Research Output 1951 2020

2020

A leap towards unravelling the soil microbiome

Harkes, P., 2020, Wageningen: Wageningen University. 222 p.

Research output: Thesisinternal PhD, WU

Nonlinear responses of soil nematode community composition to increasing aridity

Xiong, D., Wei, C. Z., Wubs, J. E. R., Veen, G. J., Liang, W., Wang, X., Li, Q., Van der Putten, W. H. & Han, X., Jan 2020, In : Global Ecology and Biogeography. 29, 1, p. 117-126

Research output: Contribution to journalArticleAcademicpeer-review

soil nematodes
dry environmental conditions
aridity
community composition
nematode
1 Citation (Scopus)

Rhizosphere and litter feedbacks to range-expanding plant species and related natives

Manrubia, M., van der Putten, W. H., Weser, C. & Veen, C. G. F., Jan 2020, In : Journal of Ecology. 108, 1, p. 353-365

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
rhizosphere
litter
soil
decomposition
degradation

Shifts in the Active Rhizobiome Paralleling Low Meloidogyne chitwoodi Densities in Fields Under Prolonged Organic Soil Management

Harkes, P., Van Steenbrugge, J. J. M., Van Den Elsen, S. J. J., Suleiman, A. K. A., De Haan, J. J., Holterman, M. H. M. & Helder, J., 10 Jan 2020, In : Frontiers in Plant Science. 10, 14 p., 1697.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Meloidogyne chitwoodi
soil management
organic soils
bacterial communities
ribosomal DNA

The effector GpRbp-1 of Globodera pallida targets a nuclear HECT E3 ubiquitin ligase to modulate gene expression in the host

Diaz-Granados, A., Sterken, M. G., Overmars, H., Ariaans, R., Holterman, M., Pokhare, S. S., Yuan, Y., Pomp, R., Finkers-Tomczak, A., Roosien, J., Slootweg, E., Elashry, A., Grundler, F. M. W., Xiao, F., Goverse, A. & Smant, G., Jan 2020, In : Molecular Plant Pathology. 21, 1, p. 66-82

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Globodera pallida
ubiquitin-protein ligase
Ubiquitin-Protein Ligases
cyst nematodes
Solanum tuberosum

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans

Snoek, B. L., Sterken, M. G., Hartanto, M., Van Zuilichem, A-J., Kammenga, J. E., De Ridder, D. & Nijveen, H., 21 Jan 2020, In : Database : the Journal of Biological Databases and Curation. 2020, baz149.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Quantitative Trait Loci
Caenorhabditis elegans
Gene expression
quantitative trait loci
Genes
2019
3 Citations (Scopus)

A coevolved EDS1-SAG101-NRG1 module mediates cell death signaling by TIR-domain immune receptors

Lapin, D., Kovacova, V., Sun, X., Dongus, J., Bhandari, D., von Born, P., Bautor, J., Guarneri, N., Rzemieniewski, J., Stuttmann, J., Beyer, A. & Parker, J. E., Oct 2019, In : The Plant Cell. 31, p. 2430-2455

Research output: Contribution to journalArticleAcademicpeer-review

cell death
Cell Death
phytoalexins
receptors
Immunity

A Conceptual Framework for Range-Expanding Species that Track Human-Induced Environmental Change

Essl, F., Dullinger, S., Genovesi, P., Hulme, P. E., Jeschke, J. M., Katsanevakis, S., Kühn, I., Lenzner, B., Pauchard, A., Pyšek, P., Rabitsch, W., Richardson, D. M., Seebens, H., Van Kleunen, M., Van Der Putten, W. H., Vilà, M. & Bacher, S., 1 Nov 2019, In : Bioscience. 69, 11, p. 908-919 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Biodiversity
biodiversity
global change

Addiction systems antagonize bacterial adaptive immunity

van Sluijs, L., van Houte, S., van der Oost, J., Brouns, S. J. J., Buckling, A. & Westra, E. R., 1 Mar 2019, In : FEMS Microbiology Letters. 366, 5, fnz047.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Adaptive Immunity
Plasmids
CRISPR-Cas Systems
Clustered Regularly Interspaced Short Palindromic Repeats
Microbial Drug Resistance
11 Citations (Scopus)

A Jasmonate Signaling Network Activates Root Stem Cells and Promotes Regeneration

Zhou, W., Lozano-Torres, J. L., Blilou, I., Zhang, X., Zhai, Q., Smant, G., Li, C. & Scheres, B., 2 May 2019, In : Cell. 177, 4, p. 942-956

Research output: Contribution to journalArticleAcademicpeer-review

Stem cells
Regeneration
Stem Cells
Chemical activation
Growth

A Jasmonate signalling network activates root stem cells and promotes regeneration

Zhou, W., Lozano Torres, J. L., Blilou, I., Zhang, X., Zhai, Q., Smant, G., Li, C. & Scheres, B. J. G., 18 Jul 2019.

