Datasets
Search results
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Transcriptomics datasets for Clostridium autoethanogenum grown on CO in different environmental conditions
Diender, M. (Creator), Koehorst, J. (Creator) & Machado de Sousa, D. (Creator), Wageningen University & Research, 25 Jan 2019
DOI: 10.4121/uuid:b6bd64a9-5bdb-4655-9829-520aa4600987
Dataset
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Cultured bacterial diversity of sponges still largely unexplored: a cultivation study of three Mediterranean sponges
Versluis, D. (Creator), Mcpherson, K. R. (Creator), van Passel, M. W. J. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University, 22 Apr 2015
https://www.ebi.ac.uk/ena/data/view/PRJEB8621
Dataset
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The Core Equine Faecal Microbiome: A Broader Perspective
Edwards, J. (Creator), Shetty, S. (Creator), van den Berg, P. (Creator), Burden, F. (Creator), van Doorn, D. A. (Creator), Pellikaan, W. (Creator), Dijkstra, J. (Creator) & Smidt, H. (Creator), Wageningen University, 20 Apr 2019
https://www.ebi.ac.uk/ena/data/view/PRJEB31377
Dataset
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Supplementary material: Sulfidogenic bacteria enriched from deep anoxic Black Sea sediment and the description of Desulfopila canfieldii sp. nov.
van Vliet, D. (Creator) & Bale, N. J. (Creator), Wageningen University & Research, 15 Dec 2020
DOI: 10.4121/13317545
Dataset
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Differences exist in the faecal microbiota of domesticated equines
Edwards, J. (Creator), Schennink, A. (Creator), Burden, F. (Creator), Long, S. (Creator), van Doorn, D. A. (Creator), Pellikaan, W. (Creator), Dijkstra, J. (Creator), Saccenti, E. (Creator) & Smidt, H. (Creator), Wageningen University, 6 Jan 2020
https://www.ebi.ac.uk/ena/data/view/PRJEB32772
Dataset
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Gender and strain dependent differences in intestinal immunology correlate with differences in microbiota composition (colon)
Elderman, M. (Creator), Hugenholtz, F. (Creator), Belzer, C. (Creator), Boekschoten, M. (Creator), van Beek, A. A. (Creator), de Haan, B. J. (Creator), Savelkoul, H. (Creator), de Vos, P. (Creator) & Faas, M. M. (Creator), Wageningen University, 27 Jun 2018
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE85911
Dataset
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Genome sequence of the rat gut bacterium Romboutsia ilealis CRIB
Gerritsen, J. (Creator), Timmerman, H. M. (Creator), Fuentes, S. (Creator), van Minnen, L. P. (Creator), Panneman, H. (Creator), Konstantinov, S. R. (Creator), Rombouts, F. M. (Creator), Gooszen, H. G. (Creator), Akkermans, L. M. A. (Creator), Smidt, H. (Creator) & Rijkers, G. T. (Creator), Wageningen University, 31 Mar 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB4727
Dataset
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Paired Omics Data Platform
Verhoeven, S. (Creator), Schorn, M. (Creator), Willighagen, E. L. (Creator) & van der Hooft, J. (Creator), 1 May 2019
Dataset
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Data and analysis of diet-induced and obesity-associated alterations of gut microbiota of 129S6/Sv and C57BL/6J mice
Xiao, L. (Creator), Sonne, S. B. (Creator), Feng, Q. (Creator), Chen, N. (Creator), Xia, Z. (Creator), Li, X. (Creator), Fang, Z. (Creator), Fjære, E. (Creator), Derrien, M. M. N. (Creator), Hugenholtz, F. (Creator) & Kleerebezem, M. (Creator), 25 Jan 2017
DOI: 10.5524/100271, https://www.ebi.ac.uk/ena/data/view/PRJEB10308
Dataset
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Listeria monocytogenes SOS response determined after mitomycin C exposure
van der Veen, S. (Creator), van Schalkwijk, S. (Creator), Molenaar, D. (Creator), de Vos, W. (Creator), Abee, T. (Creator) & Wells-Bennik, M. H. J. (Creator), Wageningen University, 25 Nov 2009
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12634
Dataset
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Sequencing the bacterial metatranscriptome associated with the marine sponge Crambe crambe
Versluis, D. (Creator), D'Andrea, M. M. (Creator), Ramiro Garcia, J. (Creator), Leimena, M. M. (Creator), Hugenholtz, F. (Creator), Zhang, J. (Creator), Ozturk, B. (Creator), Nylund, L. (Creator), Sipkema, D. (Creator), van Schaik, W. (Creator), de Vos, W. (Creator), Kleerebezem, M. (Creator), Smidt, H. (Creator) & van Passel, M. W. J. (Creator), Wageningen University, 7 Dec 2015
https://www.ebi.ac.uk/ena/data/view/PRJEB7474
Dataset
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Genome sequencing of one-carbon degrading acetogenic bacteria Sporomusa An4
Visser, M. (Creator), Pieterse, M. M. (Creator), Pinkse, M. W. H. (Creator), Nijsse, B. (Creator), Verhaert, P. D. E. M. (Creator), de Vos, W. (Creator) & Stams, F. (Creator), Wageningen University, 28 Feb 2015
https://www.ebi.ac.uk/ena/data/view/PRJEB8443
Dataset
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Metabolic flexibility of a prospective bioremediator: Desulfitobacterium hafniense Y51 challenged in chemostats
Tian, Y. (Creator) & Suarez, M. D. (Creator), Wageningen University, 21 Nov 2017
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107146
Dataset
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Comparative genomics, symbiotic capacities and high metabolic flexibility of the marine genus Pseudovibrio
