Laboratory of Nematology

Search results

• Data from: Drought mitigates negative effects of natural microbiomes in grasses

  Rallo, P. (Creator), Bakx-Schotman, T. (Creator), Kammenga, J. (Creator), van der Putten, W. (Creator), Hannula, S. E. (Creator) & Verhoeven, K. J. F. (Creator), Netherlands Institute of Ecology (NIOO-KNAW), 10 May 2024

  DOI: 10.5281/zenodo.11173682

  Dataset

• Vital Soils Chronosequence of Organic Farming

  Koorneef, G. (Creator) & van Mastrigt-van Rijssel, S. (Creator), Netherlands Institute of Ecology (NIOO-KNAW), 2017

  Dataset

• Globodera rostochiensis Raw sequence reads

  Eves-van den Akker, S. (Creator), Laetsch, D. R. (Creator), Thorpe, P. (Creator), Lilley, C. J. (Creator), Danchin, E. G. J. (Creator), Da Rocha, M. (Creator), Rancurel, C. (Creator), Holroyd, N. E. (Creator), Cotton, J. A. (Creator), Szitenberg, A. (Creator), Overmars, H. A. (Creator), Finkers-Tomczak, A. M. (Creator) & Smant, G. (Creator), Agriculture and Agri-Food Canada, 12 Dec 2015

  http://www.ebi.ac.uk/ena/data/view/PRJNA305631

  Dataset

• Data from: The genome of the yellow potato cyst nematode Globodera rostochiensis reveals insights into the basis of parasitism and virulence

  Eves-van den Akker, S. (Creator), Laetsch, D. R. (Creator), Thorpe, P. (Creator), Lilley, C. J. (Creator), Danchin, E. G. J. (Creator), Da Rocha, M. (Creator), Rancurel, C. (Creator), Holroyd, N. E. (Creator), Cotton, J. A. (Creator), Szitenberg, A. (Creator), Grenier, E. (Creator), Montarry, J. (Creator), Mimee, B. (Creator), Duceppe, M. O. (Creator), Boyes, I. (Creator), Marvin, J. M. C. (Creator), Jones, L. M. (Creator), Yusup, H. B. (Creator), Lafond-Lapalme, J. (Creator), Esquibet, M. (Creator), Sabeh, M. (Creator), Rott, M. (Creator), Overmars, H. A. (Creator), Finkers-Tomczak, A. M. (Creator) & Smant, G. (Creator), Wageningen University & Research, 2016

  DOI: 10.5061/dryad.4s5r6

  Dataset

• EcoFINDERS soil protist metabarcoding

  Geisen, S. (Creator), Laros, I. (Creator), Vizcaino, A. (Creator), Bonkowski, M. (Creator) & de Groot, G. A. (Creator), Wageningen UR, 18 Sept 2015

  https://www.ebi.ac.uk/ena/data/view/PRJEB9172

  Dataset

• protist metagenome Metagenome

  Zhu, L. (Creator), Chen, Y. (Creator), Sun, R. (Creator), Zhang, J. (Creator), Hale, L. (Creator), Dumack, K. (Creator), Geisen, S. (Creator), Deng, Y. (Creator), Duan, Y. (Creator), Zhu, B. (Creator), Li, Y. (Creator), Liu, W. (Creator), Wang, X. (Creator), Griffiths, B. S. (Creator), Bonkowski, M. (Creator), Zhou, J. (Creator) & Sun, B. (Creator), Chinese Academy of Sciences, 20 Jul 2021

  https://www.ncbi.nlm.nih.gov/bioproject/748517

  Dataset

• Bacteria Metagenome

  Zhu, L. (Creator), Chen, Y. (Creator), Sun, R. (Creator), Zhang, J. (Creator), Hale, L. (Creator), Dumack, K. (Creator), Geisen, S. (Creator), Deng, Y. (Creator), Duan, Y. (Creator), Zhu, B. (Creator), Li, Y. (Creator), Liu, W. (Creator), Wang, X. (Creator), Griffiths, B. S. (Creator), Bonkowski, M. (Creator), Zhou, J. (Creator) & Sun, B. (Creator), Chinese Academy of Sciences, 20 Jul 2021

