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Latest developments on Streptococcus suis: an emerging zoonotic pathogen: part 1

Segura, M., Zheng, H., de Greeff, A., Gao, G. F., Grenier, D., Jiang, Y., Chengping, L., Maskell, D., Oishi, K., Okura, M., Osawa, R., Schultsz, C., Schwerk, C., Sekizaki, T., Smith, H., Srimanote, P., Takamatsu, D., Tang, J., Tenenbaum, T., Tharavichitkul, P. & 7 others, Hoa, N. T., Valentin-Weigand, P., Wells, J. M., Wertheim, H., Zhu, B., Xu, J. & Gottschalk, M., 2014, In : Future Microbiology. 9, 4, p. 441-444

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25 Citations (Scopus)

Latest developments on Streptococcus suis: an emerging zoonotic pathogen: part 2

Segura, M., Zheng, H., de Greeff, A., Gao, G. F., Gremier, D., Jiang, Y., Chengping, L., Maskell, D., Oishi, K., Okura, M., Osawa, R., Schultsz, C., Schwerk, C., Sekizaki, T., Smith, H., Srimanote, P., Takamatsu, D., Tang, J., Tenenbaum, T., Tharavichitkul, P. & 7 others, Hoa, N. T., Valentin-Weigand, P., Wells, J. M., Wertheim, H., Zhu, B., Xu, J. & Gottschalk, M., 2014, In : Future Microbiology. 9, 5, p. 587-591

Research output: Contribution to journalArticleAcademicpeer-review

22 Citations (Scopus)

Laxative treatment with polyethylene glycol decreases microbial primary bile salt dehydroxylation and lipid metabolism in the intestine of rats

van der Wulp, N. Y., Derrien, M., Stellaard, F., Wolters, H., Kleerebezem, M., Dekker, J., Rings, E. H., Groen, A. K. & Verkade, H. J., 2013, In : American Journal of Physiology. Gastrointestinal and Liver Physiology. 305, 7, p. G474-G482

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8 Citations (Scopus)
Open Access

Lgt processing is an essential step in Streptococcus suis lipoprotein mediated innate immune activation

Wichgers, P. J., Rebel, J. M. J., Smits, M. A., van Putten, J. P. & Smith, H. E., 2011, In : PLoS ONE. 6, 7, e22299.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
25 Citations (Scopus)

Live Faecalibacterium prausnitzii in an apical anaerobic model of the intestinal epithelial barrier

Ulluwishewa, D., Anderson, R. C., Young, W., McNabb, W. C., van Baarlen, P., Moughan, P. J., Wells, J. M. & Roy, N. C., 2015, In : Cellular Microbiology. 17, 2, p. 226-240

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28 Citations (Scopus)

Lysozyme Resistance in Streptococcus suis Is Highly Variable and Multifactorial

Wichgers, P. J., van Weeghel, C., Rebel, J. M. J., Smits, M. A., van Putten, J. P. M. & Smith, H. E., 2012, In : PLoS ONE. 7, 4, e36281.

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Open Access
12 Citations (Scopus)

Major differential gene regulation in Coxiella burnetii between in vivo and in vitro cultivation models

Kuley, R., de Vries, R., Smith, H. E., Smits, M. A., Roest, H. I. J. & Bossers, A., 2015, In : BMC Genomics. 16, 953.

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Open Access
14 Citations (Scopus)

Meta-analysis of Chicken - Salmonella infection experiments

te Pas, M. F. W., Hulsegge, B., Schokker, D. J., Smits, M. A., Fife, M., Zoorob, R., Endale, M. L. & Rebel, J. M. J., 2012, In : BMC Genomics. 13, 28 p., 146.

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Open Access
9 Citations (Scopus)

Metabolic Context of the Competence-Induced Checkpoint for Cell Replication in Streptococcus suis

Zaccaria, E., Wells, J. M. & van Baarlen, P., 2016, In : PLoS ONE. 11, 5, e0153571.

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Open Access
8 Citations (Scopus)

Metabolic in Vivo Labeling Highlights Differences of Metabolically Active Microbes from the Mucosal Gastrointestinal Microbiome between High-Fat and Normal Chow Diet

Oberbach, A., Haange, S. B., Schlichting, N., Heinrich, M., Lehmann, S., Till, H., Hugenholtz, F., Kullnick, Y., Smidt, H., Frank, K., Seifert, J., Jehmlich, N. & Von Bergen, M., 2017, In : Journal of Proteome Research. 16, 4, p. 1593-1604

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12 Citations (Scopus)

Metatranscriptome analysis of the microbial fermentation of dietary milk proteins in the murine gut

Hugenholtz, F., Davids, M., Schwarz, J., Müller, M., Tomé, D., Schaap, P., Hooiveld, G. J. E. J., Smidt, H. & Kleerebezem, M., 1 Apr 2018, In : PLoS ONE. 13, 4, e0194066.

