Laboratory of Phytopathology

Search results

• Profile hidden Markov models trained on aligned KEGG Orthology sequences for enzyme annotation

  Rodenburg, Y. A. (Creator), de Ridder, D. (Contributor), Govers, F. (Contributor) & Seidl, M. F. (Creator), Wageningen University & Research, 7 Oct 2019

  DOI: 10.4121/uuid:9b6e6aa0-b815-409f-9e96-04828b03290b

  Dataset

• Fungi internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence

  Liu, Y. (Creator), Zachow, C. (Creator), Raaijmakers, J. M. (Creator) & De Bruijn, I. (Creator), NIOO-KNAW, 3 Feb 2016

  https://www.ncbi.nlm.nih.gov/popset/984291244

  Dataset

• Trichoderma viride translation elongation factor 1 alpha-like gene, partial sequence

  Liu, Y. (Creator), Zachow, C. (Creator), Raaijmakers, J. M. (Creator) & De Bruijn, I. (Creator), NIOO-KNAW, 3 Feb 2016

  https://www.ncbi.nlm.nih.gov/popset/984291264

  Dataset

• leotiomyceta 28S ribosomal RNA gene, partial sequence

  Moreno-Rico, O. (Creator), Groenewald, J. Z. (Creator) & Crous, P. (Creator), CBS Fungal Biodiversity Centre, 27 Mar 2014

  https://www.ncbi.nlm.nih.gov/popset/597518323

  Dataset

• Ramularia 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence

  Videira, S. I. R. (Creator), Groenewald, J. Z. (Creator), Kolecka, A. (Creator), van Haren, L. (Creator), Boekhout, T. (Creator) & Crous, P. (Creator), CBS Fungal Biodiversity Centre, 1 Dec 2016

  https://www.ncbi.nlm.nih.gov/popset/610723263

  Dataset

• Ramularia glyceraldehyde-3-phosphate dehydrogenase gene, partial cds

  Videira, S. I. R. (Creator), Groenewald, J. Z. (Creator), Kolecka, A. (Creator), van Haren, L. (Creator), Boekhout, T. (Creator) & Crous, P. (Creator), CBS Fungal Biodiversity Centre, 4 Oct 2016

  https://www.ncbi.nlm.nih.gov/popset/610722870

  Dataset

• Ramularia calmodulin (cmdA) gene, partial cds

  Videira, S. I. R. (Creator), Groenewald, J. Z. (Creator), Kolecka, A. (Creator), van Haren, L. (Creator), Boekhout, T. (Creator) & Crous, P. (Creator), CBS Fungal Biodiversity Centre, 4 Oct 2016

  https://www.ncbi.nlm.nih.gov/popset/610722766

  Dataset

• Ramularia actin (act) gene, partial cds

  Videira, S. I. R. (Creator), Groenewald, J. Z. (Creator), Kolecka, A. (Creator), van Haren, L. (Creator), Boekhout, T. (Creator) & Crous, P. (Creator), CBS Fungal Biodiversity Centre, 5 Oct 2016

  https://www.ncbi.nlm.nih.gov/popset/610722632

  Dataset

• Ramularia histone H3 (his) gene, partial cds

  Videira, S. I. R. (Creator), Groenewald, J. Z. (Creator), Kolecka, A. (Creator), van Haren, L. (Creator), Boekhout, T. (Creator) & Crous, P. (Creator), CBS Fungal Biodiversity Centre, 4 Oct 2016

  https://www.ncbi.nlm.nih.gov/popset/610722958

  Dataset

• Ramularia chitin synthase-1 (chs-1) gene, partial cds

  Videira, S. I. R. (Creator), Groenewald, J. Z. (Creator), Kolecka, A. (Creator), van Haren, L. (Creator), Boekhout, T. (Creator) & Crous, P. (Creator), CBS Fungal Biodiversity Centre, 4 Oct 2016

  https://www.ncbi.nlm.nih.gov/popset/610722834

  Dataset

• Apiosporaceae 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence

  Crous, P. (Creator) & Groenewald, J. Z. (Creator), CBS Fungal Biodiversity Centre, 28 Dec 2017

  https://www.ncbi.nlm.nih.gov/popset/511343082

  Dataset

• Actinomycetia 16S ribosomal RNA gene, partial sequence

  Liu, Y. (Creator), de Bruijn, I. (Creator), Jack, A. L. H. (Creator), Drynan, K. (Creator), van den Berg, A. H. (Creator), Thoen, E. (Creator), Sandoval-Sierra, V. (Creator), Skaar, I. (Creator), van West, P. (Creator), Diéguez-Uribeondo, J. (Creator), van der Voort, M. (Creator), Mendez, R. (Creator), Mazzola, M. (Creator) & Raaijmakers, J. M. (Creator), Wageningen University & Research, 1 Oct 2014

  https://www.ncbi.nlm.nih.gov/popset/573529752

  Dataset

• Pezizomycotina 28S ribosomal RNA gene, partial sequence

  Hernández-Restrepo, M. (Creator), Groenewald, J. Z. (Creator) & Crous, P. (Creator), CBS Fungal Biodiversity Centre, 12 Dec 2018

  https://www.ncbi.nlm.nih.gov/popset/924425158

  Dataset

• Microdochium beta-tubulin (tub2) gene, partial cds

  Hernández-Restrepo, M. (Creator), Groenewald, J. Z. (Creator) & Crous, P. (Creator), CBS Fungal Biodiversity Centre, 12 Dec 2018

  https://www.ncbi.nlm.nih.gov/popset/924425296

  Dataset

• unclassified Streptomyces ATP synthase beta subunit (atpD) gene, partial cds

  Cordovez da Cunha, V. (Creator), Carrion Bravo, V. J. (Creator), Etalo, D. W. (Creator), Mumm, R. (Creator), Zhu, H. (Creator), van Wezel, G. P. (Creator) & Raaijmakers, J. M. (Creator), Wageningen University & Research, 30 Apr 2020

  https://www.ncbi.nlm.nih.gov/popset/944203324

  Dataset

• Population studies of the wild tomato species Solanum chilense reveal geographically structured major gene-mediated pathogen resistance

