Datasets
Transcriptomics datasets for Clostridium autoethanogenum grown on CO in different environmental conditions
Diender, M. (Creator), Koehorst, J. (Creator), Machado de Sousa, D. (Creator), Wageningen University & Research, 25 Jan 2019
DOI: 10.4121/uuid:b6bd64a9-5bdb-4655-9829-520aa4600987
Dataset
MOLECULAR-CELL-D-16-01367 Swarts et al
Swarts, D. (Creator), Wageningen University & Research, 7 Mar 2017
Dataset
Listeria monocytogenes SOS response determined after mitomycin C exposure
van der Veen, S. (Creator), van Schalkwijk, S. (Creator), Molenaar, D. (Creator), de Vos, W. (Creator), Abee, T. (Creator), Wells-Bennik, M. H. J. (Creator), Wageningen University, 25 Nov 2009
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12634
Dataset
Assessment of CcpA-mediated catabolite control of metabolism and enterotoxin production in Bacillus cereus ATCC 14579
van der Voort, M. (Creator), Kuipers, O. P. (Creator), Buist, G. (Creator), de Vos, W. (Creator), Abee, T. (Creator), Wageningen UR, 28 Mar 2008
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7843
Dataset
Determination of variability of fermentor-grown Aspergillus niger
van der Veen, D. (Creator), Pimenta Ferreira De Oliveira, J. (Creator), van den Berg, W. (Creator), de Graaff, L. (Creator), Wageningen University and Research Centre, 31 Dec 2008
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11405
Dataset
Organic acids production from starch waste by rumen microorganisms
Palakawong Na Ayudthaya, S. (Creator), Hornung, B. V. H. (Creator), Ravikumar Varadarajan, A. (Creator), Plugge, W. (Creator), Plugge, C. (Creator), Wageningen University, 21 Dec 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB6322
Dataset
Gender and strain dependent differences in intestinal immunology correlate with differences in microbiota composition (colon)
Elderman, M. (Creator), Hugenholtz, F. (Creator), Belzer, C. (Creator), Boekschoten, M. (Creator), van Beek, A. A. (Creator), de Haan, B. J. (Creator), Savelkoul, H. (Creator), de Vos, P. (Creator), Faas, M. M. (Creator), Wageningen University, 27 Jun 2018
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE85911
Dataset
Transcriptomic and physiological responses of Bacillus cereus to organic and inorganic acid down-shocks
Mols, J. M. (Creator), van Kranenburg, R. (Creator), Tempelaars, M. (Creator), van Schaik, W. (Creator), Moezelaar, R. (Creator), Abee, T. (Creator), Wageningen University, 30 Sep 2009
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15140
Dataset
Genome assembly of a novel psychrotolerance bacterium, Trichococcus ART1 .
Parshina, S. (Creator), Strepis, N. (Creator), Aalvink, S. (Creator), Nozhevnikova, A. N. (Creator), Stams, F. (Creator), Machado de Sousa, D. (Creator), Wageningen University, 13 Jun 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB26366
Dataset
Aging-induced decline in mucus thickness in mice is associated with changes in microbiota composition and immunity and is sex dependent
Elderman, M. (Creator), Sovran, B. (Creator), Hugenholtz, F. (Creator), Graversen, K. (Creator), Huijskes, M. (Creator), Houtsma, E. (Creator), Belzer, C. (Creator), Boekschoten, M. (Creator), de Vos, P. (Creator), Dekker, J. (Creator), Wells, J. (Creator), Faas, M. M. (Creator), Wageningen University, 28 Aug 2017
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE94515
Dataset
Guam Sponge Microbial OTU abundance & Taxonomy (Greengenes)
Steinert, G. (Creator), Taylor, M. W. (Creator), Deines, P. (Creator), Simister, R. L. (Creator), De Voogd, N. J. (Creator), Hoggard, M. (Creator), Schupp, P. J. (Creator), Wageningen University & Research, 2016
https://figshare.com/articles/Guam_Sponge_Microbial_OTU_abundance_Taxonomy_Greengenes_/2063280
Dataset
CowPI: A Rumen Microbiome Focussed Version of the PICRUSt Functional Inference Software
Wilkinson, T. J. (Creator), Huws, S. A. (Creator), Edwards, J. (Creator), Kingston-Smith, A. H. (Creator), Siu-Ting, K. (Creator), Hughes, M. (Creator), Rubino, F. (Creator), Friedersdorff, M. (Creator), Creevey, C. J. (Creator), 25 May 2018
Dataset
A specific synbiotic-containing amino acid-based formula in dietary management of cow’s milk allergy: a randomized controlled trial
