Host-Microbe Interactomics

Search results

• Data underlying the publication: ‘Effects of E. coli Nissle 1917 on the Porcine Gut Microbiota and Immune System in Early Life’

  Geervliet, M. (Creator), de Vries, H. (Creator), Jansen, C. (Creator), Rutten, V. (Creator), van Hees, H. M. J. (Creator), Wen, C. (Creator), Skovgaard, K. (Creator), Antonello, G. (Creator), Savelkoul, H. (Creator), Smidt, H. (Creator), Tijhaar, E. (Creator) & Wells, J. (Creator), Wageningen University & Research, 9 Feb 2022

  DOI: 10.4121/15060177

  Dataset

• Compositional profiling of porcine tonsillar microbiota around weaning in relation to abundance of Streptococcus suis

  Gaiser, R. (Creator), Kranenbarg-Stolte, E. (Creator), Boekhorst, J. (Creator), Timmerman, H. (Creator), Kleerebezem, M. (Creator), Wells, J. (Creator) & van Baarlen, P. (Creator), Wageningen University & Research, 7 Apr 2020

  DOI: 10.17026/dans-x8k-kuxs

  Dataset

• Ileal expression data of mice fed with diet containing protein from various sources

  Kar, S. (Creator), Hooiveld, G. (Creator) & Schokker, D. (Creator), Wageningen UR, 24 Aug 2016

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84442

  Dataset

• Genome assembly of E. coli KV7, a BLA-CTX-containing strain isolated from a pig

  Bateman, M. D. (Creator), de Vries, S. P. W. (Creator), Gupta, S. (Creator), Guardabassi, L. (Creator), Cavaco, L. M. (Creator), Grant, A. J. (Creator) & Holmes, M. A. (Creator), University of Cambridge, 10 Mar 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB19461

  Dataset

• Escherichia coli strain:DSM 8711 Genome sequencing and assembly

  Fernandez-Ciruelos, B. (Creator), Potmis, T. (Creator), Solomin, V. (Creator) & Wells, J. M. (Creator), Wageningen University & Research, 7 Feb 2023

  https://www.ncbi.nlm.nih.gov/bioproject/930679

  Dataset

• Transcriptomic analysis of intestinal organoids, derived from pigs divergent in feed efficiency, and their response to Escherichia coli

  Madsen, O. (Creator), Rikkers, R. S. C. (Creator), Wells, J. M. (Creator), Bergsma, R. (Creator), Kar, S. K. (Creator), Taverne, N. (Creator), Taverne-Thiele, A. J. (Creator), Ellen, E. D. (Creator) & Woelders, H. (Creator), Wageningen University & Research, 30 Nov 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB57598

  Dataset

• Biomarker Research in ADHD: the Impact of Nutrition (BRAIN) – 16S data set

  Stobernack, T. (Creator), Frankena, K. (Creator), Rodrigues Pereira, R. (Creator), Schrama, R. P. H. (Creator), van Baarlen, P. (Creator), Kleerebezem, M. (Creator), Pelsser, L. (Creator) & Hontelez, S. (Creator), Wageningen University & Research, 21 Feb 2020

  DOI: 10.17026/dans-xc9-bs98

  Dataset

• Campylobacter jejuni Cas9 is necessary for efficient infection of Caco-2 cells and cell stress induction

  van Baarlen, P. (Creator), Louwen, R. (Creator) & van der Oost, J. (Creator), Wageningen University, 30 Sept 2018

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE89661

  Dataset

• Lifestyle of lactobacillus plantarum in the mouse cecum

  Marco, M. L. (Creator), Peters, T. H. F. (Creator), Bongers, R. S. (Creator), Molenaar, D. (Creator), van Hemert, S. (Creator), Gordon, J. I. (Creator) & Kleerebezem, M. (Creator), Vrije Universiteit Amsterdam, 1 Aug 2008

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11383

  Dataset

• Mucosal responses of healthy humans to exponentially growing or stationary Lactobacillus plantarum bacteria

  van Baarlen, P. (Creator), Kleerebezem, M. (Creator), Brummer, R.-J. M. (Creator), van der Meer, C. (Creator), Hooiveld, G. (Creator), Troost, F. J. (Creator) & de Groot, P. (Creator), Wageningen University, 21 Jan 2009

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11355

  Dataset

• Lactococcus lactis subsp. lactis bv. diacetylactis str. TIFN4 Genome sequencing and assembly