  Kahlon, P. S. (Creator), Seta, S. M. (Creator), Zander, G. (Creator), Scheikl, D. (Creator), Hückelhoven, R. (Creator), Joosten, M. (Creator) & Stam, R. (Creator), 16 Dec 2020

  DOI: 10.5061/dryad.866t1g1p9

  Dataset

• Supplemental data for deciphering resistance to Zymoseptoria tritici in the Tunisian durum wheat landrace accession ‘Agili39’

  Ferjaoui, S. (Creator), Aouini, L. (Creator), Slimane, R. B. (Creator), Ammar, K. (Creator), Dreisigacker, S. (Creator), Schouten, H. (Creator), Sapkota, S. (Creator), Bahri, B. A. (Creator), Ben M’Barek, S. (Creator), Visser, R. (Creator), Kema, G. (Creator) & Hamza, S. (Creator), International maize and wheat improvement centre (CIMMYT), 30 Sept 2021

  https://hdl.handle.net/11529/10548618

  Dataset

• Verticillium longisporum strain:VLB2 | isolate:VLB2 Raw sequence reads

  Depotter, J. R. L. (Creator), Seidl, M. F. (Creator), van den Berg-Velthuis, G. (Creator), Thomma, B. (Creator) & Wood, T. A. (Creator), Wageningen University & Research, 28 Mar 2017

  https://www.ncbi.nlm.nih.gov/bioproject/380745

  Dataset

• Verticillium tricorpus MUCL 9792 Genome sequencing and assembly

  Seidl, M. F. (Creator), Faino, L. (Creator), Shi, X. (Creator), van den Berg-Velthuis, G. (Creator), Bolton, M. D. (Creator) & Thomma, B. (Creator), Wageningen University & Research, 21 Jul 2014

  https://www.ncbi.nlm.nih.gov/bioproject/229139

  Dataset

• Verticillium longisporum isolate:VL20 Raw sequence reads

  Depotter, J. R. L. (Creator), Seidl, M. F. (Creator), van den Berg-Velthuis, G. (Creator), Thomma, B. (Creator) & Wood, T. A. (Creator), Wageningen University & Research, 28 Mar 2017

  https://www.ncbi.nlm.nih.gov/bioproject/380746

  Dataset

• Comparative genomics including the basal pathogen Peronospora belbahrii reveal common evolutionary patterns and the monophyly of downy mildews in a paraphyletic Phytophthora

  Thines, M. (Creator), Sharma, R. (Creator), Rodenburg, Y. A. (Creator), Gogleva, A. (Creator), Judelson, H. S. (Creator), Xia, X. (Creator), van den Hoogen, D. J. (Creator), Kitner, M. (Creator), Klein, J. (Creator), de Ridder, D. (Creator), Seidl, M. F. (Creator), van den Ackerveken, G. (Creator), Govers, F. (Creator), Schornack, S. (Creator) & Studholme, D. J. (Creator), 10 Aug 2018

  https://www.ebi.ac.uk/ena/browser/view/PRJEB15119

  Dataset

• Verticillium dahliae 85S

  Depotter, J. R. L. (Creator), Shi, X. (Creator), Missonnier, H. (Creator), Liu, T. (Creator), Faino, L. (Creator), van den Berg-Velthuis, G. (Creator), Wood, T. A. (Creator), Zhang, B. (Creator), Jacques, A. (Creator), Seidl, M. F. (Creator) & Thomma, B. (Creator), Wageningen University & Research, 5 Feb 2018

  https://www.ncbi.nlm.nih.gov/bioproject/432891

  Dataset

• Botryosphaeriaceae elongation factor 1 alpha (tef1) gene, partial cds

  Trakunyingcharoen, T. (Creator), Lombard, L. (Creator), Groenewald, J. Z. (Creator), Cheewangkoon, R. (Creator), To-Anun, C. (Creator) & Crous, P. (Creator), ChiangMai University Thailand, 31 Jan 2015

  https://www.ncbi.nlm.nih.gov/popset/751090579

  Dataset

• Stachybotryaceae 28S ribosomal RNA gene, partial sequence

  Lombard, L. (Creator), Houbraken, J. (Creator), Decock, C. (Creator), Samson, R. A. (Creator), Meijer, M. (Creator), Réblová, M. (Creator), Groenewald, J. Z. (Creator) & Crous, P. (Creator), CBS Fungal Biodiversity Centre, 8 Jul 2016

  https://www.ncbi.nlm.nih.gov/popset/1041787500

  Dataset

• Stachybotryaceae beta-tubulin (tub2) gene, partial cds

  Lombard, L. (Creator), Houbraken, J. (Creator), Decock, C. (Creator), Samson, R. A. (Creator), Meijer, M. (Creator), Réblová, M. (Creator), Groenewald, J. Z. (Creator) & Crous, P. (Creator), CBS Fungal Biodiversity Centre, 8 Jul 2016

  https://www.ncbi.nlm.nih.gov/popset/1041787602

  Dataset