Research Output 1976 2020

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2019

Basic Phytochrome B Calculations

Smith, R. W. & Fleck, C., 18 Jul 2019, Phytochromes: Methods and Protocols. Hiltbrunner, A. (ed.). Humana Press Inc., p. 121-133 13 p. (Methods in Molecular Biology; vol. 2026).

Research output: Chapter in Book/Report/Conference proceedingChapter

Phytochrome B
Phytochrome
Boidae
Plant Development
Cell Nucleus Active Transport

Conclusion

Wehrens, H. R. M. J. & Salek, R., 19 Aug 2019, Metabolomics: Practical Guide to Design and Analysis. Wehrens, R. & Salek, R. (eds.). 1st ed. New York: Chapman and Hall, 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

metabolomics
computer science
mathematics and statistics
chemistry
mass spectrometry

Measurement Technologies

Yanes, O., Hollywood, K., Mumm, R., Vinaixa, M., Rankin, N., Wehrens, H. R. M. J. & Salek, R., 19 Aug 2019, Metabolomics: Practical Guide to Design and Analysis. Wehrens, R. & Salek, R. (eds.). 1st ed. New York: Chapman and Hall, 38 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mass spectrometry
Capillary electrophoresis
Liquid chromatography
Metabolites
Ultraviolet spectroscopy

Statistics: The Essentials

Wehrens, H. R. M. J. & Franceschi, P., 19 Aug 2019, Metabolomics: Practical Guide to Design and Analysis. Wehrens, R. & Salek, R. (eds.). 1st ed. New York: Chapman and Hall, 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

multivariate analysis
visualization
software
statistics
method

Study Design and Preparation

Franceschi, P., Yanes, O. & Wehrens, H. R. M. J., 19 Aug 2019, Metabolomics: Practical Guide to Design and Analysis. Wehrens, R. & Salek, R. (eds.). 1st ed. New York: Chapman and Hall, 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

preparation
muscles
liver
2018

Food for thought: Diedrich Bruns as a researcher

van den Brink, A. & Tobi, H., 2018, Diedrich Bruns wird gelehrt haben: Eine Festschrift. Hennecke, S., Kegler, H., Klaczynski, K. & Münderlein, D. (eds.). Kassel: University of Kassel, p. 34-47

Research output: Chapter in Book/Report/Conference proceedingChapter

Modelling the Plant Microtubule Cytoskeleton

Deinum, E. E. & Mulder, B. M., 6 Nov 2018, Mathematical Modelling in Plant Biology. Morris, R. J. (ed.). Springer International Publishing, p. 53-67 Chapter 4

Research output: Chapter in Book/Report/Conference proceedingChapter

cytoskeleton
microtubules
physics
complement
genes
2017

6. Vegetatiedynamiek in duinen en duinvalleien op Oost-Ameland

Kuiters, A. T., de Vries, D., Brus, D. J., Heidema, A. H., Huiskes, H. P. J., Slim, P. A., van Dobben, H. F. & Krol, J., Sep 2017, Monitoring effecten van bodemdaling op Oost-Ameland. de Vlas, J. (ed.). p. 375-482

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access

Distribution of month of birth of individuals with autism spectrum disorder differs from the general population in the Netherlands

Ciéslińska, A., Simmelink, J., Teodorowicz, M., Verhoef, J. C. M., Tobi, H. & Savelkoul, H. F. J., 12 Apr 2017, Autism - Paradigms, Recent Research and Clinical Applications. Fitzgerald, M. & Yip, J. (eds.). InTech, 43 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
Netherlands
Parturition
Population
Asperger Syndrome
Autistic Disorder
2 Citations (Scopus)

Empirical methods of identifying and quantifying trophic interactions for constructing soil food-web models

