Research Output 1986 2020

2020

Phylogenomics changes our understanding about earwig evolution.

Wipfler, D., Koehler, W., Frandsen, P. B., Donath, A., Liu, S., Machida, R., Misof, B., Peters, R. S., Shimizu, S., Zhou, X. & Simon, S., 13 Jan 2020, In : Systematic Entomology.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Dermaptera
social behavior
phylogeny
insect
phylogenetics

The spatiotemporal control of cell divisions in Physcomitrella development

Tang, H., 2020, Wageningen: Wageningen University. 143 p.

Research output: Thesisinternal PhD, WU

Open Access
6 Citations (Scopus)

Cell Boundary Confinement Sets the Size and Position of the E. coli Chromosome

Wu, F., Swain, P., Kuijpers, L., Zheng, X., Felter, K., Guurink, M., Solari, J., Jun, S., Shimizu, T. S., Chaudhuri, D., Mulder, B. & Dekker, C., 8 Jul 2019, In : Current Biology. 29, 13, p. 2131-2144.e4

Research output: Contribution to journalArticleAcademicpeer-review

Chromosomes
Escherichia coli
chromosomes
cells
chromosome morphology
8 Citations (Scopus)

CLASP stabilization of plus ends created by severing promotes microtubule creation and reorientation

Lindeboom, J. J., Nakamura, M., Saltini, M., Hibbel, A., Walia, A., Ketelaar, T., Emons, A. M. C., Sedbrook, J. C., Kirik, V., Mulder, B. M. & Ehrhardt, D. W., 7 Jan 2019, In : The Journal of cell biology. 218, 1, p. 190-205

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microtubules
Polymers
Plant Cells
Guanosine Triphosphate
Light

Defense of pyrethrum flowers: repelling herbivore and recruiting carnivore by producing aphid alarm pheromone

Li, J., Hu, H., Mao, J., Yu, L., Stoopen, G., Wang, M., Mumm, R., de Ruijter, N. C. A., Dicke, M., Jongsma, M. A. & Wang, C., Aug 2019, In : New Phytologist. 223, 3, p. 1607-1620

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chrysanthemum cinerariifolium
alarm pheromones
Aphids
Herbivory
Pheromones

Dynamic reorganization of microtubule networks: building the new by breaking down the old

Saltini, M., 2019, Wageningen: Wageningen University. 173 p.

Research output: Thesisinternal PhD, WU

4 Citations (Scopus)

Exocyst subunit Sec6 is positioned by microtubule overlaps in the moss phragmoplast prior to cell plate membrane arrival

Tang, H., de Keijzer, J., Overdijk, E. J. R., Sweep, E., Steentjes, M., Vermeer, J. E. M., Janson, M. E. & Ketelaar, T., 11 Feb 2019, In : Journal of Cell Science. 132, 3

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Bryophyta
Microtubules
Cell Membrane
Cytokinesis
Munc18 Proteins

Geometric cues forecast the switch from two- to three-dimensional growth in Physcomitrella patens

Tang, H., Duijts, K., Bezanilla, M., Scheres, B., Vermeer, J. E. M. & Willemsen, V., 22 Oct 2019, In : New Phytologist.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Bryopsida
Physcomitrella patens
Cues
gametophores
Growth

Gravity-driven syneresis in model low-fat mayonnaise

Wu, Q., Punter, M. T. J. J. M., Kodger, T. E., Arnaudov, L., Mulder, B. M., Stoyanov, S. & Van Der Gucht, J., 31 Oct 2019, In : Soft Matter. 15, 46, p. 9474-9481 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
starches
fats
Starch
Gravitation
Fats

Live cell imaging of arabidopsis root hairs

Ketelaar, T., 31 May 2019, Methods in Molecular Biology: Protocol. Cvrcková, F. & Zárský, V. (eds.). Hertfordshire: Springer, p. 323-327 5 p. (Methods in Molecular Biology; vol. 1992).

Research output: Chapter in Book/Report/Conference proceedingChapter

Arabidopsis
Growth

Models for spatial organization of microtubules and cell polarization

Foteinopoulos, P., 2019, Wageningen: Wageningen University. 203 p.

