Research Output

2020

Asexual and sexual reproduction are two separate developmental pathways in a Termitomyces species

Vreeburg, S. M. E., de Ruijter, N. C. A., Zwaan, B. J., da Costa, R. R., Poulsen, M. & Aanen, D. K., 12 Aug 2020, In : Biology Letters. 16, 8, 1 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Carbon partitioning mechanisms in POTATO under drought stress

Aliche, E. B., Theeuwen, T. P. J. M., Oortwijn, M., Visser, R. G. F. & van der Linden, G., 1 Jan 2020, In : Plant Physiology and Biochemistry. 146, p. 211-219 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Composition and Diversity of Natural Bacterial Communities in Mabisi, a Traditionally Fermented Milk

Moonga, H. B., Schoustra, S. E., van den Heuvel, J., Linnemann, A. R., Samad, M. S., Shindano, J. & Smid, E. J., 30 Jul 2020, In : Frontiers in Microbiology. 11, 1816.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Detection of QTLs for genotype × environment interactions in tomato seeds and seedlings

Geshnizjani, N., Snoek, B. L., Willems, L. A. J., Rienstra, J. A., Nijveen, H., Hilhorst, H. W. M. & Ligterink, W., 17 May 2020, In : Plant Cell and Environment. 43, 8, p. 1973-1988

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Effect of donor-recipient relatedness on the plasmid conjugation frequency: A meta-analysis

Alderliesten, J. B., Duxbury, S. J. N., Zwart, M. P., De Visser, A. G. M., Stegeman, A. & Fischer, E. A. J., 26 May 2020, In : BMC Microbiology. 20, 1, 135.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Evolution of drug-resistant and virulent small colonies in phenotypically diverse populations of the human fungal pathogen Candida glabrata

Duxbury, S. J. N., Bates, S., Beardmore, R. E. & Gudelj, I., 29 Jul 2020, In : Proceedings. Biological sciences. 287, 1931, 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Genetic mapping of Fusarium wilt resistance in a wild banana Musa acuminata ssp. malaccensis accession

Ahmad, F., Martawi, N. M., Poerba, Y. S., de Jong, H., Schouten, H. & Kema, G. H. J., 12 Sep 2020, In : Theoretical and Applied Genetics.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Genetic variation in the feeding behavior of isofemale lines of nesidiocoris tenuis

Chinchilla-Ramírez, M., Pérez-Hedo, M., Pannebakker, B. A. & Urbaneja, A., 7 Aug 2020, In : Insects. 11, 8, p. 1-13 13 p., 513.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Genomics of sex allocation in the parasitoid wasp Nasonia vitripennis

Pannebakker, B. A., Cook, N., van den Heuvel, J., van de Zande, L. & Shuker, D. M., 20 Jul 2020, In : BMC Genomics. 21, 499.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access

How processing methods affect the microbial community composition in a cereal-based fermented beverage

Phiri, S., Schoustra, S. E., van den Heuvel, J., Smid, E. J., Shindano, J. & Linnemann, A. R., Jun 2020, In : LWT. 128, 109451.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Intra-specific variation in zinc, cadmium and nickel hypertolerance and hyperaccumulation capacities in Noccaea caerulescens

Kozhevnikova, A. D., Seregin, I. V., Aarts, M. G. M. & Schat, H., 12 Jun 2020, In : Plant and Soil. 452, p. 479–498

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Know your enemy: Genomes of biological control agents

Ferguson, K. B., 2020, Wageningen: Wageningen University. 310 p.