Fox, A. T. (Creator), Wopereis, H. J. (Creator), Van Ampting, M. T. J. (Creator), Oude Nijhuis, M. M. (Creator), Butt, A. M. (Creator), Peroni, D. G. (Creator), Vandenplas, Y. (Creator), Candy, D. C. A. (Creator), Shah, N. (Creator), West, C. E. (Creator), Garssen, J. (Creator), Harthoorn, L. F. (Creator), Knol, J. (Creator), Michaelis, L. J. (Creator), Wageningen University and Research, 15 Jan 2019
DOI: 10.6084/m9.figshare.c.4366751
Dataset
Anaerobic degradation of sulfated polysaccharides by two novel Kiritimatiellales strains isolated from Black Sea sediment
van Vliet, D. (Creator), Palakawong Na Ayudthaya, S. (Creator), Diop, S. (Creator), Villanueva, L. (Creator), Stams, F. (Creator), Sanchez Andrea, I. (Creator), Wageningen University, 1 Apr 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB24761
Dataset
Supplementary data : Peng, K, Van Oers, M.M., Hu, Z., Van Lent, J.W.M. and Vlak, J.M. (2010), Baculovirus Per Os Infectivity Factors Form a Complex on the Surface of Occlusion-Derived Virus. Journal of Virology, 84: 9497-9504. doi: 10.1128/JVI.00812-10
Peng, K. (Creator), van Oers, M. (Creator), Hu, Z. (Creator), van Lent, J. (Creator), Vlak, J. (Creator), Wageningen UR, 19 Jul 2010
Dataset
trxB1 overexpression response to hydrogen peroxide stress in Lactobacillus plantarum WCFS1
Serrano, L. M. (Creator), Molenaar, D. (Creator), Wels, M. W. W. (Creator), Teusink, B. (Creator), Bron, P. A. (Creator), de Vos, W. (Creator), Smid, E. (Creator), TI Food and Nutrition, 12 Jul 2007
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE8348
Dataset
Identification of prebiotic fructooligosaccharide metabolism in Lactobacillus plantarum WCFS1 through microarrays
Saulnier, D. M. (Creator), Molenaar, D. (Creator), de Vos, W. (Creator), Gibson, G. R. (Creator), Kolida, S. (Creator), Vrije Universiteit Amsterdam, 13 Feb 2007
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5882
Dataset
Batch wt vs hyper +_- pABA Normal int_Filtered fg-bg2
Mars, A. (Creator), Faijes, M. (Creator), Molenaar, D. (Creator), de Vos, R. C. (Creator), Klaus, S. M. (Creator), Hanson, A. D. (Creator), de Vos, W. (Creator), Smid, E. (Creator), NIZO, 31 May 2008
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE8956
Dataset
Lifestyle of lactobacillus plantarum in the mouse cecum
Marco, M. L. (Creator), Peters, T. H. F. (Creator), Bongers, R. S. (Creator), Molenaar, D. (Creator), van Hemert, S. (Creator), Gordon, J. I. (Creator), Kleerebezem, M. (Creator), Vrije Universiteit Amsterdam, 1 Aug 2008
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11383
Dataset
Ethanol stress response in Lactobacillus plantarum WCFS1
van Bokhorst-van de Veen, H. (Creator), Rojo-Bezares, B. (Creator), Bongers, R. S. (Creator), Tempelaars, M. (Creator), Molenaar, D. (Creator), Marco, M. (Creator), Abee, T. (Creator), Kleerebezem, M. (Creator), NIZO, 1 Jan 2010
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE17847
Dataset
AER-ANA_Filtered bkgr.correction transf-norm
Serrano, L. M. (Creator), Molenaar, D. (Creator), Teusink, B. (Creator), de Vos, W. (Creator), Smid, E. (Creator), TI Food and Nutrition, 16 Aug 2007
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE8743
Dataset
Thermus thermophilus HB27 WT vs HB27Δago RNAseq
Swarts, D. (Creator), Westra, E. (Creator), van der Oost, J. (Creator), Wageningen UR, 17 Feb 2014
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52738
Dataset
Microbiota facilitates dietary heme-induced epithelial hyperproliferation and hyperplasia by breaking the mucus barrier
IJssennagger, N. (Creator), Belzer, C. (Creator), Hooiveld, G. (Creator), Dekker, J. (Creator), Muller, M. (Creator), Kleerebezem, M. (Creator), van der Meer, R. (Creator), Wageningen University, 3 Aug 2015
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40670
Dataset
Mucosal responses of healthy humans to three different probiotic Lactobacillus bacteria
van Baarlen, P. (Creator), Kleerebezem, M. (Creator), Brummer, R. M. (Creator), van der Meer, C. (Creator), Hooiveld, G. (Creator), Troost, F. J. (Creator), Boekschoten, M. (Creator), Wageningen University, 8 Sep 2010
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE18741
Dataset
CRISPR Cas3 Plasmid degradation assays
Kunne, T. A. (Creator), Kieper, S. (Creator), Bannenberg, J. W. (Creator), Vogel, A. I. M. (Creator), Miellet, W. (Creator), Klein, M. (Creator), Depken, M. (Creator), Suarez Diez, M. (Creator), Brouns, S. J. J. (Creator), Wageningen University, 16 Aug 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB13999
Dataset