Versluis, D. (Creator), Nijsse, B. (Creator), Mohamad, M. A. N. (Creator), Koehorst, J. (Creator), Wiese, J. (Creator), Imhoff, J. F. (Creator), Schaap, P. (Creator), van Passel, M. W. J. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University, 28 Jun 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB20602
Dataset
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Benzene reactor liquid, biofilm sampling
van der Waals, M. (Creator), Atashgahi, S. (Creator), da Rocha, U. N. (Creator), van der Zaan, B. M. (Creator), Smidt, H. (Creator) & Gerritse, J. (Creator), Wageningen University, 21 Mar 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB18709
Dataset
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Area of habitation strongly influences faecal microbial composition of wild lemurs
Umanetc, A. (Creator), de Winter, I. (Creator), IJdema, F. (Creator), Ramiro Garcia, J. (Creator), van Hooft, P. (Creator), Heitkonig, I. (Creator), Prins, H. (Creator) & Smidt, H. (Creator), Wageningen University, 31 May 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB20007
Dataset
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High throughput cultivation-based screening on the MicroDish platform allows targeted isolation of antibiotic resistant human gut bacteria
Versluis, D. (Creator), Bello Gonzalez, T. (Creator), Zoetendal, E. (Creator), van Passel, M. (Creator) & Smidt, H. (Creator), Wageningen University, 9 Jan 2019
https://www.ebi.ac.uk/ena/data/view/PRJEB27463
Dataset
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Biodegradation of cis-Dichloroethene and Vinyl Chloride at Oxic/anoxic Interface of Freshwater Sediment Under Redox Fluctuations
Atashgahi, S. (Creator), Lu, Y. (Creator), Ramiro Garcia, J. (Creator), Peng, P. (Creator), Maphosa, F. (Creator), Sipkema, D. (Creator), Dejonghe, W. (Creator), Smidt, H. (Creator) & Springael, D. (Creator), Wageningen University & Research, 30 Mar 2017
https://www.ebi.ac.uk/ena/browser/view/PRJEB14318
Dataset
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RNA-targeting by the Type III-A CRISPR-Cas complex of Thermus thermophilus
Staals, R. (Creator), Zhu, Y. (Creator), Taylor, D. W. (Creator), Kornfeld, J. E. (Creator), Sharma, K. (Creator), Barendregt, A. (Creator), Koehorst, J. (Creator), Vlot, M. (Creator), Neupane, N. (Creator), Varossieau, K. (Creator), Sakamoto, K. (Creator), Suzuki, T. (Creator), Schaap, P. (Creator), Urlaub, H. (Creator), Heck, A. J. R. (Creator), Nogales, E. (Creator), Doudna, J. A. (Creator), Shinkai, A. (Creator) & van der Oost, J. (Creator), Wageningen University, 9 Oct 2014
http://www.ebi.ac.uk/ena/data/view/PRJEB7461
Dataset
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Uncultured bacterium expoxyalkane:coenzyme transferase gene, partial cds
Atashgahi, S. (Creator), Lu, Y. (Creator), Ramiro Garcia, J. (Creator), Peng, P. (Creator), Maphosa, F. (Creator), Sipkema, D. (Creator), Dejonghe, W. (Creator), Smidt, H. (Creator) & Springael, D. (Creator), Wageningen University & Research, 23 Jan 2017
https://www.ncbi.nlm.nih.gov/popset/?term=1132402361
Dataset
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Effects of seasonality and previous logging on wild lemur gastrointestinal microbial composition, nematode infections and their interactions
Umanetc, A. (Creator), Wageningen University, 4 Jan 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB20227
Dataset
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Genome sequence of Romboutsia str. Frifi
Gerritsen, J. (Creator), Umanetc, A. (Creator), van Leeuwen-Staneva, I. N. (Creator), Hornung, B. V. H. (Creator), Ritari, J. (Creator), Paulin, L. (Creator), Rijkers, G. T. (Creator), de Vos, W. (Creator) & Smidt, H. (Creator), Wageningen University, 17 Mar 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB7106
Dataset
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Do apes smell like humans? The role of skin bacteria and volatiles of primates in mosquito host selection
Verhulst, N. (Creator), Umanetc, A. (Creator), Weldegergis, B. (Creator), Maas, J. P. A. (Creator), Visser, T. (Creator), Dicke, M. (Creator), Smidt, H. (Creator) & Takken, W. (Creator), Wageningen University, 8 Nov 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB28608
Dataset
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Effects of Gut Microbiota Manipulation by Antibiotics on Host Metabolism in Obese Humans: a Randomized Double-blind Placebo-controlled Trial
Reijnders, D. (Creator), Goossens, G. H. (Creator), Neis, E. P. J. G. (Creator), van der Beek, C. M. (Creator), Most, J. (Creator), Holst, J. J. (Creator), Lenaerts, K. (Creator), Kootte, R. S. (Creator), Nieuwdorp, M. (Creator), Groen, A. K. (Creator), Boekschoten, M. (Creator), Hermes, G. (Creator), Smidt, H. (Creator), Zoetendal, E. (Creator), Dejong, C. H. C. (Creator) & Blaak, E. E. (Creator), Wageningen University, 15 Jul 2016
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76003
Dataset
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Impact of a wastewater treatment plant on microbial community composition and function in a hyporheic zone of a eutrophic river
Atashgahi, S. (Creator), Aydin, R. (Creator), Rocha Dimitrov, M. (Creator), Sipkema, D. (Creator), Hamonts, K. (Creator), Lahti, L. (Creator), Maphosa, F. (Creator), Kruse, T. (Creator), Saccenti, E. (Creator), Springael, D. (Creator), Dejonghe, W. (Creator) & Smidt, H. (Creator), Wageningen University, 29 Oct 2015
https://www.ebi.ac.uk/ena/data/view/PRJEB8703
Dataset