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Open Access
2 Citations (Scopus)

Microbial communities in a dynamic in vitro model for the human ileum resemble the human ileal microbiota

Stolaki, M., Minekus, M., Venema, K., Lahti, L., Smid, E. J., Kleerebezem, M. & Zoetendal, E. G., 1 Aug 2019, In : FEMS microbiology ecology. 95, 8, fiz096.

Research output: Contribution to journalArticleAcademicpeer-review

Microbial domestication signatures of Lactococcus lactis can be reproduced by experimental evolution

Bachmann, H., Starrenburg, M. J. C., Molenaar, D., Kleerebezem, M. & van Hylckama Vlieg, J. E. T., 2012, In : Genome Research. 22, 1, p. 115-124

Research output: Contribution to journalArticleAcademicpeer-review

84 Citations (Scopus)

Microbial metabolic gatekeeping in the jejunum

Kleerebezem, M., 1 Jun 2018, In : Nature Microbiology. 3, 6, p. 650-651

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Microbiome and skin diseases

Zeeuwen, P. L., Kleerebezem, M., Timmerman, H. M. & Schalkwijk, J., 2013, In : Current Opinion in Allergy and Clinical Immunology. 13, 5, p. 514-520

Research output: Contribution to journalArticleAcademicpeer-review

76 Citations (Scopus)

Microbiome dynamics of human epidermis following skin barrier disruption

Zeeuwen, P. L., te Boekhorst, J., van den Bogaard, E. H., de Koning, H. D., van de Kerkhof, P. M., Saulnier, D. M., van Swam, I. I., van Hijum, S. A. F. T., Kleerebezem, M., Schalkwijk, J. & Timmerman, H. M., 2012, In : Genome Biology. 13, R101.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
99 Citations (Scopus)

Microbiota conservation and BMI signatures in adult monozygotic twins

Tims, S., Derom, C., Jonkers, D. M. A. E., Vlietinck, R., Saris, W. H., Kleerebezem, M., de Vos, W. M. & Zoetendal, E. G., 2013, In : ISME Journal. 7, p. 707-717

Research output: Contribution to journalArticleAcademicpeer-review

134 Citations (Scopus)

Mining microbial metatranscriptomes for expression of antibiotic resistance genes under natural conditions

Versluis, D., D'Andrea, M. M., Ramiro Garcia, J., Leimena, M. M., Hugenholtz, F., Zhang, J., Öztürk, B., Nylund, L., Sipkema, D., van Schaik, W., de Vos, W. M., Kleerebezem, M., Smidt, H. & van Passel, M. W. J., 2015, In : Scientific Reports. 5, 10 p., 11981.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
26 Citations (Scopus)

Modulation of Lactobacillus plantarum gastrointestinal robustness by fermentation conditions enables identification of bacterial robustness markers

van Bokhorst-van de Veen, H., Lee, I., Marco, M. L., Bron, P. A. & Kleerebezem, M., 2012, In : PLoS ONE. 7, 7, 13 p., e39053.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
39 Citations (Scopus)

Modulation of Mucosal Immune Response, Tolerance, and Proliferation in Mice Colonized by the Mucin-Degrader Akkermansia muciniphila

Derrien, M. M. N., van Baarlen, P., Hooiveld, G. J. E. J., Norin, E., Müller, M. & de Vos, W. M., 2011, In : Frontiers in Microbiology. 2, 166.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
196 Citations (Scopus)

Molecular and metabolic adaptations of Lactococcus lactis at near-zero growth rates

Ercan, O., Wels, M., Smid, E. J. & Kleerebezem, M., 2015, In : Applied and Environmental Microbiology. 81, 1, p. 320-331

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)

Molecular signatures for the dynamic process of establishing intestinal host-microbial homeostasis: potential for disease diagnostics?

El Aidy, S. F. & Kleerebezem, M., 2013, In : Current Opinion in Gastroenterology. 29, 6, p. 621-627

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Monitoring immune modulation by nutrition in the general population: identifying and substantiating effects on human health.

