Microbiology

Search results

• Transcriptomics datasets for Clostridium autoethanogenum grown on CO in different environmental conditions

  Diender, M. (Creator), Koehorst, J. (Creator) & Machado de Sousa, D. (Creator), Wageningen University & Research, 25 Jan 2019

  DOI: 10.4121/uuid:b6bd64a9-5bdb-4655-9829-520aa4600987

  Dataset

• Cultured bacterial diversity of sponges still largely unexplored: a cultivation study of three Mediterranean sponges

  Versluis, D. (Creator), Mcpherson, K. R. (Creator), van Passel, M. W. J. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University, 22 Apr 2015

  https://www.ebi.ac.uk/ena/data/view/PRJEB8621

  Dataset

• The Core Equine Faecal Microbiome: A Broader Perspective

  Edwards, J. (Creator), Shetty, S. (Creator), van den Berg, P. (Creator), Burden, F. (Creator), van Doorn, D. A. (Creator), Pellikaan, W. (Creator), Dijkstra, J. (Creator) & Smidt, H. (Creator), Wageningen University, 20 Apr 2019

  https://www.ebi.ac.uk/ena/data/view/PRJEB31377

  Dataset

• Supplementary material: Sulfidogenic bacteria enriched from deep anoxic Black Sea sediment and the description of Desulfopila canfieldii sp. nov.

  van Vliet, D. (Creator) & Bale, N. J. (Creator), Wageningen University & Research, 15 Dec 2020

  DOI: 10.4121/13317545

  Dataset

• Differences exist in the faecal microbiota of domesticated equines

  Edwards, J. (Creator), Schennink, A. (Creator), Burden, F. (Creator), Long, S. (Creator), van Doorn, D. A. (Creator), Pellikaan, W. (Creator), Dijkstra, J. (Creator), Saccenti, E. (Creator) & Smidt, H. (Creator), Wageningen University, 6 Jan 2020

  https://www.ebi.ac.uk/ena/data/view/PRJEB32772

  Dataset

• Gender and strain dependent differences in intestinal immunology correlate with differences in microbiota composition (colon)

  Elderman, M. (Creator), Hugenholtz, F. (Creator), Belzer, C. (Creator), Boekschoten, M. (Creator), van Beek, A. A. (Creator), de Haan, B. J. (Creator), Savelkoul, H. (Creator), de Vos, P. (Creator) & Faas, M. M. (Creator), Wageningen University, 27 Jun 2018

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE85911

  Dataset

• Genome sequence of the rat gut bacterium Romboutsia ilealis CRIB

  Gerritsen, J. (Creator), Timmerman, H. M. (Creator), Fuentes, S. (Creator), van Minnen, L. P. (Creator), Panneman, H. (Creator), Konstantinov, S. R. (Creator), Rombouts, F. M. (Creator), Gooszen, H. G. (Creator), Akkermans, L. M. A. (Creator), Smidt, H. (Creator) & Rijkers, G. T. (Creator), Wageningen University, 31 Mar 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB4727

  Dataset

• Paired Omics Data Platform

  Verhoeven, S. (Creator), Schorn, M. (Creator), Willighagen, E. L. (Creator) & van der Hooft, J. (Creator), 1 May 2019

  DOI: 10.5281/zenodo.2656630

  Dataset

• Data and analysis of diet-induced and obesity-associated alterations of gut microbiota of 129S6/Sv and C57BL/6J mice

  Xiao, L. (Creator), Sonne, S. B. (Creator), Feng, Q. (Creator), Chen, N. (Creator), Xia, Z. (Creator), Li, X. (Creator), Fang, Z. (Creator), Fjære, E. (Creator), Derrien, M. M. N. (Creator), Hugenholtz, F. (Creator) & Kleerebezem, M. (Creator), 25 Jan 2017