Research output: Thesisinternal PhD, WU

Open Access

Optical trapping in plant cells

Ketelaar, T., de Ruijter, N. & Niehren, S., 31 May 2019, Methods in Molecular Biology: Methods and protocols. Cvrcková, F. & Zárský, V. (eds.). 2 ed. Hertfordshire: Springer, p. 231-238 8 p. (Methods in Molecular Biology; vol. 1992).

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical Tweezers
Plant Cells

Root architecture system of oilseed species from the Jatropha genus during seed development and germination

de Brito, C. D., Loureiro, M. B., Ribeiro, P. R., Vasconcelos, P. C. T., Moreno, M. L. V., Fernandez, L. G., Hilhorst, H. W. M., van Lammeren, A., Ligterink, W. & de Castro, R. D., 1 Nov 2019, In : Industrial Crops and Products. 139, 111514.

Research output: Contribution to journalArticleAcademicpeer-review

Jatropha
oilseeds
seed development
seed germination
embryo (plant)
3 Citations (Scopus)

Small RNA molecules and their role in plant disease

Rose, L. E., Overdijk, E. J. R. & van Damme, M., Jan 2019, In : European Journal of Plant Pathology. 153, 1, p. 1-14

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
plant diseases and disorders
RNA
RNA interference
pathogens
gene expression

The Flower Petal Training System in Microsurgery: Validation of a Training Model Using a Randomized Controlled Trial

Volovici, V., Dammers, R., Lawton, M. T., Dirven, C. M. F., Ketelaar, T., Lanzino, G. & Zamfirescu, D. G., Dec 2019, In : Annals of Plastic Surgery. 83, 6, p. 697-701 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

Microsurgery
Randomized Controlled Trials
Femoral Artery
Chickens
Leg
Open Access
Confocal Microscopy
plant pathogens
exocytosis
Exocytosis
Infection
2018
13 Citations (Scopus)

A computational framework for cortical microtubule dynamics in realistically shaped plant cells

Chakrabortty, B., Blilou, I., Scheres, B. & Mulder, B. M., 1 Feb 2018, In : PLoS Computational Biology. 14, 2, e1005959.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microtubules
Plant Cells
microtubules
Geometry
Cell
13 Citations (Scopus)

A Plausible Microtubule-Based Mechanism for Cell Division Orientation in Plant Embryogenesis

Chakrabortty, B., Willemsen, V., de Zeeuw, T., Liao, C. Y., Weijers, D., Mulder, B. & Scheres, B., 8 Oct 2018, In : Current Biology. 28, 19, p. 3031-3043.e2

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microtubules
Cell Division
microtubules
Embryonic Development
cell division
8 Citations (Scopus)

Arabidopsis phospholipase C3 is involved in lateral root initiation and ABA responses in seed germination and stomatal closure

Zhang, Q., van Wijk, R., Shahbaz, M., Roels, W., Van Schooten, B., Vermeer, J. E. M., Zarza, X., Guardia, A., Scuffi, D., García-Mata, C., Laha, D., Williams, P., Willems, L. A. J., Ligterink, W., Hoffmann-Benning, S., Gillaspy, G., Schaaf, G., Haring, M. A., Laxalt, A. M. & Munnik, T., 1 Mar 2018, In : Plant and Cell Physiology. 59, 3, p. 469-486

Research output: Contribution to journalArticleAcademicpeer-review

Phospholipases
guard cells
Germination
Arabidopsis
Seeds

Author Correction: Diffusible repression of cytokinin signalling produces endodermal symmetry and passage cells

Andersen, T. G., Naseer, S., Ursache, R., Wybouw, B., Smet, W., De Rybel, B., Vermeer, J. E. M. & Geldner, N., 20 Jun 2018, In : Nature. 559, 7714, p. E9-E9

Research output: Contribution to journalComment/Letter to the editorAcademic

Ficus
Cytokinins
Publications
15 Citations (Scopus)

