Research Output

2020

A global database of soil nematode abundance and functional group composition

van den Hoogen, J., Geisen, S., Wall, D. H., Wardle, D. A., Traunspurger, W., de Goede, R. G. M., Adams, B. J., Ahmad, W., Ferris, H., Bardgett, R. D., Bonkowski, M., Campos-Herrera, R., Cares, J. E., Caruso, T., de Brito Caixeta, L., Chen, X., Costa, S. R., Creamer, R., da Cunha e Castro, J. M., Dam, M. & 54 others, Djigal, D., Escuer, M., Griffiths, B. S., Gutiérrez, C., Hohberg, K., Kalinkina, D., Kardol, P., Kergunteuil, A., Korthals, G., Krashevska, V., Kudrin, A. A., Li, Q., Liang, W., Magilton, M., Marais, M., Martín, J. A. R., Matveeva, E., Mayad, E. H., Mzough, E., Mulder, C., Mullin, P., Neilson, R., Nguyen, D. T. A., Nielsen, U. N., Okada, H., Rius, J. E. P., Pan, K., Peneva, V., Pellissier, L., da Silva, J. C. P., Pitteloud, C., Powers, T. O., Powers, K., Quist, C. W., Rasmann, S., Moreno, S. S., Scheu, S., Setälä, H., Sushchuk, A., Tiunov, A. V., Trap, J., Vestergård, M., Villenave, C., Waeyenberge, L., Wilschut, R. A., Wright, D. G., Keith, A. M., Yang, J., Schmidt, O., Bouharroud, R., Ferji, Z., van der Putten, W. H., Routh, D. & Crowther, T. W., 26 Mar 2020, In : Scientific Data. 7, 1, 103.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

A leap towards unravelling the soil microbiome

Harkes, P., 2020, Wageningen: Wageningen University. 222 p.

Research output: Thesisinternal PhD, WU

Attraction of mosquitoes to primate odours and implications for zoonotic Plasmodium transmission

Bakker, J. W., Loy, D. E., Takken, W., Hahn, B. H. & Verhulst, N. O., Mar 2020, In : Medical and Veterinary Entomology. 34, 1, p. 17-26

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Chemical structure predicts the effect of plant‐derived low molecular weight compounds on soil microbiome structure and pathogen suppression

Gu, Y., Wang, X., Yang, T., Friman, V. P., Geisen, S., Wei, Z., Xu, Y., Jousset, A. & Shen, Q., 7 Jul 2020, In : Functional Ecology.

Research output: Contribution to journalArticleAcademicpeer-review

Combining stressors: heat stress and Orsay virus infection in Caenorhabditis elegans

Huang, Y., van Zwet, K., Grashuis, T., Pijlman, G. P. & Kammenga, J. E., 24 Jun 2020.

Research output: Contribution to conferencePosterAcademic

Community-level interactions between plants and soil biota during range expansion

Koorem, K., Snoek, B. L., Bloem, J., Geisen, S., Kostenko, O., Manrubia, M., Ramirez, K. S., Weser, C., Wilschut, R. A. & van der Putten, W. H., 23 Apr 2020, In : Journal of Ecology.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Distinct Biogeographic Phenomena Require a Specific Terminology: A Reply to Wilson and Sagoff

Essl, F., Dullinger, S., Genovesi, P., Hulme, P. E., Jeschke, J. M., Katsanevakis, S., Kühn, I., Lenzner, B., Pauchard, A., Pyšek, P., Rabitsch, W., Richardson, D. M., Seebens, H., Van Kleunen, M., van der Putten, W. H., Vilà, M. & Bacher, S., 1 Feb 2020, In : Bioscience. 70, 2, p. 111-114

Research output: Contribution to journalComment/Letter to the editorAcademic

Effect of light quality on mycorrhizal growth and resistance benefits

Saha, H., 11 Feb 2020.

Research output: Contribution to conferencePosterAcademic

Effect of nitrogen on fungal growth efficiency

Di Lonardo, D. P., van der Wal, A., Harkes, P. & de Boer, W., 1 Jun 2020, In : Plant Biosystems. 154, 4, p. 433-437 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Fertilization changes soil microbiome functioning, especially phagotrophic protists

Zhao, Z. B., He, J. Z., Quan, Z., Wu, C. F., Sheng, R., Zhang, L. M. & Geisen, S., Sep 2020, In : Soil Biology and Biochemistry. 148, 107863.