Research output: Thesisinternal PhD, WU

Open Access

Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing

Fuentes, R., Hesselink, T., Nieuwenhuis, R., Bakker, L. V., Schijlen, E. G. W. M., van Dooijeweert, W., Diaz Trivino, S., de Haan, J. R., Sanchez Perez, G. F., Zhang, X., Fransz, P., de Jong, J. H. S. G. M., van Dijk, A. D. J., de Ridder, D. & Peters, S. A., May 2020, In : The Plant Journal. 102, 3, p. 480-492

Research output: Contribution to journalArticleAcademicpeer-review

Natural variation of photosynthetic efficiency in Arabidopsis thaliana accessions under low temperature conditions

Prinzenberg, A. E., Campos-Dominguez, L., Kruijer, W., Harbinson, J. & Aarts, M. G. M., Aug 2020, In : Plant Cell and Environment. 43, 8, p. 2000-2013

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Next-generation biological control: the need for integrating genetics and genomics

Leung, K., Ras, E., Ferguson, K. B., Ariëns, S., Babendreier, D., Bijma, P., Bourtzis, K., Brodeur, J., Bruins, M. A., Centurión, A., Chattington, S. R., Chinchilla-Ramírez, M., Dicke, M., Fatouros, N. E., González-Cabrera, J., Groot, T. V. M., Haye, T., Knapp, M., Koskinioti, P., Le Hesran, S. & 18 others, Lyrakis, M., Paspati, A., Pérez-Hedo, M., Plouvier, W. N., Schlötterer, C., Stahl, J. M., Thiel, A., Urbaneja, A., van de Zande, L., Verhulst, E. C., Vet, L. E. M., Visser, S., Werren, J. H., Xia, S., Zwaan, B. J., Magalhães, S., Beukeboom, L. W. & Pannebakker, B. A., 14 Aug 2020, In : Biological Reviews.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Nutritional composition and microbial communities of two non-alcoholic traditional fermented beverages from Zambia: A study of mabisi and munkoyo

Chileshe, J., van den Heuvel, J., Handema, R., Zwaan, B. J., Talsma, E. F. & Schoustra, S., Jun 2020, In : Nutrients. 12, 6, 1628.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

On conflict and resolution in the termite-fungus symbiosis

Vreeburg, S. M. E., 2020, Wageningen: Wageningen University. 173 p.

Research output: Thesisinternal PhD, WU

Open Access
Open Access
1 Citation (Scopus)

Quantitative genetics of wing morphology in the parasitoid wasp Nasonia vitripennis: hosts increase sibling similarity

Xia, S., Pannebakker, B. A., Groenen, M. A. M., Zwaan, B. J. & Bijma, P., 19 May 2020, In : Heredity. 125, p. 40-49

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Reciprocal cybrids reveal how organellar genomes affect plant phenotypes

Flood, P. J., Theeuwen, T. P. J. M., Schneeberger, K., Keizer, P., Kruijer, W., Severing, E., Kouklas, E., Hageman, J. A., Wijfjes, R., Calvo-Baltanas, V., Becker, F. F. M., Schnabel, S. K., Willems, L. A. J., Ligterink, W., Van Arkel, J., Mumm, R., Gualberto, J. M., Savage, L., Kramer, D. M., Keurentjes, J. J. B. & 5 others, Van Eeuwijk, F., Koornneef, M., Harbinson, J., Aarts, M. G. M. & Wijnker, E., 13 Jan 2020, In : Nature Plants. 6, 1, p. 13-21

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Seasonal morphotypes of Drosophila suzukii differ in key life-history traits during and after a prolonged period of cold exposure

Panel, A. D. C., Pen, I., Pannebakker, B. A., Helsen, H. H. M. & Wertheim, B., 11 Aug 2020, In : Ecology and Evolution.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Small Molecule Carboxylates Inhibit Metallo-β-lactamases and Resensitize Carbapenem-Resistant Bacteria to Meropenem

Tehrani, K. H. M. E., Brüchle, N. C., Wade, N., Mashayekhi, V., Pesce, D., van Haren, M. J. & Martin, N. I., 12 Jun 2020, In : ACS Infectious Diseases. 6, 6, p. 1366-1371 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

The Arabidopsis Cdk1/Cdk2 homolog CDKA;1 controls chromosome axis assembly during plant meiosis

Yang, C., Sofroni, K., Wijnker, E., Hamamura, Y., Carstens, L., Harashima, H., Stolze, S. C., Vezon, D., Chelysheva, L., Orban-Nemeth, Z., Pochon, G., Nakagami, H., Schlögelhofer, P., Grelon, M. & Schnittger, A., 3 Feb 2020, In : EMBO Journal. 39, 3, e101625.

