Research Output 1951 2020

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2020

Nonlinear responses of soil nematode community composition to increasing aridity

Xiong, D., Wei, C. Z., Wubs, J. E. R., Veen, G. J., Liang, W., Wang, X., Li, Q., Van der Putten, W. H. & Han, X., Jan 2020, In : Global Ecology and Biogeography. 29, 1, p. 117-126

Research output: Contribution to journalArticleAcademicpeer-review

soil nematodes
dry environmental conditions
aridity
community composition
nematode
1 Citation (Scopus)

Rhizosphere and litter feedbacks to range-expanding plant species and related natives

Manrubia, M., van der Putten, W. H., Weser, C. & Veen, C. G. F., Jan 2020, In : Journal of Ecology. 108, 1, p. 353-365

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
rhizosphere
litter
soil
decomposition
degradation

Shifts in the Active Rhizobiome Paralleling Low Meloidogyne chitwoodi Densities in Fields Under Prolonged Organic Soil Management

Harkes, P., Van Steenbrugge, J. J. M., Van Den Elsen, S. J. J., Suleiman, A. K. A., De Haan, J. J., Holterman, M. H. M. & Helder, J., 10 Jan 2020, In : Frontiers in Plant Science. 10, 14 p., 1697.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Meloidogyne chitwoodi
soil management
organic soils
bacterial communities
ribosomal DNA

The effector GpRbp-1 of Globodera pallida targets a nuclear HECT E3 ubiquitin ligase to modulate gene expression in the host

Diaz-Granados, A., Sterken, M. G., Overmars, H., Ariaans, R., Holterman, M., Pokhare, S. S., Yuan, Y., Pomp, R., Finkers-Tomczak, A., Roosien, J., Slootweg, E., Elashry, A., Grundler, F. M. W., Xiao, F., Goverse, A. & Smant, G., Jan 2020, In : Molecular Plant Pathology. 21, 1, p. 66-82

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Globodera pallida
ubiquitin-protein ligase
Ubiquitin-Protein Ligases
cyst nematodes
Solanum tuberosum

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans

Snoek, B. L., Sterken, M. G., Hartanto, M., Van Zuilichem, A-J., Kammenga, J. E., De Ridder, D. & Nijveen, H., 21 Jan 2020, In : Database : the Journal of Biological Databases and Curation. 2020, baz149.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Quantitative Trait Loci
Caenorhabditis elegans
Gene expression
quantitative trait loci
Genes
2019
3 Citations (Scopus)

A coevolved EDS1-SAG101-NRG1 module mediates cell death signaling by TIR-domain immune receptors

Lapin, D., Kovacova, V., Sun, X., Dongus, J., Bhandari, D., von Born, P., Bautor, J., Guarneri, N., Rzemieniewski, J., Stuttmann, J., Beyer, A. & Parker, J. E., Oct 2019, In : The Plant Cell. 31, p. 2430-2455

Research output: Contribution to journalArticleAcademicpeer-review

cell death
Cell Death
phytoalexins
receptors
Immunity

A Conceptual Framework for Range-Expanding Species that Track Human-Induced Environmental Change

Essl, F., Dullinger, S., Genovesi, P., Hulme, P. E., Jeschke, J. M., Katsanevakis, S., Kühn, I., Lenzner, B., Pauchard, A., Pyšek, P., Rabitsch, W., Richardson, D. M., Seebens, H., Van Kleunen, M., Van Der Putten, W. H., Vilà, M. & Bacher, S., 1 Nov 2019, In : Bioscience. 69, 11, p. 908-919 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Biodiversity
biodiversity
global change

Addiction systems antagonize bacterial adaptive immunity

van Sluijs, L., van Houte, S., van der Oost, J., Brouns, S. J. J., Buckling, A. & Westra, E. R., 1 Mar 2019, In : FEMS Microbiology Letters. 366, 5, fnz047.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Adaptive Immunity
Plasmids
CRISPR-Cas Systems
Clustered Regularly Interspaced Short Palindromic Repeats
Microbial Drug Resistance
2 Citations (Scopus)

A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits

Snoek, B. L., Volkers, J. M., Nijveen, H., Petersen, C., Dirksen, P., Sterken, M. G., Nakad, R., Riksen, J. A. G., Rosenstiel, P. C., Stastna, J. J., Braekman, B. P., Harvey, S. C., Schulenburg, H. & Kammenga, J. E., 12 Mar 2019, In : BMC Biology. 17, 17 p., 24.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
life history trait
inbred lines
quantitative trait loci
genotype
life history