Research output: Contribution to journalArticleAcademicpeer-review

From Bush Mangoes to Bouillon Cubes: Wild Plants and Diet among the Baka, Forager-Horticulturalists from Southeast Cameroon

Gallois, S., Heger, T., van Andel, T., Sonké, B. & Henry, A. G., Mar 2020, In : Economic Botany. 74, p. 46–58 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Genetic Variation in Caenorhabditis elegans Responses to Pathogenic Microbiota

Huang, Y. & Kammenga, J. E., 24 Apr 2020, In : Microorganisms. 8, 4, 618.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Genetic Variation in Complex Traits in Transgenic α-Synuclein Strains of Caenorhabditis elegans

Wang, Y., van Sluijs, L., Nie, Y., Sterken, M. G., Harvey, S. C. & Kammenga, J. E., 11 Jul 2020, In : Genes. 11, 7, 778.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

LRRpredictor—a new LRR motif detection method for irregular motifs of plant NLR proteins using an ensemble of classifiers

Martin, E. C., Sukarta, O. C. A., Spiridon, L., Grigore, L. G., Constantinescu, V., Tacutu, R., Goverse, A. & Petrescu, A. J., 8 Mar 2020, In : Genes. 11, 3, 286.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Monitoring and tackling genetic selection in the potato cyst nematode Globodera pallida

Grenier, E., Kiewnick, S., Smant, G., Fournet, S., Montarry, J., Holterman, M., Helder, J. & Goverse, A., 12 Jun 2020, In : EFSA Supporting Publications. 17, 6, 23 p.

Research output: Contribution to journalSpecial issueAcademicpeer-review

Open Access

Nonlinear responses of soil nematode community composition to increasing aridity

Xiong, D., Wei, C. Z., Wubs, J. E. R., Veen, G. J., Liang, W., Wang, X., Li, Q., Van der Putten, W. H. & Han, X., Jan 2020, In : Global Ecology and Biogeography. 29, 1, p. 117-126

Research output: Contribution to journalArticleAcademicpeer-review

Orsay virus infection reduces outcrossing behaviour of Caenorhabditis elegans males

van Sluijs, L., Liu, J., Schrama, M., van Hamond, S., Vromans, S., Scholten, M., Žibrat, N., Riksen, J. A. G., Sterken, M. G., Pijlman, G. P. & Kammenga, J. E., 24 Jun 2020.

Research output: Contribution to conferencePosterAcademic

Palaeosols and their cover sediments of a glacial landscape in northern central Europe: Spatial distribution, pedostratigraphy and evidence on landscape evolution

Kaiser, K., Schneider, T., Küster, M., Dietze, E., Fülling, A., Heinrich, S., Kappler, C., Nelle, O., Schult, M., Theuerkauf, M., Vogel, S., de Boer, A. M., Börner, A., Preusser, F., Schwabe, M., Ulrich, J., Wirner, M. & Bens, O., Oct 2020, In : Catena. 193, 104647.

Research output: Contribution to journalArticleAcademicpeer-review

Pilot-scale hybrid constructed wetlands for the treatment of cooling tower water prior to its desalination and reuse

Wagner, T. V., de Wilde, V., Willemsen, B., Mutaqin, M., Putri, G., Opdam, J., Parsons, J. R., Rijnaarts, H. H. M., de Voogt, P. & Langenhoff, A. A. M., 1 Oct 2020, In : Journal of Environmental Management. 271, 110972.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Plant functional group drives the community structure of saprophytic fungi in a grassland biodiversity experiment

Francioli, D., van Rijssel, S. Q., van Ruijven, J., Termorshuizen, A. J., Cotton, A., Dumbrell, A. J., Raaijmakers, J. M., Weigelt, A. & Mommer, L., 19 Feb 2020, In : Plant and Soil.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Rhizosphere and litter feedbacks to range-expanding plant species and related natives

Manrubia, M., van der Putten, W. H., Weser, C. & Veen, C. G. F., Jan 2020, In : Journal of Ecology. 108, 1, p. 353-365

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Rhizosphere immunity: targeting the underground for sustainable plant health management