  DOI: 10.5524/100271, https://www.ebi.ac.uk/ena/data/view/PRJEB10308

  Dataset

• Listeria monocytogenes SOS response determined after mitomycin C exposure

  van der Veen, S. (Creator), van Schalkwijk, S. (Creator), Molenaar, D. (Creator), de Vos, W. (Creator), Abee, T. (Creator) & Wells-Bennik, M. H. J. (Creator), Wageningen University, 25 Nov 2009

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12634

  Dataset

• Sequencing the bacterial metatranscriptome associated with the marine sponge Crambe crambe

  Versluis, D. (Creator), D'Andrea, M. M. (Creator), Ramiro Garcia, J. (Creator), Leimena, M. M. (Creator), Hugenholtz, F. (Creator), Zhang, J. (Creator), Ozturk, B. (Creator), Nylund, L. (Creator), Sipkema, D. (Creator), van Schaik, W. (Creator), de Vos, W. (Creator), Kleerebezem, M. (Creator), Smidt, H. (Creator) & van Passel, M. W. J. (Creator), Wageningen University, 7 Dec 2015

  https://www.ebi.ac.uk/ena/data/view/PRJEB7474

  Dataset

• Genome sequencing of one-carbon degrading acetogenic bacteria Sporomusa An4

  Visser, M. (Creator), Pieterse, M. M. (Creator), Pinkse, M. W. H. (Creator), Nijsse, B. (Creator), Verhaert, P. D. E. M. (Creator), de Vos, W. (Creator) & Stams, F. (Creator), Wageningen University, 28 Feb 2015

  https://www.ebi.ac.uk/ena/data/view/PRJEB8443

  Dataset

• Metabolic flexibility of a prospective bioremediator: Desulfitobacterium hafniense Y51 challenged in chemostats

  Tian, Y. (Creator) & Suarez, M. D. (Creator), Wageningen University, 21 Nov 2017

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107146

  Dataset

• Comparative genomics, symbiotic capacities and high metabolic flexibility of the marine genus Pseudovibrio

  Versluis, D. (Creator), Nijsse, B. (Creator), Mohamad, M. A. N. (Creator), Koehorst, J. (Creator), Wiese, J. (Creator), Imhoff, J. F. (Creator), Schaap, P. (Creator), van Passel, M. W. J. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University, 28 Jun 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB20602

  Dataset

• Benzene reactor liquid, biofilm sampling

  van der Waals, M. (Creator), Atashgahi, S. (Creator), da Rocha, U. N. (Creator), van der Zaan, B. M. (Creator), Smidt, H. (Creator) & Gerritse, J. (Creator), Wageningen University, 21 Mar 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB18709

  Dataset

• Area of habitation strongly influences faecal microbial composition of wild lemurs

  Umanetc, A. (Creator), de Winter, I. (Creator), IJdema, F. (Creator), Ramiro Garcia, J. (Creator), van Hooft, P. (Creator), Heitkonig, I. (Creator), Prins, H. (Creator) & Smidt, H. (Creator), Wageningen University, 31 May 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB20007

  Dataset

• High throughput cultivation-based screening on the MicroDish platform allows targeted isolation of antibiotic resistant human gut bacteria

  Versluis, D. (Creator), Bello Gonzalez, T. (Creator), Zoetendal, E. (Creator), van Passel, M. (Creator) & Smidt, H. (Creator), Wageningen University, 9 Jan 2019

  https://www.ebi.ac.uk/ena/data/view/PRJEB27463

  Dataset

• Biodegradation of cis-Dichloroethene and Vinyl Chloride at Oxic/anoxic Interface of Freshwater Sediment Under Redox Fluctuations

