Datasets
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Transcriptomics datasets for Clostridium autoethanogenum grown on CO in different environmental conditions
Diender, M. (Creator), Koehorst, J. (Creator) & Machado de Sousa, D. (Creator), Wageningen University & Research, 25 Jan 2019
DOI: 10.4121/uuid:b6bd64a9-5bdb-4655-9829-520aa4600987
Dataset
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Data underlying the publication: ‘Effects of E. coli Nissle 1917 on the Porcine Gut Microbiota and Immune System in Early Life’
Geervliet, M. (Creator), de Vries, H. (Creator), Jansen, C. (Creator), Rutten, V. (Creator), van Hees, H. M. J. (Creator), Wen, C. (Creator), Skovgaard, K. (Creator), Antonello, G. (Creator), Savelkoul, H. (Creator), Smidt, H. (Creator), Tijhaar, E. (Creator) & Wells, J. (Creator), Wageningen University & Research, 9 Feb 2022
DOI: 10.4121/15060177
Dataset
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Giardia intestinalis Raw sequence reads
Onsbring, H. (Creator), Tice, A. K. (Creator), Barton, B. T. (Creator), Brown, M. W. (Creator) & Ettema, T. (Creator), 1 Jun 2019
https://www.ncbi.nlm.nih.gov/bioproject/?term=prjna545787
Dataset
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Gutleben_et.al_Halogenases_Aplysinas
Gutleben, J. (Creator), Wageningen University & Research, 2019
https://github.com/mibwurrepo/Gutleben_et.al_Halogenases_Aplysinas
Dataset
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Effects of seasonality and previous logging on wild lemur gastrointestinal microbial composition, nematode infections and their interactions
Umanetc, A. (Creator), Wageningen University, 4 Jan 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB20227
Dataset
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RNA-seq of a degenerated spoIIE deficient Clostridium beijerinckii NCIMB 8052 at 4, 11 and 24 hours of fermentation
Diallo, M. (Creator), Wageningen Food & Biobased Research, 30 Jun 2020
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-9201/
Dataset
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Determination of variability of fermentor-grown Aspergillus niger
van der Veen, D. (Creator), Pimenta Ferreira De Oliveira, J. (Creator), van den Berg, W. (Creator) & de Graaff, L. (Creator), Wageningen University and Research Centre, 31 Dec 2008
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11405
Dataset
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Campylobacter jejuni Cas9 is necessary for efficient infection of Caco-2 cells and cell stress induction
van Baarlen, P. (Creator), Louwen, R. (Creator) & van der Oost, J. (Creator), Wageningen University, 30 Sept 2018
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE89661
Dataset
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Development of the intestinal microbiota in preterm infants during the first six postnatal weeks determined by 454 pyrosequencing of the 16S rRNA gene
Zwittink, R. D. (Creator), van Zoeren-Grobben, D. (Creator), Martin, R. (Creator), van Lingen, R. A. (Creator), Groot Jebbink, L. J. (Creator), Boeren, S. (Creator), Renes, I. B. (Creator), Van Elburg, R. M. (Creator), Belzer, C. (Creator) & Knol, J. (Creator), Wageningen University, 9 Mar 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB18915
Dataset
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Propionate converting anaerobic microbial communities enriched from distinct biogeochemical zones of Aarhus Bay, Denmark under sulfidogenic and methanogenic conditions
Ozuolmez, D. (Creator), Stams, F. (Creator) & Plugge, C. (Creator), Wageningen University, 14 Apr 2020
https://www.ebi.ac.uk/ena/data/view/PRJEB36640
Dataset
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Childhood BMI in relation to microbiota in infancy and lifetime antibiotic use
Korpela, K. (Creator), Zijlmans, M. A. C. (Creator), Kuitunen, M. (Creator), Kukkonen, K. (Creator), Savilahti, E. (Creator), Salonen, A. (Creator), de Weerth, C. (Creator) & de Vos, W. (Creator), University of Helsinki, 3 Mar 2017
DOI: 10.6084/m9.figshare.c.3708112
Dataset
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Supplementary material: Transcriptome analysis of fucoidan and L-fucose degradation by Pontiella desulfatans F1(T)
van Vliet, D. (Creator), Wageningen University & Research, 15 Dec 2020
DOI: 10.4121/13317587
Dataset
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Human fecal samples microbial 16S rRNA gene sequence