Applying the aboveground-belowground interaction concept in agriculture: Spatio-temporal scales matter

Veen, G. F., Jasper Wubs, E. R., Bardgett, R. D., Barrios, E., Bradford, M. A., Carvalho, S., De Deyn, G. B., de Vries, F. T., Giller, K. E., Kleijn, D., Landis, D. A., Rossing, W. A. H., Schrama, M., Six, J., Struik, P. C., van Gils, S., Wiskerke, J. S. C., van der Putten, W. H. & Vet, L. E. M., 14 Aug 2019, In : Frontiers in Ecology and Evolution. 7, AUG, 300.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
agriculture
organisms
pollinators
pollinator
soil-plant interactions

Attraction of mosquitoes to primate odours and implications for zoonotic Plasmodium transmission

Bakker, J. W., Loy, D. E., Takken, W., Hahn, B. H. & Verhulst, N. O., 17 Aug 2019, In : Medical and Veterinary Entomology.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Plasmodium
Zoonoses
Culicidae
mosquito
primate

A Worm's World: Ecological Flexibility Pays Off for Free-Living Nematodes in Sediments and Soils

Schratzberger, M., Holterman, M., van Oevelen, D. & Helder, J., 4 Sep 2019, In : Bioscience. 9, biz086.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
free-living nematodes
Soil
sediments
Ecosystem
soil
2 Citations (Scopus)

Belowground consequences of intracontinental range-expanding plants and related natives in novel environments

Manrubia, M., Snoek, L. B., Weser, C., Veen, G. F. & Van Der Putten, W. H., 18 Mar 2019, In : Frontiers in Microbiology. 10, MAR, 505.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Population Groups
Soil
Food
Rhizosphere
Climate

Bodembiologie in het natuurbeheer: Nieuwe inzichten en perspectieven

Gerrits, G. & van der Putten, W. H., Jun 2019, In : Vakblad Natuur Bos Landschap. 156, p. 3-7

Research output: Contribution to journalArticleProfessional

Open Access
1 Citation (Scopus)

Challenges and Opportunities for Soil Biodiversity in the Anthropocene

Geisen, S., Wall, D. H. & van der Putten, W. H., 7 Oct 2019, In : Current Biology. 29, 19, p. R1036-R1044

Research output: Contribution to journalArticleAcademicpeer-review

Biodiversity
Soil
biodiversity
Soils
ecosystem services
1 Citation (Scopus)

Climate change effects on plant-soil feedbacks and consequences for biodiversity and functioning of terrestrial ecosystems

Pugnaire, F. I., Morillo, J. A., Peñuelas, J., Reich, P. B., Bardgett, R. D., Gaxiola, A., Wardle, D. A. & Van Der Putten, W. H., 27 Nov 2019, In : Science Advances. 5, 11, eaaz1834.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
biological diversity
ecosystems
climate change
soils
climate

Competition and predation as possible causes of bacterial rarity

Kurm, V., van der Putten, W. H., Weidner, S., Geisen, S., Snoek, B. L., Bakx, T. & Gera Hol, W. H., 1 Apr 2019, In : Environmental Microbiology. 21, 4, p. 1356-1368

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
rarity
predation
Food
Soil
resource availability

Conventional and organic soil management as divergent drivers of resident and active fractions of major soil food web constituents

Harkes, P., Suleiman, A. K. A., van den Elsen, S. J. J., de Haan, J. J., Holterman, M., Kuramae, E. E. & Helder, J., 18 Sep 2019, In : Scientific Reports. 9, 1, 13521.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Food Chain
Soil
Carbon Cycle
Biodiversity
Fertilizers
1 Citation (Scopus)

Cultivation-success of rare soil bacteria is not influenced by incubation time and growth medium

Kurm, V., Van Der Putten, W. H. & Hol, W. H. G., 10 Jan 2019, In : PLoS ONE. 14, 1, e0210073.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
soil bacteria
Bacteria
Soil
culture media
Soils
1 Citation (Scopus)

Distinct roles for strigolactones in cyst nematode parasitism of Arabidopsis roots

Escudero Martinez, C. M., Guarneri, N., Overmars, H., van Schaik, C., Bouwmeester, H., Ruyter-spira, C. & Goverse, A., May 2019, In : European Journal of Plant Pathology. 154, 1, p. 129-140

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
cyst nematodes
parasitism
Arabidopsis
plant hormones
mutants

Does topsoil removal in grassland restoration benefit both soil nematode and plant communities?

