Microbiology

Search results

• Transcriptomics datasets for Clostridium autoethanogenum grown on CO in different environmental conditions

  Diender, M. (Creator), Koehorst, J. (Creator) & Machado de Sousa, D. (Creator), Wageningen University & Research, 25 Jan 2019

  DOI: 10.4121/uuid:b6bd64a9-5bdb-4655-9829-520aa4600987

  Dataset

• Data underlying the publication: ‘Effects of E. coli Nissle 1917 on the Porcine Gut Microbiota and Immune System in Early Life’

  Geervliet, M. (Creator), de Vries, H. (Creator), Jansen, C. (Creator), Rutten, V. (Creator), van Hees, H. M. J. (Creator), Wen, C. (Creator), Skovgaard, K. (Creator), Antonello, G. (Creator), Savelkoul, H. (Creator), Smidt, H. (Creator), Tijhaar, E. (Creator) & Wells, J. (Creator), Wageningen University & Research, 9 Feb 2022

  DOI: 10.4121/15060177

  Dataset

• Giardia intestinalis Raw sequence reads

  Onsbring, H. (Creator), Tice, A. K. (Creator), Barton, B. T. (Creator), Brown, M. W. (Creator) & Ettema, T. (Creator), 1 Jun 2019

  https://www.ncbi.nlm.nih.gov/bioproject/?term=prjna545787

  Dataset

• Gutleben_et.al_Halogenases_Aplysinas

  Gutleben, J. (Creator), Wageningen University & Research, 2019

  https://github.com/mibwurrepo/Gutleben_et.al_Halogenases_Aplysinas

  Dataset

• Effects of seasonality and previous logging on wild lemur gastrointestinal microbial composition, nematode infections and their interactions

  Umanetc, A. (Creator), Wageningen University, 4 Jan 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB20227

  Dataset

• RNA-seq of a degenerated spoIIE deficient Clostridium beijerinckii NCIMB 8052 at 4, 11 and 24 hours of fermentation

  Diallo, M. (Creator), Wageningen Food & Biobased Research, 30 Jun 2020

  https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-9201/

  Dataset

• Determination of variability of fermentor-grown Aspergillus niger

  van der Veen, D. (Creator), Pimenta Ferreira De Oliveira, J. (Creator), van den Berg, W. (Creator) & de Graaff, L. (Creator), Wageningen University and Research Centre, 31 Dec 2008

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11405

  Dataset

• Campylobacter jejuni Cas9 is necessary for efficient infection of Caco-2 cells and cell stress induction

  van Baarlen, P. (Creator), Louwen, R. (Creator) & van der Oost, J. (Creator), Wageningen University, 30 Sept 2018

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE89661

  Dataset

• Development of the intestinal microbiota in preterm infants during the first six postnatal weeks determined by 454 pyrosequencing of the 16S rRNA gene

  Zwittink, R. D. (Creator), van Zoeren-Grobben, D. (Creator), Martin, R. (Creator), van Lingen, R. A. (Creator), Groot Jebbink, L. J. (Creator), Boeren, S. (Creator), Renes, I. B. (Creator), Van Elburg, R. M. (Creator), Belzer, C. (Creator) & Knol, J. (Creator), Wageningen University, 9 Mar 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB18915

  Dataset

• Propionate converting anaerobic microbial communities enriched from distinct biogeochemical zones of Aarhus Bay, Denmark under sulfidogenic and methanogenic conditions

  Ozuolmez, D. (Creator), Stams, F. (Creator) & Plugge, C. (Creator), Wageningen University, 14 Apr 2020

  https://www.ebi.ac.uk/ena/data/view/PRJEB36640

  Dataset

• Childhood BMI in relation to microbiota in infancy and lifetime antibiotic use

  Korpela, K. (Creator), Zijlmans, M. A. C. (Creator), Kuitunen, M. (Creator), Kukkonen, K. (Creator), Savilahti, E. (Creator), Salonen, A. (Creator), de Weerth, C. (Creator) & de Vos, W. (Creator), University of Helsinki, 3 Mar 2017

  DOI: 10.6084/m9.figshare.c.3708112

  Dataset

• Supplementary material: Transcriptome analysis of fucoidan and L-fucose degradation by Pontiella desulfatans F1(T)

  van Vliet, D. (Creator), Wageningen University & Research, 15 Dec 2020

  DOI: 10.4121/13317587

  Dataset

• Human fecal samples microbial 16S rRNA gene sequence

  van Dongen, K. (Creator), van der Zande, M. (Creator), Bruyneel, B. (Creator), Vervoort, J. (Creator), Rietjens, I. (Creator), Belzer, C. (Creator) & Beekmann, K. (Creator), Wageningen University, 1 Mar 2021

  https://www.ebi.ac.uk/ena/browser/view/PRJEB39539

  Dataset

• Complete genome sequence of the Akkermansia glycaniphila strain PytT a mucin-degrading specialist of the reticulated python gut