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)

The longevity of colonies of fungus-growing termites and the stability of the symbiosis

Wisselink, M., Aanen, D. K. & van ’t Padje, A., 13 Aug 2020, In : Insects. 11, 8, p. 1-15 15 p., 527.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

The Role of Transcriptional Regulation in Hybrid Vigor

Botet, R. & Keurentjes, J. J. B., 15 Apr 2020, In : Frontiers in Plant Science. 11, 410.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2019

Accelerating Climate Resilient Plant Breeding by Applying Next-Generation Artificial Intelligence

Harfouche, A. L., Jacobson, D. A., Kainer, D., Romero, J. C., Harfouche, A. H., Scarascia Mugnozza, G., Moshelion, M., Tuskan, G. A., Keurentjes, J. J. B. & Altman, A., Nov 2019, In : Trends in Biotechnology. 37, 11, p. 1217-1235

Research output: Contribution to journalArticleAcademicpeer-review

14 Citations (Scopus)

A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms

Tsugawa, H., Nakabayashi, R., Mori, T., Yamada, Y., Takahashi, M., Rai, A., Sugiyama, R., Yamamoto, H., Nakaya, T., Yamazaki, M., Kooke, R., Bac-Molenaar, J. A., Oztolan-Erol, N., Keurentjes, J. J. B., Arita, M. & Saito, K., 28 Mar 2019, In : Nature Methods. 16, 4, p. 295-298

Research output: Contribution to journalArticleAcademicpeer-review

30 Citations (Scopus)

Adaptation to developmental diet influences the response to selection on age at reproduction in the fruit fly

May, C. M., van den Heuvel, J., Doroszuk, A., Hoedjes, K. M., Flatt, T. & Zwaan, B. J., May 2019, In : Journal of Evolutionary Biology. 32, 5, p. 425-437

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters

Witjes, L., Kooke, R., van der Hooft, J. J. J., de Vos, R. C. H., Keurentjes, J. J. B., Medema, M. H. & Nijveen, H., 2 Apr 2019, In : BMC Research Notes. 12, 1, 194.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

An unusual sexual stage in the alkalophilic ascomycete Sodiomyces alkalinus

Kozlova, M. V., Bilanenko, E. N., Grum-Grzhimaylo, A. A. & Kamzolkina, O. V., Feb 2019, In : Fungal Biology. 123, 2, p. 140-150

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Bacterial community dynamics in lait caillé, a traditional product of spontaneous fermentation from Senegal

Groenenboom, A. E., Parker, M. E., De Vries, A., de Groot, S., Zobrist, S., Mansen, K., Milani, P., Kort, R., Smid, E. J. & Schoustra, S. E., 10 May 2019, In : PLoS ONE. 14, 5, e0215658.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Can interaction specificity in the fungus-farming termite symbiosis be explained by nutritional requirements of the fungal crop?

da Costa, R. R., Vreeburg, S. M. E., Shik, J. Z., Aanen, D. K. & Poulsen, M., Apr 2019, In : Fungal Ecology. 38, p. 54-61 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Characterization of phenology, physiology, morphology and biomass traits across a broad Euro-Mediterranean ecotypic panel of the lignocellulosic feedstock Arundo donax

Fabbrini, F., Ludovisi, R., Alasia, O., Flexas, J., Douthe, C., Ribas Carbó, M., Robson, P., Taylor, G., Scarascia-Mugnozza, G., Keurentjes, J. J. B. & Harfouche, A., Jan 2019, In : GCB Bioenergy. 11, 1, p. 152-170

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Combinations of Spok genes create multiple meiotic drivers in Podospora

Vogan, A. A., Ament-Velásquez, S. L., Granger-Farbos, A., Svedberg, J., Bastiaans, E., Debets, A. J. M., Coustou, V., Yvanne, H., Clavé, C., Saupe, S. J. & Johannesson, H., 26 Jul 2019, In : eLife. 8

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

Comment on ’single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi’

Auxier, B. & Bazzicalupo, A., 25 Oct 2019, In : eLife. 8, e47301.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Comparative analysis of repetitive sequences among species from the potato and the tomato clades

