mourik, S. (Creator), Stams, F. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 1 May 2019

  https://www.ebi.ac.uk/ena/data/view/PRJEB20620

  Dataset

• Transcriptomic and physiological responses of Bacillus cereus to organic and inorganic acid down-shocks

  Mols, J. M. (Creator), van Kranenburg, R. (Creator), Tempelaars, M. (Creator), van Schaik, W. (Creator), Moezelaar, R. (Creator) & Abee, T. (Creator), Wageningen University, 30 Sep 2009

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15140

  Dataset

• Archaeal diversity in sediment slurries degrading butyrate or propionate derived from Aarhus Bay

  Ozuolmez, D. (Creator), Stams, F. (Creator) & Plugge, C. (Creator), Wageningen University, 29 Feb 2020

  https://www.ebi.ac.uk/ena/data/view/PRJEB36882

  Dataset

• Microbiota development in preterm and term infants

  Korpela, K. (Creator), Blakstad, E. W. (Creator), Moltu, S. J. (Creator), Strømmen, K. (Creator), Nakstad, B. (Creator), Rønnestad, A. E. (Creator), Brække, K. (Creator), Iversen, P. O. (Creator), Drevon, C. A. (Creator) & de Vos, W. (Creator), Wageningen University, 31 May 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB26802

  Dataset

• CRISPR Cas3 Plasmid degradation assays

  Kunne, T. A. (Creator), Kieper, S. (Creator), Bannenberg, J. (Creator), Vogel, A. I. M. (Creator), Miellet, W. (Creator), Klein, M. (Creator), Depken, M. (Creator), Suarez Diez, M. (Creator) & Brouns, S. J. J. (Creator), Wageningen University, 16 Aug 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB13999

  Dataset

• The sigmaB regulon of B. cereus ATCC14579

  van Schaik, W. (Creator), van der Voort, M. (Creator), de Vos, W. (Creator) & Abee, T. (Creator), Wageningen UR, 10 Apr 2007

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6005

  Dataset

• Long-chain fatty acids degradation by Desulfomonile species, proposal of “Candidatus Desulfomonile palmitatoxidans” and emended description of the genus Desulfomonile

  Alves, J. I. (Creator), Salvador, A. F. (Creator), Castro, A. R. (Creator), Zheng, Y. (Creator), Nijsse, B. (Creator), Atashgahi, S. (Creator), Machado de Sousa, D. (Creator), Stams, F. (Creator), Alves, M. M. (Creator) & Cavaleiro, A. J. (Creator), Wageningen University, 17 Feb 2020

  https://www.ebi.ac.uk/ena/browser/view/PRJEB35900

  Dataset

• A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants

  Lay, C. (Creator), Chu, C. W. (Creator), Purbojati, R. W. (Creator), Acerbi, E. (Creator), Drautz-Moses, D. I. (Creator), de Sessions, P. F. (Creator), Jie, S. (Creator), Ho, E. (Creator), Kok, Y. J. (Creator), Bi, X. (Creator), Chen, S. (Creator), Mak, S. Y. (Creator), Chua, M. C. (Creator), Goh, A. E. N. (Creator), Chiang, W. C. (Creator), Rao, R. (Creator), Chaithongwongwatthana, S. (Creator), Khemapech, N. (Creator), Chongsrisawat, V. (Creator), Martin, R. (Creator), Koh, Y. (Creator), Lohar, S. R. (Creator), Tan, I. C. H. (Creator), Anng, W. A. (Creator), Jie, C. (Creator), Bartke, N. (Creator), Ben-Amor, K. (Creator), Renes, I. B. (Creator), Wong, F. (Creator), Roeselers, G. (Creator), Ho, Y. S. (Creator), Hibberd, M. L. (Creator), Schuster, S. C. (Creator) & Knol, J. (Creator), 28 Oct 2021

  https://www.ebi.ac.uk/ena/browser/view/PRJEB44790

  Dataset

• Effects of CO2 limitation on the metabolism of Pseudoclostridium thermosuccinogenes

  Koendjbiharie, J. G. (Creator), Post, W. B. (Creator), Palmer, M. M. (Creator) & van Kranenburg, R. (Creator), Wageningen University & Research, 9 Jun 2020

  DOI: 10.6084/m9.figshare.c.5013455

  Dataset

• T. patagoniensis in freezing temperature

  Strepis, N. (Creator), Wageningen University & Research, 5 Oct 2018

  DOI: 10.18174/461382, https://edepot.wur.nl/461382

  Dataset

• T. pasteurii comparison with proteomics with C. butyricum

  Strepis, N. (Creator), Wageningen University & Research, 5 Oct 2018

  DOI: 10.18174/461383, https://edepot.wur.nl/461383

  Dataset

• Genome sequencing and description of Lucifera butyrica gen. nov. sp. nov., an novel glycerol fermenter and sulfur respirer isolated from acid rock drainage

  Sanchez Andrea, I. (Creator), Florentino de Souza Silva, A. (Creator), Semerel, J. (Creator), Strepis, N. (Creator), Machado de Sousa, D. (Creator) & Stams, F. (Creator), Wageningen University, 29 Sep 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB13757

  Dataset

• Mucosal responses of healthy humans to three different probiotic Lactobacillus bacteria

  van Baarlen, P. (Creator), Kleerebezem, M. (Creator), Brummer, R. M. (Creator), van der Meer, C. (Creator), Hooiveld, G. (Creator), Troost, F. J. (Creator) & Boekschoten, M. (Creator), Wageningen University, 8 Sep 2010

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE18741

  Dataset

• Ethanol stress response in Lactobacillus plantarum WCFS1

  van Bokhorst-van de Veen, H. (Creator), Rojo-Bezares, B. (Creator), Bongers, R. S. (Creator), Tempelaars, M. (Creator), Molenaar, D. (Creator), Marco, M. (Creator), Abee, T. (Creator) & Kleerebezem, M. (Creator), NIZO, 1 Jan 2010

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE17847

  Dataset