Breakout — lateral root emergence in Arabidopsis thaliana

Stoeckle, D., Thellmann, M. & Vermeer, J. E. M., Feb 2018, In : Current Opinion in Plant Biology. 41, p. 67-72

Research output: Contribution to journalArticleAcademicpeer-review

Arabidopsis thaliana
endodermis
edaphic factors
epidermis (plant)
organogenesis
2 Citations (Scopus)
Open Access
Microfluidics
HEK293 Cells
G-Protein-Coupled Receptors
calcium
Calcium

Cellular signaling and cytoskeleton dynamics in Phytophthora

Govers, F., van den Hoogen, D. J., Kots, K. & Ketelaar, T., 2018.

Research output: Contribution to conferenceAbstractAcademic

Oomycetes
Phytophthora
Cytoskeleton
G-Protein-Coupled Receptors
Phosphatidylinositols
22 Citations (Scopus)

Diffusible repression of cytokinin signalling produces endodermal symmetry and passage cells

Andersen, T. G., Naseer, S., Ursache, R., Wybouw, B., Smet, W., De Rybel, B., Vermeer, J. E. M. & Geldner, N., 22 Mar 2018, In : Nature. 555, 7697, p. 529-533

Research output: Contribution to journalArticleAcademicpeer-review

Cytokinins
Xylem
Transcytosis
Phloem
Angiosperms
6 Citations (Scopus)

Down-regulation of cladofulvin biosynthesis is required for biotrophic growth of Cladosporium fulvum on tomato: A secondary metabolite prevents fungal biotrophy

Griffiths, S., Mesarich, C. H., Overdijk, E. J. R., Saccomanno, B., De Wit, P. J. G. M. & Collemare, J., 25 Jan 2018, In : Molecular Plant Pathology. 19, 2, p. 369-380

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Passalora fulva
Cladosporium
secondary metabolite
Lycopersicon esculentum
secondary metabolites
7 Citations (Scopus)

Effects of systematic variation in size and surface coating of silver nanoparticles on their in vitro toxicity to macrophage RAW 264.7 cells

Makama, S. I., Kloet, S. K., Piella, J., van den Berg, J. H. J., de Ruijter, N. C. A., Puntes, V. F., Rietjens, I. M. C. M. & van den Brink, N. W., 1 Mar 2018, In : Toxicological sciences. 162, 1, p. 79-88

Research output: Contribution to journalArticleAcademicpeer-review

Macrophages
Silver
Nanoparticles
Toxicity
Reactive Oxygen Species
12 Citations (Scopus)

Green light for quantitative live-cell imaging in plants

Grossmann, G., Krebs, M., Maizel, A., Stahl, Y., Vermeer, J. E. M. & Ott, T., 29 Jan 2018, In : Journal of Cell Science. 131, 2, jcs.209270.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Methyl Green
Plant Cells
Microscopy
Light
Photons

Modelling the Plant Microtubule Cytoskeleton

Deinum, E. E. & Mulder, B. M., 6 Nov 2018, Mathematical Modelling in Plant Biology. Morris, R. J. (ed.). Springer International Publishing, p. 53-67 Chapter 4

Research output: Chapter in Book/Report/Conference proceedingChapter

cytoskeleton
microtubules
physics
complement
genes
24 Citations (Scopus)

Root branching toward water involves posttranslational modification of transcription factor ARF7

Orosa-Puente, B., Leftley, N., von Wangenheim, D., Banda, J., Srivastava, A. K., Hill, K., Truskina, J., Bhosale, R., Morris, E., Srivastava, M., Kümpers, B., Goh, T., Fukaki, H., Vermeer, J. E. M., Vernoux, T., Dinneny, J. R., French, A. P., Bishopp, A., Sadanandom, A. & Bennett, M. J., 21 Dec 2018, In : Science. 362, 6421, p. 1407-1410

Research output: Contribution to journalArticleAcademicpeer-review

Sumoylation
Post Translational Protein Processing
Indoleacetic Acids
Transcription Factors
Water
7 Citations (Scopus)