Gaiero Guadagna, P., Vaio, M., Peters, S. A., Schranz, M. E., de Jong, J. H. S. G. M. & Speranza, P. R., 15 Feb 2019, In : Annals of Botany. 123, 3, p. 521-532

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Computational metabolomics to characterize metabolites in stable isotope-labeled organisms

Tsugawa, H., Nakabayashi, R., T., M., Yamada, Y., Takahashi, M., Rai, A., Sugiyama, R., Yamamoto, H., Nakaya, T., Yamazaki, M., Kooke, R., Molenaar, J. A., Oztolan-Erol, N., Keurentjes, J. J. B., Arita, M. & Saito, K., 2019, In : Journal of the American Society for Mass Spectrometry. 30, supplement 1, p. 163-163

Research output: Contribution to journalAbstractAcademic

Control of plant meiosis using virus-induced gene silencing (VIGS)

Calvo-Baltanás, V., 2019, Wageningen: Wageningen University. 162 p.

Research output: Thesisinternal PhD, WU

Open Access

Disease-free monoculture farming by fungus-growing termites

Otani, S., Challinor, V. L., Kreuzenbeck, N. B., Kildgaard, S., Krath Christensen, S., Larsen, L. L. M., Aanen, D. K., Rasmussen, S. A., Beemelmanns, C. & Poulsen, M., 19 Jun 2019, In : Scientific Reports. 9, 1, 8819.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Distinct genomic signals of lifespan and life history evolution in response to postponed reproduction and larval diet in Drosophila

Hoedjes, K. M., Van Den Heuvel, J., Kapun, M., Keller, L., Flatt, T. & Zwaan, B. J., Dec 2019, In : Evolution Letters. 3, 6, p. 598-609

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Effect of mass rearing on the genetic diversity of the predatory mite Amblyseius swirskii

Paspati, A., Ferguson, K. B., Verhulst, E. C., Urbaneja, A., González‐Cabrera, J. & Pannebakker, B. A., 17 Jul 2019, In : Entomologia Experimentalis et Applicata. 167, 7, p. 670-681

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Effects of reduced crossover recombination on quantitative trait analysis

Wijnen, C. L., 2019, Wageningen: Wageningen University. 175 p.

Research output: Thesisinternal PhD, WU

Open Access
2 Citations (Scopus)

Environmental hotspots for azole resistance selection of aspergillus fumigatus, the netherlands

Schoustra, S. E., Debets, A. J. M., Rijs, A. J. M. M., Zhang, J., Snelders, E., Leendertse, P. C., Melchers, W. J. G., Rietveld, A. G., Zwaan, B. J. & Verweij, P. E., 1 Jul 2019, In : Emerging Infectious Diseases. 25, 7, p. 1347-1353

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
17 Citations (Scopus)

Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map

Kooke, R., Morgado, L. N., Becker, F. F. M., van Eekelen, H. D. L. M., Hazarika, R., Zhang, Q., de Vos, C. H., Johannes, F. & Keurentjes, J. J. B., 2019, In : Genome Research. 29, 1, p. 96-106

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Facilitators of adaptation and antifungal resistance mechanisms in clinically relevant fungi

Hokken, M. W. J., Zwaan, B. J., Melchers, W. J. G. & Verweij, P. E., Nov 2019, In : Fungal Genetics and Biology. 132, 103254.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)

Far-red radiation increases dry mass partitioning to fruits but reduces Botrytis cinerea resistance in tomato

Ji, Y., Ouzounis, T., Courbier, S., Kaiser, E., Nguyen, P. T., Schouten, H. J., Visser, R. G. F., Pierik, R., Marcelis, L. F. M. & Heuvelink, E., 1 Dec 2019, In : Environmental and Experimental Botany. 168, 103889.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Fermented cereal-based Munkoyo beverage: Processing practices, microbial diversity and aroma compounds

Phiri, S., Schoustra, S. E., van den Heuvel, J., Smid, E. J., Shindano, J. & Linnemann, A., 22 Oct 2019, In : PLoS ONE. 14, 10, e0223501.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)