  https://www.ncbi.nlm.nih.gov/bioproject/748514

  Dataset

• CAGES

  Jeanbille, M. (Creator), Romdhane, S. (Creator), Breuil, M.-C. (Creator), Bru, D. (Creator), Geisen, S. A. (Creator), Mounier, A. (Creator), Spor, A. (Creator) & Philippot, L. (Creator), INRAE, 6 Oct 2023

  https://www.ncbi.nlm.nih.gov/bioproject/1024888

  Dataset

• Data from: Not all are free-living: high-throughput DNA metabarcoding reveals a diverse community of protists parasitizing soil metazoa

  Geisen, S. (Creator), Laros, I. (Creator), Vizcaino, A. (Creator), Bonkowski, M. (Creator) & de Groot, G. A. (Creator), Wageningen University & Research, 12 May 2015

  DOI: 10.5061/dryad.3m680

  Dataset

• Initial soil microbiome of protist for tomato plant health

  Xiong, W. (Creator), Song, Y. (Creator), Yang, K. (Creator), Gu, Y. (Creator), Wei, Z. (Creator), Kowalchuk, G. A. (Creator), Xu, Y. (Creator), Jousset, A. (Creator), Shen, Q. (Creator) & Geisen, S. (Creator), Utrecht University, 5 Mar 2019

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA525676

  Dataset

• Bio-organic fertilizers stimulate indigenous soil Pseudomonas populations to enhance plant disease suppression

  Tao, C. (Creator), Li, R. (Creator), Xiong, W. (Creator), Shen, Z. (Creator), Liu, S. (Creator), Wang, B. (Creator), Ruan, Y. (Creator), Geisen, S. (Creator), Shen, Q. (Creator) & Kowalchuk, G. A. (Creator), Nanjing Agricultural University, 5 Jan 2020

  https://www.ncbi.nlm.nih.gov//bioproject/PRJNA598989

  Dataset

• Bacterial sequences in paddy soils

  Luan, L. (Creator), Jiang, Y. (Creator), Cheng, M. (Creator), Dini-Andreote, F. (Creator), Sui, Y. (Creator), Xu, Q. (Creator), Geisen, S. (Creator) & Sun, B. (Creator), Chinese Academy of Sciences, 21 Feb 2020

  https://www.ncbi.nlm.nih.gov/bioproject/607877

  Dataset

• ALP-producing bacteria

  Zheng, J. (Creator), Dini-andreote, F. (Creator), Luan, L. (Creator), Geisen, S. (Creator), Xue, J. (Creator), Li, H. (Creator), Sun, B. (Creator) & Jiang, Y. (Creator), Chinese Academy of Sciences, 23 Aug 2020

  https://www.ncbi.nlm.nih.gov/bioproject/658735

  Dataset

• Rhizosphere metagenome

  Xiong, W. (Creator), Song, Y. (Creator), Yang, K. (Creator), Gu, Y. (Creator), Wei, Z. (Creator), Kowalchuk, G. A. (Creator), Xu, Y. (Creator), Jousset, A. (Creator), Shen, Q. (Creator) & Geisen, S. (Creator), Nanjing Agricultural University, 19 Sept 2016

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA343573

  Dataset

• Initial soil microbiome

  Xiong, W. (Creator), Song, Y. (Creator), Yang, K. (Creator), Gu, Y. (Creator), Wei, Z. (Creator), Kowalchuk, G. A. (Creator), Xu, Y. (Creator), Jousset, A. (Creator), Shen, Q. (Creator) & Geisen, S. (Creator), Nanjing Agricultural University, 19 Sept 2018