Research output: Contribution to conferencePosterAcademic

2 Citations (Scopus)

A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits

Snoek, B. L., Volkers, J. M., Nijveen, H., Petersen, C., Dirksen, P., Sterken, M. G., Nakad, R., Riksen, J. A. G., Rosenstiel, P. C., Stastna, J. J., Braekman, B. P., Harvey, S. C., Schulenburg, H. & Kammenga, J. E., 12 Mar 2019, In : BMC Biology. 17, 17 p., 24.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
life history trait
inbred lines
quantitative trait loci
genotype
life history

Applying the aboveground-belowground interaction concept in agriculture: Spatio-temporal scales matter

Veen, G. F., Jasper Wubs, E. R., Bardgett, R. D., Barrios, E., Bradford, M. A., Carvalho, S., De Deyn, G. B., de Vries, F. T., Giller, K. E., Kleijn, D., Landis, D. A., Rossing, W. A. H., Schrama, M., Six, J., Struik, P. C., van Gils, S., Wiskerke, J. S. C., van der Putten, W. H. & Vet, L. E. M., 14 Aug 2019, In : Frontiers in Ecology and Evolution. 7, AUG, 300.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
agriculture
organisms
pollinators
pollinator
soil-plant interactions

Attraction of mosquitoes to primate odours and implications for zoonotic Plasmodium transmission

Bakker, J. W., Loy, D. E., Takken, W., Hahn, B. H. & Verhulst, N. O., 17 Aug 2019, In : Medical and Veterinary Entomology.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Plasmodium
Zoonoses
Culicidae
mosquito
primate

A user guide to environmental protistology: primers, metabarcoding, sequencing, and analyses

Geisen, S., Vaulot, D., Mahe, F., Lara, E., de Vargas, C. & Bass, D., 21 Nov 2019, BioRxiv, 34 p.

Research output: Working paperAcademic

ecosystems
functional diversity
transcriptomics
eukaryotic cells
protists

A Worm's World: Ecological Flexibility Pays Off for Free-Living Nematodes in Sediments and Soils

Schratzberger, M., Holterman, M., van Oevelen, D. & Helder, J., 4 Sep 2019, In : Bioscience. 9, biz086.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
free-living nematodes
Soil
sediments
Ecosystem
soil
Globodera pallida
cyst nematodes
cell death
potatoes
potato protein
2 Citations (Scopus)

Belowground consequences of intracontinental range-expanding plants and related natives in novel environments

Manrubia, M., Snoek, L. B., Weser, C., Veen, G. F. & Van Der Putten, W. H., 18 Mar 2019, In : Frontiers in Microbiology. 10, MAR, 505.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Population Groups
Soil
Food
Rhizosphere
Climate

Bodembiologie in het natuurbeheer: Nieuwe inzichten en perspectieven

Gerrits, G. & van der Putten, W. H., Jun 2019, In : Vakblad Natuur Bos Landschap. 156, p. 3-7

Research output: Contribution to journalArticleProfessional

Open Access
1 Citation (Scopus)

Challenges and Opportunities for Soil Biodiversity in the Anthropocene

Geisen, S., Wall, D. H. & van der Putten, W. H., 7 Oct 2019, In : Current Biology. 29, 19, p. R1036-R1044

Research output: Contribution to journalArticleAcademicpeer-review

Biodiversity
Soil
biodiversity
Soils
ecosystem services
1 Citation (Scopus)

Climate change effects on plant-soil feedbacks and consequences for biodiversity and functioning of terrestrial ecosystems

Pugnaire, F. I., Morillo, J. A., Peñuelas, J., Reich, P. B., Bardgett, R. D., Gaxiola, A., Wardle, D. A. & Van Der Putten, W. H., 27 Nov 2019, In : Science Advances. 5, 11, eaaz1834.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
biological diversity
ecosystems
climate change
soils
climate
Globodera rostochiensis
cyst nematodes
inbred lines
potatoes
genome