Solanaceous exocyst subunits are involved in immunity to diverse plant pathogens

Du, Y., Overdijk, E. J. R., Berg, J. A., Govers, F. & Bouwmeester, K., 23 Jan 2018, In : Journal of Experimental Botany. 69, 3, p. 655-666

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
plant pathogens
Immunity
immunity
Nicotiana benthamiana
Arabidopsis
16 Citations (Scopus)

SPR2 protects minus ends to promote severing and reorientation of plant cortical microtubule arrays

Nakamura, M., Lindeboom, J. J., Saltini, M., Mulder, B. M. & Ehrhardt, D. W., 1 Mar 2018, In : Journal of Cell Biology. 217, 3, p. 915-927

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microtubules
Polymers
Centrosome
Arabidopsis
Computer Simulation
2017
8 Citations (Scopus)

Chemical changes and increased degradability of wheat straw and oak wood chips treated with the white rot fungi Ceriporiopsis subvermispora and Lentinula edodes

van Kuijk, S. J. A., Sonnenberg, A. S. M., Baars, J. J. P., Hendriks, W. H., del Río, J. C., Rencoret, J., Gutiérrez, A., de Ruijter, N. C. A. & Cone, J. W., 2017, In : Biomass and Bioenergy. 105, p. 381-391

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Ceriporiopsis subvermispora
Lentinula edodes
white-rot fungi
wood chips
Straw

Control mechanisms of microtubule overlap regions

Jongerius, A., 2017, Wageningen: Wageningen University. 133 p.

Research output: Thesisinternal PhD, WU

Open Access
microtubules
proteins
mitotic spindle apparatus
shrinkage
6 Citations (Scopus)
Open Access
Phytophthora infestans
Plant Cells
Cell Wall
Actins
Oomycetes
14 Citations (Scopus)

How selective severing by katanin promotes order in the plant cortical microtubule array

Deinum, E. E., Tindemans, S. H., Lindeboom, J. & Mulder, B. M., 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 27, p. 6942-6947

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microtubules
katanin
Plant Development
Computer Simulation
Cues

Live cell imaging of the cytoskeleton in Phytophthora pathogens reveals unique actin and microtubule configurations

Kots, K., Ketelaar, T., van den Hoogen, D. J., Meijer, H. J. G. & Govers, F., 2017, Book of Abstracts Oomycete Molecular Genetics Network Workshop, Pacific Grove, CA, USA 11-14 March 2017. p. 27-27

Research output: Chapter in Book/Report/Conference proceedingAbstract

Phytophthora
Oomycetes
Cytoskeleton
Microtubules
Actins

Live cell imaging of the cytoskeleton in Phytophthora pathogens reveals unique actin and microtubule configurations

Kots, K., Ketelaar, T., van den Hoogen, D. J., Meijer, H. J. G. & Govers, F., 2 May 2017, Abstract Book 29th Fungal Genetics Conference Asilomar 17, Pacific Grove, CA, USA 14-19 March 2017. Genetics Society of America, p. 59-59

Research output: Chapter in Book/Report/Conference proceedingAbstract

Phytophthora
Oomycetes
Cytoskeleton
Microtubules
Actins
Open Access
microtubules
cell walls
strength (mechanics)
cellulose
nutrient transport

Plant cortical microtubule dynamics and cell division plane orientation

Chakrabortty, B., 2017, Wageningen: Wageningen University. 124 p.

Research output: Thesisinternal PhD, WU

Open Access
microtubules
cell division
morphogenesis
Arabidopsis
stress response
46 Citations (Scopus)

Plant Cytokinesis: Terminology for Structures and Processes

Smertenko, A., Assaad, F., Baluška, F., Bezanilla, M., Buschmann, H., Drakakaki, G., Hauser, M. T., Janson, M., Mineyuki, Y., Moore, I., Müller, S., Murata, T., Otegui, M. S., Panteris, E., Rasmussen, C., Schmit, A. C., Šamaj, J., Samuels, L., Staehelin, L. A., Van Damme, D. & 2 others, Wasteneys, G. & Žárský, V., Dec 2017, In : Trends in Cell Biology. 27, 12, p. 885-894

Research output: Contribution to journalArticleAcademicpeer-review

Cytokinesis
Terminology
Plant Cells
Actin Cytoskeleton
Microtubules

Shaping plant microtubule networks via overlap formation

de Keijzer, J., 2017, Wageningen: Wageningen University. 151 p.

