Research Output 1938 2020

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2020

Combined transcriptome and metabolome analysis identifies defence responses in spider mite-infested pepper (Capsicum annuum)

Zhang, Y., Bouwmeester, H. J. & Kappers, I. F., 1 Jan 2020, In : Journal of Experimental Botany. 71, 1, p. 330-343 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tetranychidae
Capsicum
Metabolome
metabolomics
Gene Expression Profiling

Green and White Asparagus (Asparagus officinalis): A Source of Developmental, Chemical and Urinary Intrigue

Pegiou, I., Mumm, R., Acharya, P., de Vos, C. H. & Hall, R. D., Jan 2020, In : Metabolites. 10, 1, 17.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Asparagus officinalis
asparagus spears
crops
flavor
pyrazines
1 Citation (Scopus)

Halotropism requires phospholipase Dζ1-mediated modulation of cellular polarity of auxin transport carriers

Korver, R. A., van den Berg, T., Meyer, J. A., Galvan-Ampudia, C. S., ten Tusscher, K. H. W. J. & Testerink, C., Jan 2020, In : Plant Cell and Environment. 43, 1, p. 143-158

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Indoleacetic Acids
auxins
Salts
salt stress
Phospholipases

Identification of bioactive phytochemicals in mulberries

D’urso, G., Mes, J. J., Montoro, P., Hall, R. D. & de Vos, R. C. H., 1 Jan 2020, In : Metabolites. 10, 1, 7.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Morus
Glucosidases
Phytochemicals
Antioxidants
Fruit

Seed stored mRNAs that are specifically associated to monosome are translationally regulated during germination

Bai, B., Van Der Horst, S., Cordewener, J., America, T., Hanson, J. & Bentsink, L., 6 Jan 2020, In : Plant Physiology. 182, 1, p. 378-392

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Stored Messenger RNA
Germination
Seeds
germination
seeds

SnRK2 protein kinases and mRNA decapping machinery control root development and response to salt

Kawa, D., Meyer, A. J., Dekker, H. L., Abd-El-Haliem, A., Gevaert, K., Van De Slijke, E., Maszkowska, J., Bucholc, M., Dobrowolska, G., de Jaeger, G., Schuurink, R. C., Haring, M. A. & Testerink, C., Jan 2020, In : Plant Physiology. 182, 1

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
protein kinases
Abscisic Acid
Protein Kinases
Salts
salts
2019
3 Citations (Scopus)

An analysis of characterized plant sesquiterpene synthases

Durairaj, J., Di Girolamo, A., Bouwmeester, H. J., de Ridder, D., Beekwilder, J. & van Dijk, A. D. J., Feb 2019, In : Phytochemistry. 158, p. 157-165

Research output: Contribution to journalArticleAcademicpeer-review

Sesquiterpenes
sesquiterpenoids
terpenoids
Databases
Mutagenesis
3 Citations (Scopus)

Anhydrobiosis: Inside yeast cells

Rapoport, A., Golovina, E. A., Gervais, P., Dupont, S. & Beney, L., 2019, In : Biotechnology Advances. 37, 1, p. 51-67

Research output: Contribution to journalArticleAcademicpeer-review

Microorganisms
Yeast
Yeasts
Cells
Dehydration

Association mapping and genetic dissection of drought-induced canopy temperature differences in rice

Melandri, G., Prashar, A., Mccouch, S. R., Van Der Linden, G., Jones, H. G., Kadam, N., Jagadish, K., Bouwmeester, H., Ruyter-Spira, C. & Dhankher, O. (ed.), 17 Dec 2019, In : Journal of Experimental Botany. erz527.

Research output: Contribution to journalArticleAcademicpeer-review

Droughts
chromosome mapping
Dissection
drought
canopy
1 Citation (Scopus)

DELAY OF GERMINATION 1-LIKE 4 acts as an inducer of seed reserve accumulation

Sall, K., Dekkers, B. J. W., Nonogaki, M., Katsuragawa, Y., Koyari, R., Hendrix, D., Willems, L. A. J., Bentsink, L. & Nonogaki, H., Oct 2019, In : Plant Journal. 100, 1, p. 7-19

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
seed maturation
Seeds
seeds
abscisic acid
genes

DIF verstoort biologische klok en suikerhuishouding en remt lengtegroei. Planten compacter bij gerichte temperatuur- en lichtregimes

van Hoogdalem, M. D., van Ieperen, W., Heuvelink, E. & Kierkels, T., 6 May 2019, In : Onder Glas. 16, 4, p. 40-41