Resch, M. C., Schütz, M., Graf, U., Wagenaar, R., Putten, W. H. & Risch, A. C., Jul 2019, In : Journal of Applied Ecology. 56, 7, p. 1782-1793

Research output: Contribution to journalArticleAcademicpeer-review

topsoil
nematode
plant community
grassland
soil
3 Citations (Scopus)

Do strategic delta plans get implemented? The case of the Mekong Delta Plan

Seijger, C., Hoang, V. T. M., van Halsema, G., Douven, W. & Wyatt, A., Apr 2019, In : Regional Environmental Change. 19, 4, p. 1131-1145

Research output: Contribution to journalArticleAcademicpeer-review

plan
agroindustry
planning system
planning process
industrialization
16 Citations (Scopus)

Ecological Intensification: Bridging the Gap between Science and Practice

Kleijn, D., Bommarco, R., Fijen, T. P. M., Garibaldi, L. A., Potts, S. & van der Putten, W. H., 2019, In : Trends in Ecology and Evolution. 34, 2, p. 154-166

Research output: Contribution to journalArticleAcademicpeer-review

food production
pollination
ecosystem service
management practice
farmers

Genetic background modifies phenotypic and transcriptional responses in a C. elegans model of α-synuclein toxicity

Wang, Y. A., Snoek, B. L., Sterken, M. G., Riksen, J. A. G., Stastna, J. J., Kammenga, J. E. & Harvey, S. C., 20 Mar 2019, In : BMC Genomics. 20, 1, 12 p., 232.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Synucleins
Caenorhabditis elegans
Gene Expression
Neurodegenerative Diseases
Phenotype

Het langetermijngeheugen van de zoet-zoutverdeling

de Louw, P., Oude Essink, G., Delsman, J., van Baaren, E. S., America, I. & Engelen, van, J., 2019, In : Stromingen : vakblad voor hydrologen. 25, 1, p. 43-60

Research output: Contribution to journalArticleProfessional

1 Citation (Scopus)

Latitudinal variation in soil nematode communities under climate warming-related range-expanding and native plants

Wilschut, R. A., Geisen, S., Martens, H., Kostenko, O., de Hollander, M., ten Hooven, F. C., Weser, C., Snoek, L. B., Bloem, J., Caković, D., Čelik, T., Koorem, K., Krigas, N., Manrubia, M., Ramirez, K. S., Tsiafouli, M. A., Vreš, B. & van der Putten, W. H., 1 Aug 2019, In : Global Change Biology. 25, 8, p. 2714-2726

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
nematode
warming
Soils
climate
Chemical analysis
2 Citations (Scopus)
Open Access
Tylenchoidea
Meloidogyne incognita
Arabidopsis
ethylene
abiotic stress

Metabarcoding data allow for reliable biomass estimates in the most abundant animals on earth

Schenk, J., Geisen, S., Kleinboelting, N. & Traunspurger, W., 13 Dec 2019, In : Metabarcoding and Metagenomics. 3, e46704.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
nematode
animal
biomass
food web
relative abundance
2 Citations (Scopus)

Microbial invasions in terrestrial ecosystems

Thakur, M. P., van der Putten, W. H., Cobben, M. M. P., van Kleunen, M. & Geisen, S., 26 Jul 2019, In : Nature Reviews Microbiology. p. 1-11 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Ecosystem
Research
Microbial Interactions
Oomycetes
Climate Change

Nematodes as evolutionary commuters between marine, freshwater and terrestrial habitats

Holterman, M., Schratzberger, M. & Helder, J., 12 Sep 2019, In : Biological Journal of the Linnean Society. 128, 3, p. 756-767 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
nematode
Nematoda
habitat
habitats
metazoan

Onderdrukking van Rhizoctonia solani in gangbare en biologische landbouwgronden

van Rijssel, S., Meesters, K., van der Putten, W. H. & Veen, C. G. F., Mar 2019, In : Gewasbescherming. 50, 2, p. 52-52

Research output: Contribution to journalArticleProfessional

Organic amendment strengthens interkingdom associations in the soil and rhizosphere of barley (Hordeum vulgare)

Suleiman, A. K. A., Harkes, P., van den Elsen, S., Holterman, M., Korthals, G. W., Helder, J. & Kuramae, E. E., 10 Dec 2019, In : Science of the Total Environment. 695, 133885.