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA492172

  Dataset

• fungal sequences in paddy soils

  Luan, L. (Creator), Jiang, Y. (Creator), Cheng, M. (Creator), Dini-Andreote, F. (Creator), Sui, Y. (Creator), Xu, Q. (Creator), Geisen, S. (Creator) & Sun, B. (Creator), Chinese Academy of Sciences, 21 Feb 2020

  https://www.ncbi.nlm.nih.gov/bioproject/608054

  Dataset

• small RNAseq - Plant parasitic cyst nematodes respond to viral infection through siRNA activation

  van de Ruitenbeek, S. (Creator), Machado Bertran, A. (Creator), Goverse, A. (Creator) & Overmars, H. (Creator), Wageningen University & Research, 25 Dec 2023

  https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-13351

  Dataset

• Indonesian Globodera rostochiensis population sequencing

  Handayani, N. D. (Creator), Lestari, P. (Creator), van As, W. (Creator), Holterman, M. H. M. (Creator), van den Elsen, S. J. J. (Creator), Dikin, A. (Creator), Bert, W. (Creator), Helder, J. (Creator) & van Steenbrugge, J. J. M. (Creator), Wageningen University & Research, 19 May 2021

  https://www.ncbi.nlm.nih.gov/bioproject/730992

  Dataset

• Malmeeae psbA-trnH intergenic spacer region, partial sequence; plastid

  Pirie, M. D. (Creator), Maas, P. J. M. (Creator), Wilschut, R. A. (Creator), Melchers-Sharrott, H. (Creator) & Chatrou, L. W. (Creator), Wageningen University & Research, 1 Jul 2018

  https://www.ncbi.nlm.nih.gov/popset/1409383530

  Dataset

• Malmeeae phytochrome C (PHYC) gene, partial cds

  Pirie, M. D. (Creator), Maas, P. J. M. (Creator), Wilschut, R. A. (Creator), Melchers-Sharrott, H. (Creator) & Chatrou, L. W. (Creator), Wageningen University & Research, 1 Jul 2018

  https://www.ncbi.nlm.nih.gov/popset/1409383447

  Dataset

• Malmeeae NADH dehydrogenase subunit F (ndhF) gene, partial cds; plastid

  Pirie, M. D. (Creator), Maas, P. J. M. (Creator), Wilschut, R. A. (Creator), Melchers-Sharrott, H. (Creator) & Chatrou, L. W. (Creator), Wageningen University & Research, 1 Jul 2018

  https://www.ncbi.nlm.nih.gov/popset/1409383495

  Dataset

• Supplementary material from "Combined effects of warming and drought on plant biomass depend on plant woodiness and community type: a meta-analysis"

  Wilschut, R. (Creator), De Long, J. (Creator), Geisen, S. A. (Creator), Hannula, S. E. (Creator), Quist, C. W. (Creator), Snoek, B. (Creator), Steinauer, K. (Creator), Wubs, E. R. J. (Creator), Yang, Z. Q. (Creator) & Thakur, M. P. (Creator), Wageningen University & Research, 24 Sept 2022

  DOI: 10.6084/m9.figshare.c.6214736

  Dataset

• Mosannona ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds; plastid

  Pirie, M. D. (Creator), Maas, P. J. M. (Creator), Wilschut, R. A. (Creator), Melchers-Sharrott, H. (Creator) & Chatrou, L. W. (Creator), Wageningen University & Research, 1 Jul 2018

  https://www.ncbi.nlm.nih.gov/popset/1409383541

  Dataset

• Data from: Plant community evenness responds to spatial plant-soil feedback heterogeneity primarily through the diversity of soil conditioning

  Wubs, E. R. J. (Creator) & Bezemer, T. M. (Creator), Netherlands Institute of Ecology (NIOO-KNAW), 20 Nov 2017

  DOI: 10.5061/dryad.11d82

  Dataset

• Soil microbiome amplicon sequencing on different fertilizer treatments - Bacteria run

  Harkes, P. (Creator), Van Steenbrugge, J. J. M. (Creator), Van Den Elsen, S. J. J. (Creator), Suleiman, A. K. A. (Creator), De Haan, J. J. (Creator), Holterman, M. H. M. (Creator) & Helder, J. (Creator), Wageningen University & Research, 20 Aug 2019

  https://www.ncbi.nlm.nih.gov/bioproject/561075

  Dataset