Heijboer, A., Ruess, L., Traugott, M., Jousset, A. & de Ruiter, P. C., Dec 2017, Adaptive Food Webs: Stability and Transitions of Real and Model Ecosystems. Cambridge University Press, Vol. II. p. 257-286 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

soil food webs
Food Chain
trophic interaction
food webs
food web

Linking ecology and epidemiology: The case of infected resource

Selakovic, S., de Ruiter, P. C. & Heesterbeek, H., Dec 2017, Adaptive Food Webs: Stability and Transitions of Real and Model Ecosystems. Moore, J. C., de Ruiter, P. C., McCann, K. S. & Wolters, V. (eds.). Cambridge University Press, Vol. III. p. 384-405 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biota
epidemiology
Ecology
Ecosystem
Epidemiology

Proficiency tests, Evaluating

Cofino, W. P., Molenaar, J. & Torfs, P. J. J. F., 2017, Wiley StatsRef: Statistics Reference Online. Davidian, M., Everitt, B., Kenett, R. S., Molenberghs, G., Piegorsch, W. & Ruggeri, F. (eds.). Wiley, p. 1-8

Research output: Chapter in Book/Report/Conference proceedingChapter

skewness
marine environment
comparative study
test
programme

Robust and confident predictor selection in metabolomics

Hageman, J. A., Engel, B., de Vos, C. H., Mumm, R., Hall, R. D., Jwanro, H., Crouzillat, D., Spadone, C. & van Eeuwijk, F. A., 2017, Statistical Analysis of Proteomics, Metabolomics, and Lipidomics Data Using Mass Spectrometry; Frontiers in Probability and the Statistical Sciences. Datta, S. & Mertens, B. J. A. (eds.). Springer, p. 239-257 (Frontiers in Probability and the Statistical Sciences).

Research output: Chapter in Book/Report/Conference proceedingChapter

metabolomics
metabolites
chocolate liquor
biomarkers
foods

Species-specific genome sequence databases: A practical review

van Dijk, A-J., 2017, Plant genomics databases: Methods and Protocols. van Dijk, A. D. J. (ed.). Humana Press Inc., p. 173-181 (Methods in Molecular Biology; vol. 1533).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genome
Databases
Proteins
2016
20 Citations (Scopus)

Modelling of Genotype by Environment Interaction and Prediction of Complex Traits across Multiple Environments as a Synthesis of Crop Growth Modelling, Genetics and Statistics

Bustos Korts, D., Malosetti, M., Chapman, S. & van Eeuwijk, F., 2016, Crop Systems Biology : Narrowing the Gaps Between Crop Modelling and Genetics. Yin, X. & Struik, P. C. (eds.). Springer International Publishing, p. 55-82

Research output: Chapter in Book/Report/Conference proceedingChapter

statistics
crop models
synthesis
prediction
genotype
2015
3 Citations (Scopus)

Computational and Experimental Evidence That Auxin Accumulation in Nodule and Lateral Root Primordia Occurs by Different Mechanisms

Deinum, E. E., Geurts, R., Hartog, M., Bisseling, T. & Mulder, B. M., 1 Jan 2015, Biological Nitrogen Fixation. de Bruijn, F. J. (ed.). First Edition ed. Wiley-Blackwell, Vol. 2. p. 659-668 10 p. Chapter 66

Research output: Chapter in Book/Report/Conference proceedingChapter

Indoleacetic Acids
Computer Simulation
Fabaceae
2014

An integral approach to validation of analytical fiingerprinting methods in combination with chemometric modelling for food quality assurance

van der Veer, G., van Ruth, S. M. & Hageman, J. A., 2014, Mathematical and Statistical Methods in Food Science and Technology. Granato, D. & Ares, G. (eds.). Hoboken: Wiley, p. 449 / 23 536 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

History of canonical correspondence analysis

ter Braak, C. J. F., 2014, Visualization and verbalization of Data. Blasius, J. & Greenacre, M. (eds.). Londen, p. 61-75 392 p. (Chapman & Hall/CRC Computer Science & Data Analysis).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
2013

Genotype by Environment Interaction and Adaptation

Romagosa, I., Borràs-Gelonch, G., Slafer, G. & van Eeuwijk, F. A., 2013, Sustainable Food Production. Christou, P. & Savin, R. (eds.). New York: Springer Verlag, p. 846-870

Research output: Chapter in Book/Report/Conference proceedingChapter

Modeling cell division and endoreplication in tomato fruit pericarp

Apri, M., Kromdijk, J., de Visser, P. H. B., de Gee, M. & Molenaar, J., 2013, Tackling Complex Models in Systems Biology. Wageningen UR, p. 85-106 130 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2012
19 Citations (Scopus)

Explicit treatment of water molecules in data-driven protein-protein docking: the solvated HADDOCKing approach.