Research output: Contribution to journalArticleAcademicpeer-review

barley
food web
rhizosphere
Soils
Protozoa
5 Citations (Scopus)

Pollination contribution to crop yield is often context-dependent: A review of experimental evidence

Tamburini, G., Bommarco, R., Kleijn, D., van der Putten, W. H. & Marini, L., 1 Aug 2019, In : Agriculture, Ecosystems and Environment. 280, p. 16-23

Research output: Contribution to journalArticleAcademicpeer-review

pollination
crop yield
crop
crops
pest control

Promoveren op nematodenspeeksel

Verhoeven, A., Oct 2019, In : Gewasbescherming. 50, 5, p. 187-187 1 p.

Research output: Contribution to journalArticleProfessional

4 Citations (Scopus)

Range-expansion effects on the belowground plant microbiome

Ramirez, K. S., Snoek, L. B., Koorem, K., Geisen, S., Bloem, L. J., ten Hooven, F., Kostenko, O., Krigas, N., Manrubia, M., Caković, D., van Raaij, D., Tsiafouli, M. A., Vreš, B., Čelik, T., Weser, C., Wilschut, R. A. & van der Putten, W. H., 25 Mar 2019, In : Nature Ecology and Evolution. 3, 4, p. 604-611

Research output: Contribution to journalArticleAcademicpeer-review

range expansion
native species
microbial community
fungal communities
enemy release hypothesis

Reduced tillage, but not organic matter input, increased nematode diversity and food web stability in European long‐term field experiments

Bongiorno, G., Bodenhausen, N., Bünemann, E. K., Brussaard, L., Geisen, S., Mäder, P., Quist, C. W., Walser, J-C. & de Goede, R. G. M., Nov 2019, In : Molecular Ecology. 28, 22, p. 4987-5005

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Food Chain
reduced tillage
tillage
food webs
nematode
2 Citations (Scopus)

Relationships between fungal community composition in decomposing leaf litter and home-field advantage effects

Veen, G. F., Snoek, B. L., Bakx-Schotman, T., Wardle, D. A. & van der Putten, W. H., Aug 2019, In : Functional Ecology. 33, 8, p. 1524-1535

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
fungal communities
leaf litter
plant litter
community composition
litter
6 Citations (Scopus)

Removal of soil biota alters soil feedback effects on plant growth and defense chemistry

Wang, M., Ruan, W., Kostenko, O., Carvalho, S., Hannula, S. E., Mulder, P. P. J., Bu, F., van der Putten, W. H. & Bezemer, T. M., Feb 2019, In : New Phytologist. 221, 3, p. 1478-1491

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Biota
chemistry
Soil
plant growth
inoculum

Root traits and belowground herbivores relate toplant–soil feedback variation among congeners

Wilschut, R., van der Putten, W. H., Garbeva, P., Harkes, P., Konings, W., Kulkarni, P., Martens, H. J. & Geisen, S., 5 Apr 2019, In : Nature Communications. 10, 1564.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
congeners
Herbivory
Feedback
Microbiota
Biota

Selection and gene flow shape niche-associated variation in pheromone response

Lee, D., Zdraljevic, S., Cook, D. E., Frézal, L., Hsu, J-C., Sterken, M. G., Riksen, J. A. G., Wang, J., Kammenga, J. E., Braendle, C., Félix, M-A., Schroeder, F. C. & Andersen, E. C., 1 Oct 2019, In : Nature Ecology & Evolution. 3, p. 1455-1463

Research output: Contribution to journalArticleAcademicpeer-review

pheromone
pheromones
gene flow
niche
niches

Self-pressurised rapid freezing, a time-efficient and affordable cryo-fixation method for ultrastructural observations on unhatched cyst nematodes

Claeys, M., Handayani, N. D., Yushin, V. V., Lestari, P., Dikin, A., Helder, J. & Bert, W., 5 Sep 2019, In : Nematology. 22, 1, p. 103-110 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

cyst nematodes
cyst
cryopreservation
fixation
nematode
2 Citations (Scopus)

Sensitive detection of pre-integration intermediates of long terminal repeat retrotransposons in crop plants