Research output: Contribution to journalArticleProfessional

Open Access
6 Citations (Scopus)

Dissecting the genomic diversification of Late Embryogenesis Abundant (LEA) protein gene families in plants

Silva Artur, M. A., Zhao, T., Ligterink, W., Schranz, E. & Hilhorst, H. W. M., 1 Feb 2019, In : Genome Biology. 11, 2, p. 459-471

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Embryonic Development
genomics
embryogenesis
protein
gene
1 Citation (Scopus)

Functional characterization of genes mediating cell wall metabolism and responses to plant cell wall integrity impairment

Engelsdorf, T., Kjaer, L., Gigli-Bisceglia, N., Vaahtera, L., Bauer, S., Miedes, E., Wormit, A., James, L., Chairam, I., Molina, A. & Hamann, T., 18 Jul 2019, In : BMC Plant Biology. 19, 15 p., 320.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
cell walls
metabolism
genes
cell wall components
Fourier transform infrared spectroscopy

Genetic Loci Associated with Early Salt Stress Responses of Roots

Deolu-Ajayi, A. O., Meyer, A. J., Haring, M. A., Julkowska, M. M. & Testerink, C., 22 Nov 2019, In : iScience. 21, p. 458-473

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
salt stress
stress response
salts
loci
knockout mutants

Genome-level responses to the environment: plant desiccation tolerance

Silva Artur, M. A., Dias Costa, M. C., Farrant, J. M. & Hilhorst, H. W. M., 3 Apr 2019, In : Emerging Topics in Life Sciences. 3, 2, p. 153-163

Research output: Contribution to journalArticleAcademicpeer-review

genome
evolutionary adaptation
embryophytes
drought tolerance
crop production

Gibberellin Promotes Sweetpotato Root Vascular Lignification and Reduces Storage-Root Formation

Singh, V., Sergeeva, L., Ligterink, W., Aloni, R., Zemach, H., Doron-Faigenboim, A., Yang, J., Zhang, P., Shabtai, S. & Firon, N., 15 Nov 2019, In : Frontiers in Plant Science. 10, 1320.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
lignification
blood vessels
gibberellins
sweet potatoes
lignin

Histone Deacetylase 9 stimulates auxin-dependent thermomorphogenesis in Arabidopsis thaliana by mediating H2A.Z depletion

van der Woude, L. C., Perrella, G., Snoek, B. L., van Hoogdalem, M. D., Novák, O., van Verk, M. C., van Kooten, H. N., Zorn, L. E., Tonckens, R., Dongus, J., Praat, M., Stouten, E., Proveniers, M. C. G., Vellutini, E., Patitaki, E., Shapulatov, U., Kohlen, W., Balasubramanian, S., Ljung, K., van der Krol, A. R. & 3 others, Smeekens, S., Kaiserli, E. & van Zanten, M., 25 Nov 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 50, p. 25343-25354

Research output: Contribution to journalArticleAcademicpeer-review

histone deacetylase
auxins
Arabidopsis thaliana
histones
nucleosomes
1 Citation (Scopus)

Induction of desiccation tolerance in desiccation sensitive Citrus limon seeds

Marques, A., Nijveen, H., Somi, C., Ligterink, W. & Hilhorst, H., May 2019, In : Journal of Integrative Plant Biology. 61, 5, p. 624-638

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Citrus limon
Desiccation
Citrus
desiccation (plant physiology)
paclobutrazol

Influência do ambiente de armazenamento na qualidade fisiológica de sementes de milheto (Pennisetum glaucum (L.) R. Br

Translated title of the contribution: Influence of the storage environment on the physiological quality of millet seeds (Pennisetum glaucum (L.) R. Br.)da Silva, G. H., Toledo, M. Z., Teixeira, R. N., Rossi, R. F. & Nakagawa, J., 1 Jul 2019, In : Journal of seed science. 41, 3, p. 286-292 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
millets
Pennisetum glaucum
freezers
refrigerators
seeds
4 Citations (Scopus)
Open Access
Processed foods
Metabolomics
Flavors
Mass spectrometry
Mass Spectrometry
1 Citation (Scopus)

Metabolomics of Thrips Resistance in Pepper (Capsicum spp.) Reveals Monomer and Dimer Acyclic Diterpene Glycosides as Potential Chemical Defenses

Macel, M., Visschers, I. S. G., Peters, J., Kappers, I. F., de Vos, C. H. & van Dam, N. M., Jun 2019, In : Journal of Chemical Ecology. 45, 5-6, p. 490-501 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Thysanoptera
Thrips (Thripidae)
Capsicum
thrips
Metabolomics

Microbial production of short and medium chain esters: Enzymes, pathways, and applications

Kruis, A. J., Bohnenkamp, A. C., Patinios, C., van Nuland, Y. M., Levisson, M., Mars, A. E., van den Berg, C., Kengen, S. W. M. & Weusthuis, R. A., 15 Nov 2019, In : Biotechnology Advances. 37, 7, 107407.