Kastritis, P. L., van Dijk, A. D. J. & Bonvin, A. M., 2012, Computational Drug Discovery and Design . Baron, R. (ed.). New York: Springer Science + Business Media, p. 355-374 (Methods in Molecular Biology ; vol. 819).

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecules
Water
Proteins
Hydrogen bonds
Crystal structure
1 Citation (Scopus)

Updating legacy soil data for digital soil mapping

Kempen, B., Brus, D. J., de Vries, F. & Engel, B., 2012, Digital Soil Assessments and Beyond: Proceedings of the fifth Global Workshop on Digital Soil Mapping, Sydney, Australia, 10-13 April 2012. Minasny, B., Malone, B. P. & McBratney, A. B. (eds.). Sydney, Australia: CRC Press, p. 91-96

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
2011

Greenhouse design optimisation for Southern-Spanish and Dutch conditions

Vanthoor, B. H. E., Stigter, J. D., van Henten, E. J., Stanghellini, C. & de Visser, P. H. B., 2011, A model-based greenhouse design method. Vanthoor, B. H. E. (ed.). Wageningen: Wageningen University, p. 151-185 312 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Citations (Scopus)

Metabolic Pathway Inference from Time Series Data: A Non Iterative Approach

Astola, L. J., Groenenboom, M. A. C., Gomez Roldan, M. V., van Eeuwijk, F. A., Hall, R. D., Bovy, A. G. & Molenaar, J., 2011, Pattern Recognition in Bioinformatics : 6th IAPR International Conference, PRIB 2011, Delft, The Netherlands, 2-4 November 2011. Loog, M. & Wessels, L. (eds.). Berlin [etc.], p. 97-108 (Lecture notes in computer science; no. 7036).

Research output: Chapter in Book/Report/Conference proceedingChapter

time series
reaction rate
method
secondary metabolite
metabolite

Model Structure Indentification and the Growth of Knowledge

Beck, M. B., Lin, Z. & Stigter, J. D., 2011, System Identification, Environmental Modelling, and Control System Design. Wang, L. & Garnier, H. (eds.). London: Springer Verlag, p. 69-96

Research output: Chapter in Book/Report/Conference proceedingChapter

Privilege
Modeling

The statistical analysis of multienvironment data: modelling genotype-by-environment interaction and its genetic basis

Malosetti, M., Ribaut, J. M. & van Eeuwijk, F. A., 2011, Drought phenotyping in crops: from theory to practice. Monneveux, P. & Ribaut, J. M. (eds.). Texcoco, Mexico: CGIAR Generation Challenge Programme, p. 123-151 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2010

Visited sites revisited - site fidelity in African elephants

de Knegt, H. J., Pretorius, Y., van Langevelde, F., de Boer, W. F., Gort, G., Skidmore, A. K., Slotow, R., Henley, S., Delsink, A., Grant, C. C. & Prins, H. H. T., 2010, Beyond the here and now. de Knegt, H. J. (ed.). Wageningen: Wageningen University, p. 35-46 141 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2009

Diet selection of African elephant over time shows changing optimization currency

Pretorius, Y., Stigter, J. D., de Boer, W. F., van Wieren, S. E., de Jong, C. B., de Knegt, H. J., Grant, C. C., Heitkonig, I. M. A., Knox, N., Kohi, E., Mwakiwa, E., Peel, M. J. S., Skidmore, A. K., Slotow, R., van der Waal, C., van Langevelde, F. & Prins, H. H. T., 2009, Satisfying Giant Appetites. Pretorius, Y. (ed.). Wageningen: Wageningen University, p. 57-76 141 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Statistical Analysis of Genotype by Environment Data

Romagosa, I., van Eeuwijk, F. A. & Thomas, W. T. B., 2009, Handbook for Plant Breeding. Vol. 3. Cereals. Pt. 2. Carena, M. J. (ed.). Springer Science + Business Media, p. 1-41

Research output: Chapter in Book/Report/Conference proceedingChapter

Testing the assessment system: refinement and definition

van Reenen, C. G. & Engel, B., 2009, An overview of the development of the welfare quality project assessment systems. Keeling, L. (ed.). Cardiff, UK, p. 33-42 297 p. (Welfare Quality Reports Series; no. 12).