Competition and predation as possible causes of bacterial rarity

Kurm, V., van der Putten, W. H., Weidner, S., Geisen, S., Snoek, B. L., Bakx, T. & Gera Hol, W. H., 1 Apr 2019, In : Environmental Microbiology. 21, 4, p. 1356-1368

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
rarity
predation
Food
Soil
resource availability

Conventional and organic soil management as divergent drivers of resident and active fractions of major soil food web constituents

Harkes, P., Suleiman, A. K. A., van den Elsen, S. J. J., de Haan, J. J., Holterman, M., Kuramae, E. E. & Helder, J., 18 Sep 2019, In : Scientific Reports. 9, 1, 13521.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Food Chain
Soil
Carbon Cycle
Biodiversity
Fertilizers

Corrigendum: A Worm's World: Ecological Flexibility Pays off for Free-Living Nematodes in Sediments and Soils

Schratzberger, M., Holterman, M., van Oevelen, D. & Helder, J., Nov 2019, In : Bioscience. 69, 11, 1 p.

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access
free-living nematodes
Manuscripts
Names
Soil
sediments

Cover crops-steered microbiome to promote suppression of soil-borne pathogens

Cazzaniga, S., Braat, L., Helder, J., Postma, J. & Mommer, L., 10 Sep 2019.

Research output: Contribution to conferencePosterAcademic

suppressive soils
cover crops
pathogens
soil
beneficial microorganisms
1 Citation (Scopus)

Cultivation-success of rare soil bacteria is not influenced by incubation time and growth medium

Kurm, V., Van Der Putten, W. H. & Hol, W. H. G., 10 Jan 2019, In : PLoS ONE. 14, 1, e0210073.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
soil bacteria
Bacteria
Soil
culture media
Soils
1 Citation (Scopus)

Distinct roles for strigolactones in cyst nematode parasitism of Arabidopsis roots

Escudero Martinez, C. M., Guarneri, N., Overmars, H., van Schaik, C., Bouwmeester, H., Ruyter-spira, C. & Goverse, A., May 2019, In : European Journal of Plant Pathology. 154, 1, p. 129-140

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
cyst nematodes
parasitism
Arabidopsis
plant hormones
mutants

Does topsoil removal in grassland restoration benefit both soil nematode and plant communities?

Resch, M. C., Schütz, M., Graf, U., Wagenaar, R., Putten, W. H. & Risch, A. C., Jul 2019, In : Journal of Applied Ecology. 56, 7, p. 1782-1793

Research output: Contribution to journalArticleAcademicpeer-review

topsoil
nematode
plant community
grassland
soil
3 Citations (Scopus)

Do strategic delta plans get implemented? The case of the Mekong Delta Plan

Seijger, C., Hoang, V. T. M., van Halsema, G., Douven, W. & Wyatt, A., Apr 2019, In : Regional Environmental Change. 19, 4, p. 1131-1145

Research output: Contribution to journalArticleAcademicpeer-review

plan
agroindustry
planning system
planning process
industrialization

Drought legacy effects on plant soil-feedbacks of range expanders and related natives

Li, K., 12 Feb 2019.

Research output: Contribution to conferencePosterProfessional

Open Access
16 Citations (Scopus)

Ecological Intensification: Bridging the Gap between Science and Practice

Kleijn, D., Bommarco, R., Fijen, T. P. M., Garibaldi, L. A., Potts, S. & van der Putten, W. H., 2019, In : Trends in Ecology and Evolution. 34, 2, p. 154-166

Research output: Contribution to journalArticleAcademicpeer-review

food production
pollination
ecosystem service
management practice
farmers

Epigenetic contribution to phenotypic plasticity and biotic stress-induced memory in Populus nigra

Peña Ponton, C. J. & Verhoeven, K., 20 Aug 2019.

Research output: Contribution to conferencePosterAcademic

Populus nigra
biotic stress
phenotypic plasticity
epigenetics
Melampsora larici-populina

Evolution of hatching stimulant perception in Potato Cyst Nematode

Vlaar, L., Rahimi, M., Rodriguez, A., Helder, J., Goverse, A., Kammenga, J. E. & Bouwmeester, H. J., 8 Apr 2019.