Research output: Contribution to journalArticleAcademicpeer-review

Esters
Enzymes
Alcohols
Acyltransferases
Acyl Coenzyme A
6 Citations (Scopus)

NADP-MALIC ENZYME 1 Affects Germination after Seed Storage in Arabidopsis thaliana

Yazdanpanah, F., Maurino, V., Buijs, G., Karimi Jashni, M., Willems, L. A. J., Sergeeva, L., Rajjou, L., Hilhorst, H. W. M. & Bentsink, L., 1 Feb 2019, In : Plant and Cell Physiology. 60, 2, p. 318–328

Research output: Contribution to journalArticleAcademicpeer-review

seed storage
Germination
NADP
Arabidopsis
NADP (coenzyme)
1 Citation (Scopus)

Phytochrome a protects tomato plants from injuries induced by continuous light

Velez-Ramirez, A. I., Vreugdenhil, D., Millenaar, F. F. & van Ieperen, W., 30 Jan 2019, In : Frontiers in Plant Science. 10, 19.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
phytochrome
tomatoes
photoreceptors
far-red light
growth and development
1 Citation (Scopus)

Plant AP180 N-Terminal Homolog Proteins Are Involved in Clathrin-Dependent Endocytosis during Pollen Tube Growth in Arabidopsis thaliana

Kaneda, M., van Oostende-Triplet, C., Chebli, Y., Testerink, C., Bednarek, S. Y. & Geitmann, A., 1 Jun 2019, In : Plant & cell physiology. 60, 6, p. 1316-1330 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Pollen Tube
clathrin
Clathrin
endocytosis
Endocytosis

Plant cell wall integrity maintenance in model plants and crop species-relevant cell wall components and underlying guiding principles

Gigli-Bisceglia, N., Engelsdorf, T. & Hamann, T., 28 Nov 2019, In : Cellular and Molecular Life Sciences.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Plant Cells
Cellular Structures
Cell Wall
Maintenance
Embryophyta

Plant host and drought shape the root associated fungal microbiota in rice

Andreo-Jimenez, B., Vandenkoornhuyse, P., Lê Van, A., Heutinck, A., Duhamel, M., Kadam, N., Jagadish, K., Ruyter-Spira, C. & Bouwmeester, H., 11 Sep 2019, In : PeerJ. 2019, 9, e7463.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Drought
Droughts
host plants
drought
rice

Quantitative trait loci analysis of hormone levels in Arabidopsis roots

Lee, S., Sergeeva, L. I. & Vreugdenhil, D., 28 Jun 2019, In : PLoS ONE. 14, 6, e0219008.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cytokinins
Quantitative Trait Loci
Arabidopsis
quantitative trait loci
hormones

Root architecture system of oilseed species from the Jatropha genus during seed development and germination

de Brito, C. D., Loureiro, M. B., Ribeiro, P. R., Vasconcelos, P. C. T., Moreno, M. L. V., Fernandez, L. G., Hilhorst, H. W. M., van Lammeren, A., Ligterink, W. & de Castro, R. D., 1 Nov 2019, In : Industrial Crops and Products. 139, 111514.

Research output: Contribution to journalArticleAcademicpeer-review

Jatropha
oilseeds
seed development
seed germination
embryo (plant)

Seed maturation and post-harvest ripening negatively affect arabidopsis somatic embryogenesis

Wu, H., Chen, B., Fiers, M., Wróbel-Marek, J., Kodde, J., Groot, S. P. C., Angenent, G., Feng, H., Bentsink, L. & Boutilier, K., Oct 2019, In : Plant Cell, Tissue and Organ Culture. 139, 1, p. 17-27

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
seed maturation
somatic embryogenesis
ripening
Arabidopsis
embryo (plant)
3 Citations (Scopus)

Seeds: A Unique System to Study Translational Regulation

Sajeev, N., Bai, B. & Bentsink, L., Jun 2019, In : Trends in Plant Science. 24, 6, p. 487-495

Research output: Contribution to journalArticleAcademicpeer-review

translation (genetics)
seeds
imbibition
seed germination
genes
3 Citations (Scopus)