Research output: Chapter in Book/Report/Conference proceedingChapter

2008

Effect of clipping intensity on growth traits and competitve ability of forage grass

Bemigisha, J., van Wieren, S. E., Skidmore, A. K., Stein, A. & de Leeuw, J., 2008, Spectral and human sensors : hyperspectral remote sensing and participatory GIS for mapping livestock grazing intensity and vegetation in transhumant Mediterranean conservation areas. Bemigisha, J. (ed.). Enschede, p. 19-38 156 p. (ITC dissertation; no. 155).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access

Effect of selective clipping on regrowth and competitve ability of forage grass

Bemigisha, J., van Wieren, S. E., Skidmore, A. K., Stein, A., van Ruijven, J. & de Leeuw, J., 2008, Spectral and human sensors : hyperspectral remote sensing and participatory GIS for mapping livestock grazing intensity and vegetation in transhumant Mediterranean conservation areas. Bemigisha, J. (ed.). Enschede, p. 39-50 (ITC dissertations; no. 155).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access

Hyperspectral remote sensing of defoliation intensity and competitive ability of forage grass

Bemigisha, J., Skidmore, A. K., Stein, A., Prins, H. H. T., van Wieren, S. E., Cho, M. A., Sobhan, I. & Schlerf, M., 2008, Spectral and human sensors : hyperspectral remote sensing and participatory GIS for mapping livestock grazing intensity and vegetation in transhumant Mediterranean conservation areas. Bemigisha, J. (ed.). Enschede, p. 51-74 (ITC dissertations; no. 155).

Research output: Chapter in Book/Report/Conference proceedingChapter

Interacción Genotipo por Ambiente

Romagosa, I., Voltas, J., Malosetti, M. & van Eeuwijk, F. A., 2008, La adaptación al ambiente y los estreses abióticos en la mejora vegetal. Ávila Gómez, C. M., Atienza Penas, S. G., Moreno Yangüela, M. T. & Cubero Salmerón, J. I. C. (eds.). Junta de Andalucía, 493 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Stochastic simulation of fruit set in sweet pepper

Wubs, A. M., Bakker, M. J., Heuvelink, E., Hemerik, L. & Marcelis, L. F. M., 2008, Plant growth modelling and applications. Fourcaud, T. & Zhang, X. P. (eds.). Los Alamitos, California, USA: IEEE computer society, p. 40-47 336 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2007

Developments in analysis of spatial uncertainty since 1989

Heuvelink, G. B. M., Burrough, P. A. & Stein, A., 2007, Classics from IJGIS; twenty years of the International Journal of Geographical Information Science and Systems. Fisher, P. (ed.). Boca Raton FL (USA) [etc.]: Taylor & Francis, p. 91-95 572 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Modelling the genetic basis of response curves underlying genotype x environment interaction

van Eeuwijk, F. A., Malosetti, M. & Boer, M. P., 2007, Scale and Complexity in Plant Systems Research: Gene Plant-Crop Relations. Spiertz, J. H. J., Struik, P. C. & van Laar, H. H. (eds.). Dordrecht, p. 115-126 332 p. (Wageningen UR Frontis Series; no. 21).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access

Multi-trait multi-environment qtl modelling for drought-stress adaptation in maize

Malosetti, M., Ribaut, J. M., Vargas, M., Crossa, J., Boer, M. P. & van Eeuwijk, F. A., 2007, Scale and Complexity in Plant Systems Research. Spiertz, J. H. J., Struik, P. C. & van Laar, H. H. (eds.). Dordrecht, p. 25-36 332 p. (Wageningen UR Frontis Series; no. 21).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access