Research output: Contribution to conferencePosterAcademic

Exploring the Role of RanGAP2 in Recognition by the Potato CC-NB-LRR Immune Receptors Rx1 and Gpa2

Sukarta, O. C. A., 18 Jul 2019.

Research output: Contribution to conferenceAbstractAcademic

Open Access
ran GTP-Binding Protein
GTPase-Activating Proteins
Solanum tuberosum
Recognition (Psychology)
Immunoprecipitation

Exploring the Role of RanGTPase Activating Protein 2 (RanGAP2) in Recognition by the Potato CC NB LRR Immune Receptors Rx1 and Gpa2

Sukarta, O. C. A., Slootweg, E. J., Diaz Granados Muñoz, A., Martin, E. C., Roosien, J., Bakker, J., Smant, G., Petrescu, A. & Goverse, A., 18 Jul 2019.

Research output: Contribution to conferencePosterAcademic

Gene expression profile in a C. elegans model of Alpha-Synuclein with variable natural genetic background and their phenotypic variations

Wang, Y. A., Snoek, L. B., Sterken, M. G., Riksen, J. A. G., Stastna, J. J., Kammenga, J. E. & Harvey, S., May 2019.

Research output: Contribution to conferencePosterAcademic

Synucleins
alpha-Synuclein
Transcriptome
Genotype
Genes

Genetic background modifies phenotypic and transcriptional responses in a C. elegans model of α-synuclein toxicity

Wang, Y. A., Snoek, B. L., Sterken, M. G., Riksen, J. A. G., Stastna, J. J., Kammenga, J. E. & Harvey, S. C., 20 Mar 2019, In : BMC Genomics. 20, 1, 12 p., 232.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Synucleins
Caenorhabditis elegans
Gene Expression
Neurodegenerative Diseases
Phenotype

Genetic variation associated with Alpha-synuclein pathology in Caenorhabditis elegans

Wang, Y. A., 2019, Wageningen: Wageningen University. 144 p.

Research output: Thesisinternal PhD, WU

Open Access

Geometric cues forecast the switch from two- to three-dimensional growth in Physcomitrella patens

Tang, H., Duijts, K., Bezanilla, M., Scheres, B., Vermeer, J. E. M. & Willemsen, V., 22 Oct 2019, In : New Phytologist.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Bryopsida
Physcomitrella patens
Cues
gametophores
Growth

Globodera pallida effector GpRbp-1 targets E3 ligase UPL3 to modulate gene expression in the host

Diaz Granados Muñoz, A., Sterken, M. G., Overmars, H. A., Yuan, Y., Ariaans, R., Pomp, H., Pokare, S., Holterman, M. H. M., Slootweg, E. J., Elashry, A., Grundler, F. M. W., Bakker, J., Xie, F., Goverse, A. & Smant, G., 8 Apr 2019.

Research output: Contribution to conferencePosterAcademic

Het langetermijngeheugen van de zoet-zoutverdeling

de Louw, P., Oude Essink, G., Delsman, J., van Baaren, E. S., America, I. & Engelen, van, J., 2019, In : Stromingen : vakblad voor hydrologen. 25, 1, p. 43-60

Research output: Contribution to journalArticleProfessional

Impacts of beekeeping and agroforestry initiatives, Upper Mara River Basin, Kenya

Ingram, V. J., Kirui, R., van Rooij, S. A. M., Hitimana, J. & Koopmans, D., 2019, 4th World Congress on Agroforestry, 20-22 May 2019, Montpellier, France: Book of Abstracts. Dupraz, C., Gosme, M. & Lawson, G. (eds.). p. 533-533

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access
1 Citation (Scopus)

Latitudinal variation in soil nematode communities under climate warming-related range-expanding and native plants

Wilschut, R. A., Geisen, S., Martens, H., Kostenko, O., de Hollander, M., ten Hooven, F. C., Weser, C., Snoek, L. B., Bloem, J., Caković, D., Čelik, T., Koorem, K., Krigas, N., Manrubia, M., Ramirez, K. S., Tsiafouli, M. A., Vreš, B. & van der Putten, W. H., 1 Aug 2019, In : Global Change Biology. 25, 8, p. 2714-2726

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
nematode
warming
Soils
climate
Chemical analysis
soil management
barley
organic soil
rhizosphere
soil biota
2 Citations (Scopus)
Open Access
Tylenchoidea
Meloidogyne incognita
Arabidopsis
ethylene
abiotic stress