Wei, Z., Friman, V-P., Pommier, T., Geisen, S., Jousset, A. & Shen, Q., 28 Jul 2020, In : Frontiers of Agricultural Science and Engineering. 7, 3, p. 317-328

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Rhizosphere protists are key determinants of plant health

Xiong, W., Song, Y., Yang, K., Gu, Y., Wei, Z., Kowalchuk, G. A., Xu, Y., Jousset, A., Shen, Q. & Geisen, S., 3 Mar 2020, In : Microbiome. 8, 1, 27.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Shifts in the Active Rhizobiome Paralleling Low Meloidogyne chitwoodi Densities in Fields Under Prolonged Organic Soil Management

Harkes, P., Van Steenbrugge, J. J. M., Van Den Elsen, S. J. J., Suleiman, A. K. A., De Haan, J. J., Holterman, M. H. M. & Helder, J., 10 Jan 2020, In : Frontiers in Plant Science. 10, 14 p., 1697.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Soil fauna diversity increases CO2 but suppresses N2O emissions from soil

Lubbers, I. M., Berg, M. P., De Deyn, G. B., van der Putten, W. H. & van Groenigen, J. W., Mar 2020, In : Global Change Biology. 26, 3, p. 1886-1898

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Temperature-Induced Annual Variation in Microbial Community Changes and Resulting Metabolome Shifts in a Controlled Fermentation System

Wang, S., Xiong, W., Wang, Y., Nie, Y., Wu, Q., Xu, Y. & Geisen, S., 21 Jul 2020, In : mSystems. 5, 4, e00555-20.

Research output: Contribution to journalArticleAcademicpeer-review

The effector GpRbp-1 of Globodera pallida targets a nuclear HECT E3 ubiquitin ligase to modulate gene expression in the host

Diaz-Granados, A., Sterken, M. G., Overmars, H., Ariaans, R., Holterman, M., Pokhare, S. S., Yuan, Y., Pomp, R., Finkers-Tomczak, A., Roosien, J., Slootweg, E., Elashry, A., Grundler, F. M. W., Xiao, F., Goverse, A. & Smant, G., Jan 2020, In : Molecular Plant Pathology. 21, 1, p. 66-82

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

The host-parasite supergenome: an untapped source for disease resistance

Maulana, M., Smant, G., Goverse, A., Kammenga, J. E. & Sterken, M. G., 24 Jun 2020.

Research output: Contribution to conferencePosterAcademic

The long-term restoration of ecosystem complexity

Moreno-Mateos, D., Alberdi, A., Morriën, E., van der Putten, W. H., Rodríguez-Uña, A. & Montoya, D., 1 May 2020, In : Nature Ecology and Evolution. 4, 5, p. 676-685 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)
Open Access

Towards an integrative understanding of soil biodiversity

Thakur, M. P., Phillips, H. R. P., Brose, U., De Vries, F. T., Lavelle, P., Loreau, M., Mathieu, J., Mulder, C., Van der Putten, W. H., Rillig, M. C., Wardle, D. A., Bach, E. M., Bartz, M. L. C., Bennett, J. M., Briones, M. J. I., Brown, G., Decaëns, T., Eisenhauer, N., Ferlian, O., Guerra, C. A. & 7 others, König-Ries, B., Orgiazzi, A., Ramirez, K. S., Russell, D. J., Rutgers, M., Wall, D. H. & Cameron, E. K., Apr 2020, In : Biological Reviews. 95, 2, p. 350-364

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans

Snoek, B. L., Sterken, M. G., Hartanto, M., Van Zuilichem, A-J., Kammenga, J. E., De Ridder, D. & Nijveen, H., 21 Jan 2020, In : Database : the Journal of Biological Databases and Curation. 2020, baz149.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

WormQTL3.0: supporting more paradigms and analyses

Sterken, M. G., Snoek, L. B. & Nijveen, H., 24 Jun 2020.