Albers, R., Bourdet-Sicard, R., Braun, D., Calder, P. C., Herz, U., Lambert, C., Lenoir-Wijnkoop, I., Meheust, A., Ouwehand, A., Phothirath, P., Sako, T., Salminen, S., Siemensma, A., van Loveren, H. & Sack, U., 2013, In : British Journal of Nutrition. 110, S2, p. S1-S30

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
49 Citations (Scopus)

Mouse models for human intestinal microbiota research: a critical evaluation

Hugenholtz, F. & de Vos, W. M., Jan 2018, In : Cellular and Molecular Life Sciences. 75, 1, p. 149-160

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
60 Citations (Scopus)

Mucin muc2 deficiency and weaning influences the expression of the innate defense genes reg3ß, reg3¿ and angiogenin-4

Burger-van Paassen, N., Loonen, L. M. P., Witte-Bouma, J., Korteland-van Male, A. M., de Bruijn, A. C., van der Sluis, M., Lu, P., van Goudoever, J. B., Wells, J., Dekker, J., van Seuningen, I. & Renes, I. B., 2012, In : PLoS ONE. 7, 6, e38798.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
40 Citations (Scopus)

Mucosal delivery of a pneumococcal vaccine using lactococcus lactis affords protection against respiratory infection

Hanniffy, S. B., Carter, A. T., Hitchin, E. & Wells, J., 2007, In : The Journal of Infectious Diseases. 195, 2, p. 185-193

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
77 Citations (Scopus)

Mucosal delivery of therapeutic and prophylactic molecules using lactic acis bacteria

Wells, J. & Mercenier, A. M. E., 2008, In : Nature Reviews Microbiology. 6, 5, p. 349-362

Research output: Contribution to journalArticleAcademicpeer-review

363 Citations (Scopus)

Multifactorial diversity sustains microbial community stability

Erkus, O., de Jager, V. C. L., Spus, M., van Alen-Boerrigter, I. J., van Rijswijck, I. M. H., Hazelwood, L., Janssen, P. W., van Hijum, S. A. F. T., Kleerebezem, M. & Smid, E. J., 2013, In : ISME Journal. 7, 11, p. 2126-2136

Research output: Contribution to journalArticleAcademicpeer-review

76 Citations (Scopus)

Multi-level integration of environmentally perturbed internal phenotypes reveals key points of connectivity between them

Benis, N., Kar, S. K., Martins dos Santos, V. A. P., Smits, M. A., Schokker, D. & Suarez-Diez, M., 2017, In : Frontiers in Physiology. 8, 11 p., 388.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Nearly complete genome sequence of Lactobacillus plantarum strain NIZO2877

Martino, M. E., Bayjanov, J. R., Joncour, P., Hughes, S., Gillet, B., Kleerebezem, M., Siezen, R., van Hijum, S. A. F. T. & Leulier, F., 25 Nov 2015, In : Genome Announcements. 3, 6, e0137015.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Network analysis of temporal functionalities of the gut induced by perturbations in new-born piglets

Benis, N., Schokker, D., Suarez Diez, M., Martins dos Santos, V. A. P., Smidt, H. & Smits, M. A., 2015, In : BMC Genomics. 16, 556.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats

Martino, M. E., Bayjanov, J. R., Caffrey, B. E., Wels, M., Joncour, P., Hughes, S., Gillet, B., Kleerebezem, M., van Hijum, S. A. F. T. & Leulier, F., 2016, In : Environmental Microbiology. 18, 12, p. 4974-4989

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
43 Citations (Scopus)

Novel Polyfermentor Intestinal Model (PolyFermS) for Controlled Ecological Studies: Validation and Effect of pH

Zihler Berner, A., Fuentes Enriquez de Salamanca, S., Dostal, A., Payne, A. N., Vazquez Gutierrez, P., Chassard, C., Grattepanche, F., de Vos, W. M. & Lacroix, C., 2013, In : PLoS ONE. 8, 10, e77772.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
21 Citations (Scopus)

O-glycosylation as a novel control mechanism of peptidoglycan hydrolase activity

Rolain, T., Bernard, E., Beaussart, A., Degand, H., Courtin, P., Egge-Jacobsen, W., Bron, P. A., Morsomme, P., Kleerebezem, M., Chapot-Chartier, M. P., Dufrêne, Y. F. & Hols, P., 2013, In : Journal of Biological Chemistry. 288, 31, p. 22233-22247

Research output: Contribution to journalArticleAcademicpeer-review

26 Citations (Scopus)

Omics approaches to study host-microbiota interactions

van Baarlen, P., Kleerebezem, M. & Wells, J., 2013, In : Current Opinion in Microbiology. 16, 3, p. 270-277

Research output: Contribution to journalArticleAcademicpeer-review

18 Citations (Scopus)

On the ecosystemic network of saliva in healthy young adults

Zaura, E., Brandt, B. W., Prodan, A., Teixeira De Mattos, M. J., Imangaliyev, S., Kool, J., Buijs, M. J., Jagers, F. L. P. W., Hennequin-Hoenderdos, N. L., Slot, D. E., Fernandez Gutierrez, M. & Kleerebezem, M., 1 May 2017, In : ISME Journal. 11, 5, p. 1218-1231