Soil Salinity Limits Plant Shade Avoidance

Hayes, S., Pantazopoulou, C. K., van Gelderen, K., Reinen, E., Tween, A. L., Sharma, A., de Vries, M., Prat, S., Schuurink, R. C., Testerink, C. & Pierik, R., 20 May 2019, In : Current Biology. 29, 10, p. 1669-1676.e4

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Brassinosteroids
brassinosteroids
Salinity
soil salinity
shade

Structural Plasticity of Intrinsically Disordered LEA Proteins from Xerophyta schlechteri Provides Protection In Vitro and In Vivo

Silva Artur, M. A., Rienstra, J., Dennis, T. J., Farrant, J. M., Ligterink, W. & Hilhorst, H., 10 Oct 2019, In : Frontiers in Plant Science. 10, 1272.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
embryogenesis
proteins
salt stress
protein engineering
circular dichroism spectroscopy
3 Citations (Scopus)

Substrate promiscuity of enzymes from the sesquiterpene biosynthetic pathways from Artemisia annua and Tanacetum parthenium allows for novel combinatorial sesquiterpene production

Beyraghdar Kashkooli, A., van der Krol, A. R., Rabe, P., Dickschat, J. S. & Bouwmeester, H., 1 Jul 2019, In : Metabolic Engineering. 54, p. 12-23

Research output: Contribution to journalArticleAcademicpeer-review

Tanacetum parthenium
Artemisia annua
Terpenes
Metabolic engineering
Metabolic Engineering
Open Access
Calcium
DNA
Calcium-Sensing Receptors
Proteins
Oligonucleotide Array Sequence Analysis

The interaction between genotype and maternal nutritional environments affects tomato seed and seedling quality

Geshnizjani, N., Sarikhani Khorami, S., Willems, L. A. J., Snoek, B. L., Hilhorst, H. W. M. & Ligterink, W., 9 May 2019, In : Journal of Experimental Botany. 70, 10, p. 2905-2918 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Lycopersicon esculentum
Seedlings
Seeds
Genotype
Mothers

The Metabolomics Society—Current State of the Membership and Future Directions

Zanetti, K. A., Hall, R. D., Griffin, J. L., Putri, S., Salek, R. M., Styczynski, M. P., Tugizimana, F. & van der Hooft, J. J. J., 3 May 2019, In : Metabolites. 9, 89.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Metabolomics
Postal Service
Social Media
Surveys and Questionnaires
Direction compound
1 Citation (Scopus)

Tissue specific expression and genomic organization of bitter sesquiterpene lactone biosynthesis in Cichorium intybus L. (Asteraceae)

Bogdanovic, M., Cankar, K., Todorovic, S., Dragicevic, M., Simonovic, A., van Houwelingen, A. M. M. L., Schijlen, E. G. W. M., Schipper, A., Gagneul, D., Hendriks, T., Quillet, M-C., Bouwmeester, H. J., Bosch, H. J. & Beekwilder, M. J., Mar 2019, In : Industrial Crops and Products. 129, p. 253-260

Research output: Contribution to journalArticleAcademicpeer-review

Cichorium intybus
chicory
sesquiterpenoid lactones
Asteraceae
biosynthesis
2 Citations (Scopus)

Toward developing a yeast cell factory for the production of prenylated flavonoids

Levisson, M., Araya-Cloutier, C., De Bruijn, W. J. C., Van Der Heide, M., Salvador López, J. M., Daran, J. M., Vincken, J. P. & Beekwilder, J., 24 Apr 2019, In : Journal of Agricultural and Food Chemistry. 67, 49, p. 13478-13486

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
factories
Flavonoids
Yeast
Industrial plants
flavonoids

Tuber-Specific Expression of Two Gibberellin Oxidase Transgenes from Arabidopsis Regulates over Wide Ranges the Potato Tuber Formation

Kolachevskaya, O. O., Lomin, S. N., Kojima, M., Getman, I. A., Sergeeva, L., Sakakibara, H. & Romanov, G. A., Nov 2019, In : Russian Journal of Plant Physiology. 66, 6, p. 984-991

Research output: Contribution to journalArticleAcademicpeer-review

gibberellins
transgenes
tubers
Arabidopsis
potatoes

Viability of recalcitrant Araucaria angustifolia seeds in storage and in a soil seed bank

Gasparin, E., Faria, J. M. R., José, A. C., Tonetti, O. A. O., de Melo, R. A. & Hilhorst, H. W. M., 28 Jun 2019, In : Journal of Forestry Research.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Araucaria angustifolia
seed storage
seed bank
buried seeds
viability
2018
7 Citations (Scopus)