van Dongen, K. (Creator), van der Zande, M. (Creator), Bruyneel, B. (Creator), Vervoort, J. (Creator), Rietjens, I. (Creator), Belzer, C. (Creator) & Beekmann, K. (Creator), Wageningen University, 1 Mar 2021
https://www.ebi.ac.uk/ena/browser/view/PRJEB39539
Dataset
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Complete genome sequence of the Akkermansia glycaniphila strain PytT a mucin-degrading specialist of the reticulated python gut
Ouwerkerk, J. P. (Creator), Koehorst, J. (Creator), Schaap, P. (Creator), Ritari, J. (Creator), Paulin, L. (Creator), Belzer, C. (Creator) & de Vos, W. (Creator), Wageningen University, 2 Sept 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB15121
Dataset
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A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration
Martens, L. (Creator), Koehorst, J. (Creator), van Heck, R. (Creator), Suarez Diez, M. (Creator), Stams, F. (Creator) & Schaap, P. (Creator), Wageningen University & Research, 7 Jan 2021
DOI: 10.6084/m9.figshare.13533055
Dataset
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Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
Strepis, N. (Creator), Naranjo, H. D. (Creator), Meier-Kolthoff, J. P. (Creator), Göker, M. (Creator), Shapiro, N. (Creator), Kyrpides, N. C. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, F. (Creator) & Machado de Sousa, D. (Creator), Wageningen University & Research, 9 Jan 2020
DOI: 10.6084/m9.figshare.c.4810569
Dataset
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Metabolic engineering of Clostridium autoethanogenum for ethyl acetate production from CO
Dykstra, J. (Creator), van Oort, J. (Creator), Yazdi, A. T. (Creator), Vossen, E. (Creator), Patinios, C. (Creator), van der Oost, J. (Creator), Machado de Sousa, D. (Creator) & Kengen, S. (Creator), Wageningen University, 25 Nov 2022
DOI: 10.6084/m9.figshare.c.6317418
Dataset
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Genome sequencing of one-carbon degrading acetogenic bacteria Moorella glycerini Strain NMP
Liebensteiner, M. (Creator), Pinkse, M. W. H. (Creator), Nijsse, B. (Creator), Verhaert, P. D. E. M. (Creator), Tsesmetzis, N. (Creator), Stams, A. J. M. (Creator) & Lomans, B. P. (Creator), Wageningen University, 5 Feb 2015
http://www.ebi.ac.uk/ena/data/view/PRJEB8377
Dataset
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Desulfurella amilsii strain:TR1 Genome sequencing and assembly
Florentino de Souza Silva, A. (Creator), Stams, F. (Creator) & Sanchez Andrea, I. (Creator), Wageningen University & Research, 1 May 2017
https://www.ncbi.nlm.nih.gov/bioproject/336485
Dataset
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Comparative genomic and physiological analysis of Trichococcus species
Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB12709
Dataset
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Comparative genomic and physiological analysis of Trichococcus species
Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB12706
Dataset
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Comparative genomic and physiological analysis of Trichococcus species
Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB12707
Dataset
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Characterization of bacterial and archeal communities associated to dietary adaptations of grass and maize silage based diets
Vaidya, J. (Creator), van Gastelen, S. (Creator), Smidt, H. (Creator), Plugge, C. (Creator) & Edwards, J. (Creator), Wageningen University, 11 Mar 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB24373
Dataset
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Microbial community response of an organohalide respiring enrichment culture to permanganate oxidation
Sutton, N. (Creator), Atashgahi, S. (Creator), Saccenti, E. (Creator), Grotenhuis, T. (Creator), Smidt, H. (Creator) & Rijnaarts, H. (Creator), Wageningen University, 29 May 2015
https://www.ebi.ac.uk/ena/data/view/PRJEB8632
Dataset
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Genome sequence of organohalide-respiring Desulfoluna spongiiphila DBB and Desulfoluna butyratoxydans MSL71T
Peng, P. (Creator), Goris, T. (Creator), Lu, Y. (Creator), Nijsse, B. (Creator), Burrichter, A. (Creator), Schleheck, D. (Creator), Koehorst, J. (Creator), Liu, J. (Creator), Sipkema, D. (Creator), Sinninghe Damste, J. S. (Creator), Stams, F. (Creator), Häggblom, M. M. (Creator), Smidt, H. (Creator) & Atashgahi, S. (Creator), Wageningen University, 15 May 2019
https://www.ebi.ac.uk/ena/data/view/PRJEB31368
Dataset