Parasitoid fitness: from a simple idea to an intricate concept

van Baalen, M. & Hemerik, L., 2007, Behavioral Ecology of Insect Parasitoids: From theoretical approaches to field applications. Wajnberg, E., Bernstein, C. & van Alphen, J. (eds.). Oxford, UK: Wiley-Blackwell, p. 31-50 464 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Reflections on modelling and extrapolation in tropical soil Carbon sequestration

van Putten, B. & Amezquita, M. C., 2007, Carbon Sequestration in Tropical Grassland Ecoysystems. Mannetje, L. T., Amezquita, M. C., Buurman, P. & Ibrahim, M. A. (eds.). Wageningen: Wageningen Academic Publishers, p. 143-172

Research output: Chapter in Book/Report/Conference proceedingChapter

2006

Genotype by environment interaction: basics and beyond

van Eeuwijk, F. A., Malosetti, M. & Boer, M. P., 2006, Plant Breeding: The Arnell Hallauer International Symposium. Lamkey, K. & Michael, L. (eds.). Oxford: Blackwell Publishing, p. 155-170 379 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Genotype-by-environment interactions under water limited conditions

Cooper, M., van Eeuwijk, F. A., Chapman, S., Podlich, D. W. & Löffler, C., 2006, Drought adaption in cereals. Ribaut, J. M. (ed.). New York: Haworth Press, p. 51-96 642 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The impact of positional accuracy on the computation of cost functions

Stein, A. & van Oort, P. A. J., 2006, Fundamentals of Spatial Data Quality. Devillers, R. & Jeansoulin, R. (eds.). London: ISTE Ltd, p. 107-122 312 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2005

Alternatieve evenwichten. Experiment

Huisman, T., van Nes, E. H. & Hemerik, L., 2005, Troebele plassen in Nederland. Wageningen, 16 p. (Dossiers VWO campus; no. 79).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
5 Citations (Scopus)

Balancing statistics and ecology: on the lumping of experimental data for model selection

van der Hoeven, N., Hemerik, L. & Jansen, P. A., 2005, Current Themes in Theoretical Biology: A Dutch Perspective. Reydon, T. A. C. & Hemerik, L. (eds.). Dordrecht: Springer, p. 233-265 317 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
4 Citations (Scopus)

Predicting macro-fauna community types from environmental variables by means of support vector machines

Akkermans, W., Verdonschot, P. F. M., Nijboer, R. C., Goedhart, P. W. & ter Braak, C. J. F., 2005, Modelling community structure in freshwater ecosystems. Lek, S., Scardi, M., Verdonschot, P. F. M., Descy, J. P. & Park, Y. S. (eds.). Berlin (Germany) [etc.]: Springer, p. 411-434 518 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Resilience and persistence in the context of stochastic population models

Grasman, J., van Herwaarden, O. A. & Hagenaars, T. H. J., 2005, Current Themes in Theoretical Biology: A. Dutch Perspective. Reydon, T. A. C. & Hemerik, L. (eds.). [S.l.]: Springer, p. 267-280 317 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Soil biodiversity: stress and change in grasslands under restoration succession

Brussaard, L., de Goede, R. G. M., Hemerik, L. & Verschoor, B. C., 2005, Biological Diversity and Function in Soils. Bardgett, R. D., Usher, M. B. & Hopkins, D. W. (eds.). Cambridge: Cambridge University Press, p. 343-362 411 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

The founder and Allee effects in the patch occupancy metapopulation model

Etienne, R. S. & Hemerik, L., 2005, Current Themes in Theoretical Biology: A Dutch Perspective. Reydon, T. A. C. & Hemerik, L. (eds.). [S.l.]: Springer, p. 203-232 317 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
1 Citation (Scopus)

The history of Acta Biotheoretica and the nature of theoretical biology

Reydon, T. A. C., Dullemeijer, P. & Hemerik, L., 2005, Current Themes in Theoretical Biology: A Dutch perspective. Reydon, T. A. C. & Hemerik, L. (eds.). [S.l.]: Springer, p. 1-8 310 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
Theoretical Biology
History
The Netherlands