Research output: Contribution to conferencePosterAcademic

2019

A coevolved EDS1-SAG101-NRG1 module mediates cell death signaling by TIR-domain immune receptors

Lapin, D., Kovacova, V., Sun, X., Dongus, J., Bhandari, D., von Born, P., Bautor, J., Guarneri, N., Rzemieniewski, J., Stuttmann, J., Beyer, A. & Parker, J. E., Oct 2019, In : The Plant Cell. 31, p. 2430-2455

Research output: Contribution to journalArticleAcademicpeer-review

21 Citations (Scopus)

A Conceptual Framework for Range-Expanding Species that Track Human-Induced Environmental Change

Essl, F., Dullinger, S., Genovesi, P., Hulme, P. E., Jeschke, J. M., Katsanevakis, S., Kühn, I., Lenzner, B., Pauchard, A., Pyšek, P., Rabitsch, W., Richardson, D. M., Seebens, H., Van Kleunen, M., Van Der Putten, W. H., Vilà, M. & Bacher, S., 1 Nov 2019, In : Bioscience. 69, 11, p. 908-919 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

12 Citations (Scopus)

Addiction systems antagonize bacterial adaptive immunity

van Sluijs, L., van Houte, S., van der Oost, J., Brouns, S. J. J., Buckling, A. & Westra, E. R., 1 Mar 2019, In : FEMS Microbiology Letters. 366, 5, fnz047.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A Jasmonate Signaling Network Activates Root Stem Cells and Promotes Regeneration

Zhou, W., Lozano-Torres, J. L., Blilou, I., Zhang, X., Zhai, Q., Smant, G., Li, C. & Scheres, B., 2 May 2019, In : Cell. 177, 4, p. 942-956

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
32 Citations (Scopus)

A Jasmonate signalling network activates root stem cells and promotes regeneration

Zhou, W., Lozano Torres, J. L., Blilou, I., Zhang, X., Zhai, Q., Smant, G., Li, C. & Scheres, B. J. G., 18 Jul 2019.

Research output: Contribution to conferencePosterAcademic

A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits

Snoek, B. L., Volkers, J. M., Nijveen, H., Petersen, C., Dirksen, P., Sterken, M. G., Nakad, R., Riksen, J. A. G., Rosenstiel, P. C., Stastna, J. J., Braekman, B. P., Harvey, S. C., Schulenburg, H. & Kammenga, J. E., 12 Mar 2019, In : BMC Biology. 17, 17 p., 24.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Applying the aboveground-belowground interaction concept in agriculture: Spatio-temporal scales matter

Veen, G. F., Jasper Wubs, E. R., Bardgett, R. D., Barrios, E., Bradford, M. A., Carvalho, S., De Deyn, G. B., de Vries, F. T., Giller, K. E., Kleijn, D., Landis, D. A., Rossing, W. A. H., Schrama, M., Six, J., Struik, P. C., van Gils, S., Wiskerke, J. S. C., van der Putten, W. H. & Vet, L. E. M., 14 Aug 2019, In : Frontiers in Ecology and Evolution. 7, AUG, 300.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

A user guide to environmental protistology: primers, metabarcoding, sequencing, and analyses

Geisen, S., Vaulot, D., Mahe, F., Lara, E., de Vargas, C. & Bass, D., 21 Nov 2019, BioRxiv, 34 p.

Research output: Working paperAcademic

A Worm's World: Ecological Flexibility Pays Off for Free-Living Nematodes in Sediments and Soils

Schratzberger, M., Holterman, M., van Oevelen, D. & Helder, J., 4 Sep 2019, In : Bioscience. 9, biz086.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Belowground consequences of intracontinental range-expanding plants and related natives in novel environments

Manrubia, M., Snoek, L. B., Weser, C., Veen, G. F. & Van Der Putten, W. H., 18 Mar 2019, In : Frontiers in Microbiology. 10, MAR, 505.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Bodembiologie in het natuurbeheer: Nieuwe inzichten en perspectieven

Gerrits, G. & van der Putten, W. H., Jun 2019, In : Vakblad Natuur Bos Landschap. 156, p. 3-7

Research output: Contribution to journalArticleProfessional

Open Access

Challenges and Opportunities for Soil Biodiversity in the Anthropocene

Geisen, S., Wall, D. H. & van der Putten, W. H., 7 Oct 2019, In : Current Biology. 29, 19, p. R1036-R1044

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)

Climate change effects on plant-soil feedbacks and consequences for biodiversity and functioning of terrestrial ecosystems

Pugnaire, F. I., Morillo, J. A., Peñuelas, J., Reich, P. B., Bardgett, R. D., Gaxiola, A., Wardle, D. A. & Van Der Putten, W. H., 27 Nov 2019, In : Science Advances. 5, 11, eaaz1834.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)