Microbiology

Search results

• Transcriptomics datasets for Clostridium autoethanogenum grown on CO in different environmental conditions

  Diender, M. (Creator), Koehorst, J. (Creator) & Machado de Sousa, D. (Creator), Wageningen University & Research, 25 Jan 2019

  DOI: 10.4121/uuid:b6bd64a9-5bdb-4655-9829-520aa4600987

  Dataset

• Data underlying the publication: ‘Effects of E. coli Nissle 1917 on the Porcine Gut Microbiota and Immune System in Early Life’

  Geervliet, M. (Creator), de Vries, H. (Creator), Jansen, C. (Creator), Rutten, V. (Creator), van Hees, H. M. J. (Creator), Wen, C. (Creator), Skovgaard, K. (Creator), Antonello, G. (Creator), Savelkoul, H. (Creator), Smidt, H. (Creator), Tijhaar, E. (Creator) & Wells, J. (Creator), Wageningen University & Research, 9 Feb 2022

  DOI: 10.4121/15060177

  Dataset

• The transcriptional response of bioreactor-grown Aspergillus niger cultures towards three oils

  van der Veen, D. (Creator), van den Berg, R. A. (Creator) & de Graaff, L. (Creator), Wageningen University and Research Centre, 1 Sept 2009

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14285

  Dataset

• T. patagoniensis in freezing temperature

  Strepis, N. (Creator), Wageningen University & Research, 5 Oct 2018

  DOI: 10.18174/461382, https://edepot.wur.nl/461382

  Dataset

• Transcription profiling of Aspergillus niger grown in media containg different pectic substrates to study the pectinolytic system

  Martens-Uzunova, E. S. (Creator), Wageningen UR, 13 Jun 2008

  https://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-1626/

  Dataset

• cellular organisms 16S ribosomal RNA gene, partial sequence

  Pereira, M. A. (Creator), Roest, C. (Creator), Stams, A. J. M. (Creator), Alves, M. M. (Creator) & Akkermans, A. D. L. (Creator), Wageningen University & Research, 5 May 2004

  https://www.ncbi.nlm.nih.gov/popset/22532112

  Dataset

• Guam Sponge Microbial OTU abundance & Taxonomy (Greengenes)

  Steinert, G. (Creator), Taylor, M. W. (Creator), Deines, P. (Creator), Simister, R. L. (Creator), De Voogd, N. J. (Creator), Hoggard, M. (Creator) & Schupp, P. J. (Creator), Wageningen University & Research, 13 Jan 2016

  DOI: 10.6084/m9.figshare.2063280

  Dataset

• BLAST results most abundant 97% OTUs

  Steinert, G. (Creator), Taylor, M. W. (Creator), Deines, P. (Creator), Simister, R. L. (Creator), De Voogd, N. J. (Creator), Hoggard, M. (Creator) & Schupp, P. J. (Creator), Wageningen University & Research, 2017

  DOI: 10.6084/m9.figshare.2366827

  Dataset

• Siloxanes degradation

  Pascual, C. (Creator), Cantera, S. (Creator), Muñoz, R. (Creator) & Lebrero, R. (Creator), Wageningen University & Research, 2 Mar 2020

  https://www.ncbi.nlm.nih.gov/bioproject/609718

  Dataset

• Isolation of a novel anaerobic acidophilic sulfate-reducing bacterium, Acididesulfobacillus acetoxydans str. INE

  Sanchez Andrea, I. (Creator), van der Graaf, L. (Creator), Hornung, B. (Creator), Jarzembowska, M. (Creator) & Stams, F. (Creator), Wageningen University and Research Centre, 19 Feb 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB7665

  Dataset

• Siloxanes biodegradation

  Pascual, C. (Creator), Cantera Ruiz de Pellon, S. (Creator) & Lebrero, R. (Creator), Wageningen University and Research Centre, 30 Mar 2021

  https://www.ebi.ac.uk/ena/browser/view/PRJNA717278

  Dataset

• CowPI: A Rumen Microbiome Focussed Version of the PICRUSt Functional Inference Software

  Wilkinson, T. J. (Creator), Huws, S. A. (Creator), Edwards, J. E. (Creator), Kingston-Smith, A. H. (Creator), Siu-Ting, K. (Creator), Hughes, M. (Creator), Rubino, F. (Creator), Friedersdorff, M. (Creator) & Creevey, C. J. (Creator), Aberystwyth University, 25 May 2018

  DOI: 10.5281/zenodo.1252857

  Dataset

• Dual bioaugmentation with Desulfitobacterium hafniense Y51 and redox-trained fermenting communities for decontamination of PCE polluted river sediment: a microcosm study

  Tian, Y. (Creator) & Vargas-López, R. (Creator), Wageningen University, 11 Jun 2018

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE115548

  Dataset

• Growth and activity of ANME clades with different sulfate and sulfide concentrations in presence of methane