  Atashgahi, S. (Creator), Lu, Y. (Creator), Ramiro Garcia, J. (Creator), Peng, P. (Creator), Maphosa, F. (Creator), Sipkema, D. (Creator), Dejonghe, W. (Creator), Smidt, H. (Creator) & Springael, D. (Creator), Wageningen University & Research, 30 Mar 2017

  https://www.ebi.ac.uk/ena/browser/view/PRJEB14318

  Dataset

• RNA-targeting by the Type III-A CRISPR-Cas complex of Thermus thermophilus

  Staals, R. (Creator), Zhu, Y. (Creator), Taylor, D. W. (Creator), Kornfeld, J. E. (Creator), Sharma, K. (Creator), Barendregt, A. (Creator), Koehorst, J. (Creator), Vlot, M. (Creator), Neupane, N. (Creator), Varossieau, K. (Creator), Sakamoto, K. (Creator), Suzuki, T. (Creator), Schaap, P. (Creator), Urlaub, H. (Creator), Heck, A. J. R. (Creator), Nogales, E. (Creator), Doudna, J. A. (Creator), Shinkai, A. (Creator) & van der Oost, J. (Creator), Wageningen University, 9 Oct 2014

  http://www.ebi.ac.uk/ena/data/view/PRJEB7461

  Dataset

• Uncultured bacterium expoxyalkane:coenzyme transferase gene, partial cds

  Atashgahi, S. (Creator), Lu, Y. (Creator), Ramiro Garcia, J. (Creator), Peng, P. (Creator), Maphosa, F. (Creator), Sipkema, D. (Creator), Dejonghe, W. (Creator), Smidt, H. (Creator) & Springael, D. (Creator), Wageningen University & Research, 23 Jan 2017

  https://www.ncbi.nlm.nih.gov/popset/?term=1132402361

  Dataset

• Effects of seasonality and previous logging on wild lemur gastrointestinal microbial composition, nematode infections and their interactions

  Umanetc, A. (Creator), Wageningen University, 4 Jan 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB20227

  Dataset

• Genome sequence of Romboutsia str. Frifi

  Gerritsen, J. (Creator), Umanetc, A. (Creator), van Leeuwen-Staneva, I. N. (Creator), Hornung, B. V. H. (Creator), Ritari, J. (Creator), Paulin, L. (Creator), Rijkers, G. T. (Creator), de Vos, W. (Creator) & Smidt, H. (Creator), Wageningen University, 17 Mar 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB7106

  Dataset

• Do apes smell like humans? The role of skin bacteria and volatiles of primates in mosquito host selection

  Verhulst, N. (Creator), Umanetc, A. (Creator), Weldegergis, B. (Creator), Maas, J. P. A. (Creator), Visser, T. (Creator), Dicke, M. (Creator), Smidt, H. (Creator) & Takken, W. (Creator), Wageningen University, 8 Nov 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB28608

  Dataset

• Effects of Gut Microbiota Manipulation by Antibiotics on Host Metabolism in Obese Humans: a Randomized Double-blind Placebo-controlled Trial

  Reijnders, D. (Creator), Goossens, G. H. (Creator), Neis, E. P. J. G. (Creator), van der Beek, C. M. (Creator), Most, J. (Creator), Holst, J. J. (Creator), Lenaerts, K. (Creator), Kootte, R. S. (Creator), Nieuwdorp, M. (Creator), Groen, A. K. (Creator), Boekschoten, M. (Creator), Hermes, G. (Creator), Smidt, H. (Creator), Zoetendal, E. (Creator), Dejong, C. H. C. (Creator) & Blaak, E. E. (Creator), Wageningen University, 15 Jul 2016

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76003

  Dataset

• Impact of a wastewater treatment plant on microbial community composition and function in a hyporheic zone of a eutrophic river

  Atashgahi, S. (Creator), Aydin, R. (Creator), Rocha Dimitrov, M. (Creator), Sipkema, D. (Creator), Hamonts, K. (Creator), Lahti, L. (Creator), Maphosa, F. (Creator), Kruse, T. (Creator), Saccenti, E. (Creator), Springael, D. (Creator), Dejonghe, W. (Creator) & Smidt, H. (Creator), Wageningen University, 29 Oct 2015

  https://www.ebi.ac.uk/ena/data/view/PRJEB8703

  Dataset