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
36 Citations (Scopus)
Open Access
16 Citations (Scopus)

Oral cholera vaccination promotes homing of IgA+ memory B cells to the large intestine and the respiratory tract

van Splunter, M., van Hoffen, E., Floris-Vollenbroek, E. G., Timmerman, H., van de Bos, E. L., Meijer, B., Ulfman, L. H., Witteman, B., Wells, J. M., Brugman, S., Savelkoul, H. F. J. & van Neerven, R. J. J., 2018, In : Mucosal Immunology. 11, 4, p. 1254-1264

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Oxygen relieves the CO2 and acetate dependency of Lactobacillus johnsonii NCC 533

Hertzberger, R. Y., Pridmore, R. D., Gysler, C., Kleerebezem, M. & Teixeira de Mattos, M. J., 2013, In : PLoS ONE. 8, 2, 8 p., e57235.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
16 Citations (Scopus)
Open Access
1 Citation (Scopus)

Perspective: Fundamental limitations of the randomized controlled trial method in nutritional research: The example of probiotics

Zeilstra, D., Younes, J. A., Brummer, R. J. & Kleerebezem, M., Sep 2018, In : Advances in Nutrition. 9, 5, p. 561-571

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
12 Citations (Scopus)

Phylogenetic analyses and antimicrobial resistance profiles of Campylobacter spp. from diarrhoeal patients and chickens in Botswana

De Vries, S. P. W., Vurayai, M., Holmes, M., Gupta, S., Bateman, M., Goldfarb, D., Maskell, D. J., Matsheka, M. I. & Grant, A. J., 1 Mar 2018, In : PLoS ONE. 13, 3, e0194481.

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Open Access
6 Citations (Scopus)

Physiological and cell morphology adaptation of Bacillus subtilis at near-zero specific growth rates: a transcriptome analysis

Overkamp, W., Ercan, O., Herber, M., van Maris, A. J., Kleerebezem, M. & Kuipers, O. P., 2015, In : Environmental Microbiology. 17, 2, p. 346-363

Research output: Contribution to journalArticleAcademicpeer-review

14 Citations (Scopus)

Physiological and transcriptional responses of different industrial microbes at near-zero specific growth rates

Ercan, O., Bisschops, M. M. M., Overkamp, W., Jørgensen, T. R., Ram, A. F., Smid, E. J., Pronk, J. T., Kuipers, O. P., Daran-Lapujade, P. & Kleerebezem, M., 2015, In : Applied and Environmental Microbiology. 81, 17, p. 5662-5670

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
19 Citations (Scopus)

Pili-like proteins of Akkermansia muciniphila modulate host immune responses and gut barrier function

Ottman, N., Reunanen, J., Meijerink, M., Pietila, T. E., Kainulainen, V., Klievink, J., Huuskonen, L., Aalvink, S., Skurnik, M., Boeren, S., Satokari, R., Mercenier, A., Palva, A., Smidt, H., de Vos, W. M. & Belzer, C., 2017, In : PLoS ONE. 12, 3, e0173004.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
70 Citations (Scopus)

Plasma Proteome Profiles Associated with Diet-Induced Metabolic Syndrome and the Early Onset of Metabolic Syndrome in a Pig Model

te Pas, M. F. W., Koopmans, S. J., Kruijt, L., Calus, M. P. L. & Smits, M. A., 2013, In : PLoS ONE. 8, 9, 8 p., e73087.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
12 Citations (Scopus)

Plasmid Complement of Lactococcus lactis NCDO712 Reveals a Novel Pilus Gene Cluster

Tarazanova, M., Beerthuyzen, M., Siezen, R., Fernandez Gutierrez, M., de Jong, A., van der Meulen, S., Kok, J. & Bachmann, H., 2016, In : PLoS ONE. 11, 12, e0167970.

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Open Access
7 Citations (Scopus)

Pleiotropic effects of polymorphism of the gene diacylglycerol-O-transferase 1 (DGAT1) in the mammary gland tissue of dairy cows

Mach Casellas, N., Blum, Y., Bannink, A., Causeur, D., Houee-Bigot, M., Lagarrigue, S. & Smits, M. A., 2012, In : Journal of Dairy Science. 95, 9, p. 4989-5000

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Open Access
11 Citations (Scopus)

Polyphenols and Tryptophan Metabolites Activate the Aryl Hydrocarbon Receptor in an in vitro Model of Colonic Fermentation

Koper, J. E. B., Loonen, L. M. P., Wells, J. M., Troise, A. D., Capuano, E. & Fogliano, V., 1 Feb 2019, In : Molecular Nutrition and Food Research. 63, 3, 1800722.

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Open Access
7 Citations (Scopus)