  Ouwerkerk, J. P. (Creator), Koehorst, J. (Creator), Schaap, P. (Creator), Ritari, J. (Creator), Paulin, L. (Creator), Belzer, C. (Creator) & de Vos, W. (Creator), Wageningen University, 2 Sept 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB15121

  Dataset

• A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

  Martens, L. (Creator), Koehorst, J. (Creator), van Heck, R. (Creator), Suarez Diez, M. (Creator), Stams, F. (Creator) & Schaap, P. (Creator), Wageningen University & Research, 7 Jan 2021

  DOI: 10.6084/m9.figshare.13533055

  Dataset

• Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species

  Strepis, N. (Creator), Naranjo, H. D. (Creator), Meier-Kolthoff, J. P. (Creator), Göker, M. (Creator), Shapiro, N. (Creator), Kyrpides, N. C. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, F. (Creator) & Machado de Sousa, D. (Creator), Wageningen University & Research, 9 Jan 2020

  DOI: 10.6084/m9.figshare.c.4810569

  Dataset

• Metabolic engineering of Clostridium autoethanogenum for ethyl acetate production from CO

  Dykstra, J. (Creator), van Oort, J. (Creator), Yazdi, A. T. (Creator), Vossen, E. (Creator), Patinios, C. (Creator), van der Oost, J. (Creator), Machado de Sousa, D. (Creator) & Kengen, S. (Creator), Wageningen University, 25 Nov 2022

  DOI: 10.6084/m9.figshare.c.6317418

  Dataset

• Genome sequencing of one-carbon degrading acetogenic bacteria Moorella glycerini Strain NMP

  Liebensteiner, M. (Creator), Pinkse, M. W. H. (Creator), Nijsse, B. (Creator), Verhaert, P. D. E. M. (Creator), Tsesmetzis, N. (Creator), Stams, A. J. M. (Creator) & Lomans, B. P. (Creator), Wageningen University, 5 Feb 2015

  http://www.ebi.ac.uk/ena/data/view/PRJEB8377

  Dataset

• Desulfurella amilsii strain:TR1 Genome sequencing and assembly

  Florentino de Souza Silva, A. (Creator), Stams, F. (Creator) & Sanchez Andrea, I. (Creator), Wageningen University & Research, 1 May 2017

  https://www.ncbi.nlm.nih.gov/bioproject/336485

  Dataset

• Comparative genomic and physiological analysis of Trichococcus species

  Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB12709

  Dataset

• Comparative genomic and physiological analysis of Trichococcus species

  Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB12706

  Dataset

• Comparative genomic and physiological analysis of Trichococcus species

  Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, T. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. (Creator), Wageningen University, 10 Apr 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB12707

  Dataset

• Characterization of bacterial and archeal communities associated to dietary adaptations of grass and maize silage based diets

  Vaidya, J. (Creator), van Gastelen, S. (Creator), Smidt, H. (Creator), Plugge, C. (Creator) & Edwards, J. (Creator), Wageningen University, 11 Mar 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB24373

  Dataset

• Microbial community response of an organohalide respiring enrichment culture to permanganate oxidation

  Sutton, N. (Creator), Atashgahi, S. (Creator), Saccenti, E. (Creator), Grotenhuis, T. (Creator), Smidt, H. (Creator) & Rijnaarts, H. (Creator), Wageningen University, 29 May 2015

  https://www.ebi.ac.uk/ena/data/view/PRJEB8632

  Dataset

• Genome sequence of organohalide-respiring Desulfoluna spongiiphila DBB and Desulfoluna butyratoxydans MSL71T

  Peng, P. (Creator), Goris, T. (Creator), Lu, Y. (Creator), Nijsse, B. (Creator), Burrichter, A. (Creator), Schleheck, D. (Creator), Koehorst, J. (Creator), Liu, J. (Creator), Sipkema, D. (Creator), Sinninghe Damste, J. S. (Creator), Stams, F. (Creator), Häggblom, M. M. (Creator), Smidt, H. (Creator) & Atashgahi, S. (Creator), Wageningen University, 15 May 2019

  https://www.ebi.ac.uk/ena/data/view/PRJEB31368

  Dataset