Datasets
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Vectorial secretion of interleukin-8 (IL-8 or CXCL8) mediates homeostatic effects on the intestinal epithelium via apically located CXCR1
van Baarlen, P. (Creator), Rossi, O. (Creator), Wells, J. (Creator), Wageningen University, 28 Jun 2014
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30364
Dataset
Carbohydrates Regulate Virulence Gene Expression in Streptococcus suis
van Baarlen, P. (Creator), Ferrando, L. (Creator), Piga, R. (Creator), Bongers, R. (Creator), Wels, M. (Creator), Wageningen University, 18 Mar 2014
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40658
Dataset
The dynamic transcriptome of natural competence in Streptococcus suis
van Baarlen, P. (Creator), Zaccaria, E. (Creator), Wels, M. (Creator), Wageningen University, 9 Feb 2017
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE74507
Dataset
Mining microbial metatranscriptomes for expression of antibiotic resistance genes under natural conditions
Versluis, D. (Creator), D'Andrea, M. M. (Creator), Ramiro Garcia, J. (Creator), Leimena, M. M. (Creator), Hugenholtz, F. (Creator), Zhang, J. (Creator), Ozturk, B. (Creator), Nylund, L. (Creator), Sipkema, D. (Creator), van Schaik, W. (Creator), de Vos, W. (Creator), Kleerebezem, M. (Creator), Smidt, H. (Creator), van Passel, M. W. J. (Creator), Wageningen University, 29 Jan 2016
https://www.ebi.ac.uk/ena/data/view/PRJEB7599
Dataset
Rothia nasimurium strain:PT-32 Genome sequencing and assembly
Gaiser, R. A. (Creator), Medema, M. (Creator), Kleerebezem, M. (Creator), van Baarlen, P. (Creator), Wells, J. (Creator), Wageningen University, 3 Sep 2016
http://www.ebi.ac.uk/ena/data/view/PRJNA321506
Dataset
16S rRNA (gene) based barcoded Illumina sequencing of the microbiota in ileal and colonic luminal content of Ercc1-/Δ7 mice after 10 weeks of Akkermansia muciniphila supplementation
van der Lugt, B. (Creator), van Beek, A. A. (Creator), Aalvink, S. (Creator), Meijer, B. (Creator), Sovran, B. (Creator), Vermeij, W. P. (Creator), Brandt, R. M. C. (Creator), de Vos, W. (Creator), Savelkoul, H. (Creator), Steegenga, W. (Creator), Belzer, C. (Creator), Wageningen University, 5 Mar 2019
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA525606
Dataset
Aging-induced decline in mucus thickness in mice is associated with changes in microbiota composition and immunity and is sex dependent
Elderman, M. (Creator), Sovran, B. (Creator), Hugenholtz, F. (Creator), Graversen, K. (Creator), Huijskes, M. (Creator), Houtsma, E. (Creator), Belzer, C. (Creator), Boekschoten, M. (Creator), de Vos, P. (Creator), Dekker, J. (Creator), Wells, J. (Creator), Faas, M. M. (Creator), Wageningen University, 28 Aug 2017
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE94515
Dataset
Gender and strain dependent differences in intestinal immunology correlate with differences in microbiota composition (colon)
Elderman, M. (Creator), Hugenholtz, F. (Creator), Belzer, C. (Creator), Boekschoten, M. (Creator), van Beek, A. A. (Creator), de Haan, B. J. (Creator), Savelkoul, H. (Creator), de Vos, P. (Creator), Faas, M. M. (Creator), Wageningen University, 27 Jun 2018
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE85911
Dataset
Identification of the core gene-regulatory network that governs the dynamic adaptation of intestinal homeostasis during conventionalization in mice
El Aidy, S. (Creator), van Baarlen, P. (Creator), Hooiveld, G. (Creator), Kleerebezem, M. (Creator), Wageningen University, 11 Jul 2012
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32513
Dataset
Data and analysis of diet-induced and obesity-associated alterations of gut microbiota of 129S6/Sv and C57BL/6J mice
Xiao, L. (Creator), Sonne, S. B. (Creator), Feng, Q. (Creator), Chen, N. (Creator), Xia, Z. (Creator), Li, X. (Creator), Fang, Z. (Creator), Fjære, E. (Creator), Derrien, M. M. N. (Creator), Hugenholtz, F. (Creator), Kleerebezem, M. (Creator), 25 Jan 2017
DOI: 10.5524/100271, https://www.ebi.ac.uk/ena/data/view/PRJEB10308
Dataset
Ileal expression data of mice fed with diet containing protein from various sources
Kar, S. (Creator), Hooiveld, G. (Creator), Schokker, D. (Creator), WUR, 24 Aug 2016
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84442
Dataset
C. fulvum Avr2
Thomma, B. (Creator), van Esse, P. (Creator), van Baarlen, P. (Creator), Wageningen University, 2 Oct 2008
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10801
Dataset
Sequencing the bacterial metatranscriptome associated with the marine sponge Crambe crambe
Versluis, D. (Creator), D'Andrea, M. M. (Creator), Ramiro Garcia, J. (Creator), Leimena, M. M. (Creator), Hugenholtz, F. (Creator), Zhang, J. (Creator), Ozturk, B. (Creator), Nylund, L. (Creator), Sipkema, D. (Creator), van Schaik, W. (Creator), de Vos, W. (Creator), Kleerebezem, M. (Creator), Smidt, H. (Creator), van Passel, M. W. J. (Creator), Wageningen University, 7 Dec 2015