Research output: Thesisinternal PhD, WU

Open Access
membrane
moss
polymerization
positioning
protein
14 Citations (Scopus)

Shortening of Microtubule overlap regions defines membrane delivery sites during plant cytokinesis

de Keijzer, J., Kieft, H., Ketelaar, T., Goshima, G. & Janson, M. E., 2017, In : Current Biology. 27, 4, p. 514-520

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Kinesin
Cytokinesis
cytokinesis
Microtubules
shortenings
10 Citations (Scopus)

Stacks off tracks: a role for the golgin AtCASP in plant endoplasmic reticulum-golgi apparatus tethering.

Osterrieder, A., Sparkes, I. A., Botchway, S. W., Ward, A., Ketelaar, T., de Ruijter, N. C. A. & Hawes, C., 15 Jun 2017, In : Journal of Experimental Botany. 68, 13, p. 3339-3350

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Golgi Apparatus
Golgi apparatus
Endoplasmic Reticulum
endoplasmic reticulum
Optical Tweezers
6 Citations (Scopus)

Unlocking the story in the swab: A new genotyping assay for the amphibian chytrid fungus Batrachochytrium dendrobatidis

Byrne, A. Q., Rothstein, A. P., Poorten, T. J., Erens, J., Settles, M. L. & Rosenblum, E. B., 1 Nov 2017, In : Molecular Ecology Resources. 17, 6, p. 1283-1292 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Chytridiomycota
Amphibians
amphibian
genotyping
amphibians
2016
10 Citations (Scopus)

Interaction between the moss Physcomitrella patens and Phytophthora: A novel pathosystem for live-cell imaging of subcellular defence

Overdijk, E. J. R., De Keijzer, J., De Groot, D., Schoina, C., Bouwmeester, K., Ketelaar, T. & Govers, F., 2016, In : Journal of Microscopy. 263, 2, p. 171-180

Research output: Contribution to journalArticleAcademicpeer-review

Bryopsida
Phytophthora
Bryophyta
Microscopy
Up-Regulation
10 Citations (Scopus)

Low-phosphate induction of plastidal stromules is dependent on strigolactones but not on the canonical strigolactone signaling component MAX2

Vismans, G., van der Meer, T., Langevoort, O., Schreuder, M., Bouwmeester, H., Peisker, H., Dörman, P., Ketelaar, T. & van der Krol, S., 2016, In : Plant Physiology. 172, 4, p. 2235-2244

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Plastids
Plant Growth Regulators
Droughts
Fungi
Phosphates
5 Citations (Scopus)
Open Access
Metabolomics
Microfluidics
Biosensing Techniques
Biosensors
Assays
17 Citations (Scopus)

Shear-induced structuring as a tool to make anisotropic materials using soy protein concentrate

Grabowska, K. J., Zhu, S., Dekkers, B. L., de Ruijter, N. C. A., Gieteling, J. & van der Goot, A. J., 2016, In : Journal of Food Engineering. 188, p. 77-86

Research output: Contribution to journalArticleAcademicpeer-review

soy protein concentrate
Soybean Proteins
confocal laser scanning microscopy
shear stress
carbohydrate structure
2 Citations (Scopus)

Tolerância à dessecação e longevidade de sementes germinadas de Sesbania virgata (Cav.) Pers.

Translated title of the contribution: Desiccation tolerance and longevity of germinated Sesbania virgata (Cav.) Pers. seedsCosta, M. C. D., Faria, J. M. R., José, A. C., Ligterink, W. & Hilhorst, H. W. M., 2016, In : Journal of seed science. 38, 1, p. 50-56

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Sesbania
desiccation (plant physiology)
seeds
root radicle
osmotic treatment