Cho, J., Benoit, M., Catoni, M., Drost, H. G., Brestovitsky, A., Oosterbeek, M. & Paszkowski, J., 2019, In : Nature Plants. 5, p. 26–33

Research output: Contribution to journalArticleAcademicpeer-review

terminal repeat sequences
retrotransposons
crops
rice
transposons

Soil fauna diversity increases CO2 but suppresses N2O emissions from soil

Lubbers, I. M., Berg, M. P., De Deyn, G. B., van der Putten, W. H. & van Groenigen, J. W., 6 Oct 2019, In : Global Change Biology.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
soil fauna
Soils
soil
Biodiversity
earthworm
1 Citation (Scopus)

Soil functional responses to drought under range-expanding and native plant communities

Manrubia, M., van der Putten, W. H., Weser, C., ten Hooven, F. C., Martens, H., Brinkman, P., Geisen, S., Ramirez, K. S. & Veen, G. F., Dec 2019, In : Functional Ecology. 33, 12, p. 2402-2416

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
functional response
plant community
plant communities
drought
soil
17 Citations (Scopus)

Soil nematode abundance and functional group composition at a global scale

Van Den Hoogen, J., Geisen, S., Routh, D., Ferris, H., Traunspurger, W., Wardle, D. A., De Goede, R. G. M., Adams, B. J., Ahmad, W., Andriuzzi, W. S., Korthals, G., Quist, C. W., Van Der Putten, W. & Wilschut, R., 8 Aug 2019, In : Nature. 572, 7768, p. 194-198

Research output: Contribution to journalArticleAcademicpeer-review

functional group
nematode
subarctic region
soil
soil fertility
1 Citation (Scopus)

Spatial distribution of soil nematodes relates to soil organic matter and life strategy

Quist, C. W., Gort, G., Mooijman, P., Brus, D. J., van den Elsen, S., Kostenko, O., Vervoort, M., Bakker, J., van der Putten, W. H. & Helder, J., 1 Sep 2019, In : Soil Biology and Biochemistry. 136, 107542.

Research output: Contribution to journalArticleAcademicpeer-review

soil nematodes
nematode
soil organic matter
Soil
Nematoda

The hypoxia-response pathway modulates RAS/MAPK–mediated cell fate decisions in Caenorhabditis elegans

Maxeiner, S., Grolleman, J., Schmid, T., Kammenga, J. E. & Hajnal, A., 24 May 2019, In : Life Science Alliance. 2, 3, e201800255.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Caenorhabditis elegans
hypoxia
Oxygen
oxygen
Animals
4 Citations (Scopus)

The potato cyst nematode effector RHA1B is a ubiquitin ligase and uses two distinct mechanisms to suppress plant immune signaling

Kud, J., Wang, W., Gross, R., Fan, Y., Huang, L., Yuan, Y., Gray, A., Duarte, A., Kuhl, J. C., Caplan, A., Goverse, A., Liu, Y., Dandurand, L-M. & Xiao, F., 12 Apr 2019, In : PLoS Pathogens. 15, 4, 18 p., e1007720.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Ligases
Solanum tuberosum
Ubiquitin
Cysts
Immunity

Towards an integrative understanding of soil biodiversity

Thakur, M. P., Phillips, H. R. P., Brose, U., De Vries, F. T., Lavelle, P., Loreau, M., Mathieu, J., Mulder, C., Van der Putten, W. H., Rillig, M. C., Wardle, D. A., Bach, E. M., Bartz, M. L. C., Bennett, J. M., Briones, M. J. I., Brown, G., Decaëns, T., Eisenhauer, N., Ferlian, O., Guerra, C. A. & 7 others, König-Ries, B., Orgiazzi, A., Ramirez, K. S., Russell, D. J., Rutgers, M., Wall, D. H. & Cameron, E. K., 15 Nov 2019, In : Biological Reviews.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Biodiversity
Soil
biodiversity
Soils
soil

Transcriptome resilience predicts thermotolerance in Caenorhabditis elegans

Jovic, K., Grilli, J., Sterken, M. G., Snoek, B. L., Riksen, J. A. G., Allesina, S. & Kammenga, J. E., 10 Dec 2019, In : BMC Biology. 17, 1, 102.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Caenorhabditis elegans
heat tolerance
Transcriptome
transcriptome
heat stress