https://www.ebi.ac.uk/ena/data/view/PRJEB7474
Dataset
Mucosal responses of healthy humans to three different probiotic Lactobacillus bacteria
van Baarlen, P. (Creator), Kleerebezem, M. (Creator), Brummer, R. M. (Creator), van der Meer, C. (Creator), Hooiveld, G. (Creator), Troost, F. J. (Creator), Boekschoten, M. (Creator), Wageningen University, 8 Sep 2010
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE18741
Dataset
Effects of digested onion extracts on intestinal gene expression using rat intestine slices
de Wit, N. (Creator), Hulst, M. (Creator), Govers, C. (Creator), van der Meulen, J. (Creator), van Hoef, A. M. A. (Creator), Stoopen, G. (Creator), Hamers, A. (Creator), Hoekman, A. J. W. (Creator), de Vos, R. (Creator), Bovee, T. (Creator), Smits, M. A. (Creator), Mes, J. (Creator), Hendriksen, P. (Creator), Wageningen University & Research, 10 Jul 2016
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84179
Dataset
Pure epicatechin and inflammatory gene expression profiles in circulating immune cells in (pre) hypertensive adults; a randomized double-blind, placebo-controlled, crossover trial
Esser, D. (Creator), Dower, J. I. (Creator), Matualatupauw, J. C. (Creator), Geleijnse, M. (Creator), Kromhout, D. (Creator), Hollman, P. C. H. (Creator), Afman, L. (Creator), Wageningen University, 25 Apr 2018
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84453
Dataset
Microbiota facilitates dietary heme-induced epithelial hyperproliferation and hyperplasia by breaking the mucus barrier
IJssennagger, N. (Creator), Belzer, C. (Creator), Hooiveld, G. (Creator), Dekker, J. (Creator), Muller, M. (Creator), Kleerebezem, M. (Creator), van der Meer, R. (Creator), Wageningen University, 3 Aug 2015
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40670
Dataset
Pig experiment Sterksel early antibiotics/stress
Schokker, D. (Creator), Vastenhouw, S. (Creator), Smits, M. A. (Creator), Rebel, A. (Creator), Wageningen Livestock Research, 1 Sep 2014
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE53170
Dataset
Genome assembly of E. coli KV7, a BLA-CTX-containing strain isolated from a pig
Bateman, M. D. (Creator), de Vries, S. P. W. (Creator), Gupta, S. (Creator), Guardabassi, L. (Creator), Cavaco, L. M. (Creator), Grant, A. J. (Creator), Holmes, M. A. (Creator), University of Cambridge, 10 Mar 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB19461
Dataset
Mucosal responses of healthy humans to exponentially growing or stationary Lactobacillus plantarum bacteria
van Baarlen, P. (Creator), Kleerebezem, M. (Creator), Brummer, R. M. (Creator), van der Meer, C. (Creator), Hooiveld, G. (Creator), Troost, F. J. (Creator), de Groot, P. (Creator), Wageningen University, 21 Jan 2009
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11355
Dataset
Intestinal development in two divergent chicken lines (X and Y)
Schokker, D. (Creator), Vastenhouw, S. (Creator), Smits, M. (Creator), Rebel, A. (Creator), Wageningen UR, 14 Jan 2016
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65042
Dataset
Effects of digested onion extracts on intestinal gene expression: an interspecies comparison using different intestine models
Hulst, M. (Creator), van der Meulen, J. (Creator), Hoekman, A. J. W. (Creator), Smits, M. A. (Creator), Animal Sciences Group, 16 Sep 2016
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE83908
Dataset
Akkermansia muciniphila ameliorates the age-related decline in colonic mucus thickness and attenuates immune activation in accelerated aging Ercc1-/Δ7 mice
van der Lugt, B. (Creator), Van Beek, A. A. (Creator), Aalvink, S. (Creator), Meijer, B. (Creator), Sovran, B. (Creator), Vermeij, W. P. (Creator), Brandt, R. M. C. (Creator), de Vos, W. (Creator), Savelkoul, H. (Creator), Steegenga, W. (Creator), Belzer, C. (Creator), Wageningen University, 20 Feb 2019
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE126730
Dataset
Gender and strain dependent differences in intestinal immunology correlate with differences in microbiota composition (ileum)
Elderman, M. (Creator), Hugenholtz, F. (Creator), Belzer, C. (Creator), Boekschoten, M. (Creator), van Beek, A. A. (Creator), de Haan, B. J. (Creator), Savelkoul, H. (Creator), de Vos, P. (Creator), Faas, M. M. (Creator), Wageningen University, 27 Jun 2018
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE85912
Dataset
REG3γ-deficient mice have altered mucus distribution and increased mucosal inflammatory responses to the microbiota and enteric pathogens in the ileum
van Baarlen, P. (Creator), Loonen-Jaklofsky, L. (Creator), Wells, J. (Creator), Wageningen University, 6 Jun 2014
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44409
Dataset