  Timmers, P. H. A. (Creator), Widjaja-Greefkes, H. C. A. (Creator), Ramiro Garcia, J. (Creator), Plugge, C. (Creator) & Stams, A. J. M. (Creator), Wageningen University, 31 Aug 2015

  https://www.ebi.ac.uk/ena/data/view/PRJEB10324

  Dataset

• Organic acids production from starch waste by rumen microorganisms

  Palakawong Na Ayudthaya, S. (Creator), Hornung, B. V. H. (Creator), Ravikumar Varadarajan, A. (Creator), Plugge, W. (Creator) & Plugge, C. (Creator), Wageningen University, 21 Dec 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB6322

  Dataset

• Streptococcus sp. genome sequencing

  Palakawong Na Ayudthaya, S. (Creator), Marshall, I. P. G. (Creator), Schreiber, L. (Creator) & Plugge, C. (Creator), Wageningen University, 19 Apr 2017

  http://www.ebi.ac.uk/ena/data/view/PRJNA352333

  Dataset

• Halomonas_CO2

  Cantera, S. (Creator), Machado de Sousa, D. (Creator) & Sánchez-Andrea, I. (Creator), Wageningen University & Research, 5 Jan 2021

  https://www.ncbi.nlm.nih.gov/bioproject/689702

  Dataset

• Childhood BMI in relation to microbiota in infancy and lifetime antibiotic use

  Korpela, K. (Creator), Zijlmans, M. A. C. (Creator), Kuitunen, M. (Creator), Kukkonen, K. (Creator), Savilahti, E. (Creator), Salonen, A. (Creator), de Weerth, C. (Creator) & de Vos, W. (Creator), University of Helsinki, 3 Mar 2017

  DOI: 10.6084/m9.figshare.c.3708112

  Dataset

• Genome sequencing of one-carbon degrading acetogenic bacteria Sporomusa An4

  Visser, M. (Creator), Pieterse, M. M. (Creator), Pinkse, M. W. H. (Creator), Nijsse, B. (Creator), Verhaert, P. D. E. M. (Creator), de Vos, W. (Creator) & Stams, A. J. M. (Creator), Wageningen University, 28 Feb 2015

  https://www.ebi.ac.uk/ena/data/view/PRJEB8443

  Dataset

• Listeria monocytogenes SOS response determined after mitomycin C exposure

  van der Veen, S. (Creator), van Schalkwijk, S. (Creator), Molenaar, D. (Creator), de Vos, W. (Creator), Abee, T. (Creator) & Wells-Bennik, M. H. J. (Creator), Wageningen University, 25 Nov 2009

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12634

  Dataset

• Gut microbiota structure in the course of pediatric allo-HSCT

  Bekker, V. (Creator), Zwittink, R. (Creator), Knetsch, C. W. (Creator), Sanders, I. M. J. G. (Creator), Berghuis, D. (Creator), Heidt, P. J. (Creator), Vossen, J. M. J. J. (Creator), de Vos, W. (Creator), Belzer, C. (Creator), Bredius, R. G. M. (Creator), van‘t Hof, P. J. (Creator), Lankester, A. C. (Creator) & Kuijper, E. J. (Creator), Leiden University Medical Centre, 12 Nov 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB28845

  Dataset

• Data from: Gut microbiota signatures predict host and microbiota responses to dietary interventions in obese individuals

  Korpela, K. (Creator), Flint, H. J. (Creator), Johnstone, A. M. (Creator), Lappi, J. (Creator), Poutanen, K. (Creator), Dewulf, E. (Creator), Delzenne, N. (Creator), de Vos, W. (Creator) & Salonen, A. (Creator), University of Helsinki, 3 Feb 2015

  DOI: 10.5061/dryad.bv4k7

  Dataset

• Lifelong calorie restriction and markers of colonic health in aging mice

  Kok, D. (Creator), Rusli, F. (Creator), van der Lugt, B. M. (Creator), Lute, C. (Creator), Laghi, L. (Creator), Salvioli, S. (Creator), Picone, G. (Creator), Franceschi, C. (Creator), Smidt, H. (Creator), Vervoort, J. J. M. (Creator), Kampman, E. (Creator), Müller, M. (Creator) & Steegenga, W. T. (Creator), Wageningen University, 27 Mar 2018

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100701

  Dataset

• Assessment of the Accuracy of Anaerobic Fungal ITS1 Based Barcoded Amplicon Sequencing for Community Composition Analysis

  Edwards, J. (Creator), Hermes, G. (Creator), Kittelmann, S. (Creator), Nijsse, B. (Creator) & Smidt, H. (Creator), Wageningen University, 9 Dec 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB29131

  Dataset

• Dechlorination of three tetrachlorobenzene isomers by enrichment cultures originating from a contaminated harbor follows thermodynamically favorable reactions

  Lu, Y. (Creator), Ramiro Garcia, J. (Creator), Vandermeeren, P. (Creator), Herrmann, S. (Creator), Cichocka, D. (Creator), Springael, D. (Creator), Atashgahi, S. (Creator) & Smidt, H. (Creator), Wageningen University & Research, 1 Sept 2016

  https://www.ebi.ac.uk/ena/browser/view/PRJEB13024

  Dataset