Abscisic acid influences tillering by modulation of strigolactones in barley

Wang, H., Chen, W., Eggert, K., Charnikhova, T., Bouwmeester, H., Schweizer, P., Hajirezaei, M. R., Seiler, C., Sreenivasulu, N., von Wirén, N. & Kuhlmann, M., 18 Jul 2018, In : Journal of Experimental Botany. 69, 16, p. 3883-3898

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Abscisic Acid
Hordeum
tillering
abscisic acid
barley
3 Citations (Scopus)

A disturbed auxin signaling affects adventitious root outgrowth in Solanum dulcamara under complete submergence

Yang, X., Jansen, M. J., Zhang, Q., Sergeeva, L., Ligterink, W., Mariani, C., Rieu, I. & Visser, E. J. W., 1 May 2018, In : Journal of Plant Physiology. 224-225, p. 11-18

Research output: Contribution to journalArticleAcademicpeer-review

Solanum dulcamara
Solanum
Indoleacetic Acids
submergence
adventitious roots
1 Citation (Scopus)

Agrobacterium rhizogenes transformed calli of the holoparasitic plant Phelipanche ramosa maintain parasitic competence

Libiaková, D., Ruyter-Spira, C., Bouwmeester, H. J. & Matusova, R., Oct 2018, In : Plant Cell, Tissue and Organ Culture. 135, 2, p. 321–329

Research output: Contribution to journalArticleAcademicpeer-review

Orobanche ramosa
Rhizobium rhizogenes
callus
parasitic plants
host plants
7 Citations (Scopus)

Arabidopsis phospholipase C3 is involved in lateral root initiation and ABA responses in seed germination and stomatal closure

Zhang, Q., van Wijk, R., Shahbaz, M., Roels, W., Van Schooten, B., Vermeer, J. E. M., Zarza, X., Guardia, A., Scuffi, D., García-Mata, C., Laha, D., Williams, P., Willems, L. A. J., Ligterink, W., Hoffmann-Benning, S., Gillaspy, G., Schaaf, G., Haring, M. A., Laxalt, A. M. & Munnik, T., 1 Mar 2018, In : Plant and Cell Physiology. 59, 3, p. 469-486

Research output: Contribution to journalArticleAcademicpeer-review

Phospholipases
guard cells
Germination
Arabidopsis
Seeds
9 Citations (Scopus)

Arabidopsis WRKY50 and TGA transcription factors synergistically activate expression of PR1

Hussain, R. M. F., Sheikh, A. H., Haider, I., Quareshy, M. & Linthorst, H. J. M., 13 Jul 2018, In : Frontiers in Plant Science. 9, 930.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
binding sites
transcription factors
promoter regions
Arabidopsis
salicylic acid
3 Citations (Scopus)

Characterization of and genetic variation for tomato seed thermo-inhibition and thermo-dormancy

Geshnizjani, N., Ghaderifar, F., Willems, L. A. J., Hilhorst, H. W. M. & Ligterink, W., 11 Oct 2018, In : BMC Plant Biology. 18, 229.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
dormancy
tomatoes
genetic variation
seeds
temperature
1 Citation (Scopus)

Characterization of the superoxide dismutase gene family in seeds of two Ricinus communis L. genotypes submitted to germination under water restriction conditions

Gomes Neto, V., Ribeiro, P. R., Del-Bem, L. E., Bernal, D. T., Cunha Lima, S. T., Ligterink, W., Fernandez, L. G. & de Castro, R. D., 1 Nov 2018, In : Environmental and Experimental Botany. 155, p. 453-463

Research output: Contribution to journalArticleAcademicpeer-review

Ricinus communis
germination
superoxide dismutase
genotype
seed
9 Citations (Scopus)

Combined transcriptome and translatome analyses reveal a role for tryptophan-dependent auxin biosynthesis in the control of DOG1-dependent seed dormancy

Bai, B., Novák, O., Ljung, K., Hanson, J. & Bentsink, L., Feb 2018, In : New Phytologist. 217, 3, p. 1077-1085

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Plant Dormancy
Indoleacetic Acids
seed dormancy
Gene Expression Profiling
transcriptome
3 Citations (Scopus)

Core features of the hormonal status in in vitro grown potato plants

Kolachevskaya, O. O., Sergeeva, L., Getman, I. A., Lomin, S. N., Savelieva, E. M. & Romanov, G. A., 26 Jun 2018, In : Plant Signaling & Behavior. 13, 5, e1467697.

Research output: Contribution to journalArticleAcademicpeer-review

potatoes
auxins
salicylic acids
Agrobacterium
gibberellins