  Erkus, O. (Creator), de Jager, V. C. L. (Creator), Spus, M. (Creator), van Alen-Boerrigter, I. J. (Creator), van Rijswijck, I. M. H. (Creator), Hazelwood, L. (Creator), Janssen, P. W. (Creator), van Hijum, S. A. F. T. (Creator), Kleerebezem, M. (Creator) & Smid, E. J. (Creator), Wageningen University & Research, 21 Aug 2013

  https://www.ncbi.nlm.nih.gov/bioproject/175672

  Dataset

• Carbohydrates Regulate Virulence Gene Expression in Streptococcus suis

  van Baarlen, P. (Creator), Ferrando, L. (Creator), Piga, R. (Creator), Bongers, R. (Creator) & Wels, M. (Creator), Wageningen University, 18 Mar 2014

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40658

  Dataset

• Biomarker Research in ADHD: the Impact of Nutrition (BRAIN) – Metagenomics data set

  Stobernack, T. (Creator), Frankena, K. (Creator), Rodrigues Pereira, R. (Creator), Schrama, R. P. H. (Creator), van Baarlen, P. (Creator), Kleerebezem, M. (Creator), Pelsser, L. (Creator) & Hontelez, S. (Creator), Wageningen University & Research, 14 Feb 2020

  DOI: 10.17026/dans-zzg-cqz8

  Dataset

• REG3γ-deficient mice have altered mucus distribution and increased mucosal inflammatory responses to the microbiota and enteric pathogens in the ileum

  van Baarlen, P. (Creator), Loonen-Jaklofsky, L. (Creator) & Wells, J. (Creator), Wageningen University, 6 Jun 2014

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44409

  Dataset

• Rothia nasimurium strain:PT-32 Genome sequencing and assembly

  Gaiser, R. A. (Creator), Medema, M. H. (Creator), Kleerebezem, M. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University, 3 Sept 2016

  http://www.ebi.ac.uk/ena/data/view/PRJNA321506

  Dataset

• Vectorial secretion of interleukin-8 (IL-8 or CXCL8) mediates homeostatic effects on the intestinal epithelium via apically located CXCR1

  van Baarlen, P. (Creator), Rossi, O. (Creator) & Wells, J. (Creator), Wageningen University, 28 Jun 2014

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30364

  Dataset

• Data and analysis of diet-induced and obesity-associated alterations of gut microbiota of 129S6/Sv and C57BL/6J mice

  Xiao, L. (Creator), Sonne, S. B. (Creator), Feng, Q. (Creator), Chen, N. (Creator), Xia, Z. (Creator), Li, X. (Creator), Fang, Z. (Creator), Fjære, E. (Creator), Derrien, M. M. N. (Creator), Hugenholtz, F. (Creator) & Kleerebezem, M. (Creator), Beijing Genome Institute (BGI), 25 Jan 2017

  DOI: 10.5524/100271, https://www.ebi.ac.uk/ena/data/view/PRJEB10308

  Dataset

• Biomarker Research in ADHD: the Impact of Nutrition (BRAIN) – MultiplexELISA data

  Stobernack, T. (Creator), Frankena, K. (Creator), Rodrigues Pereira, R. (Creator), Schrama, R. P. H. (Creator), van Baarlen, P. (Creator), Kleerebezem, M. (Creator), Pelsser, L. (Creator) & Hontelez, S. (Creator), Wageningen University & Research, 19 Feb 2020

  DOI: 10.17026/dans-23r-sfh8

  Dataset

• Lactococcus cremoris subsp. cremoris TIFN3 Genome sequencing and assembly

  Erkus, O. (Creator), de Jager, V. C. L. (Creator), Spus, M. (Creator), van Alen-Boerrigter, I. J. (Creator), van Rijswijck, I. M. H. (Creator), Hazelwood, L. (Creator), Janssen, P. W. (Creator), van Hijum, S. A. F. T. (Creator), Kleerebezem, M. (Creator) & Smid, E. J. (Creator), Wageningen University & Research, 19 Aug 2013

  https://www.ncbi.nlm.nih.gov/bioproject/175671

  Dataset

• Biomarker Research in ADHD: the Impact of Nutrition (BRAIN) – Behaviour scores

  Stobernack, T. (Creator), Frankena, K. (Creator), Rodrigues Pereira, R. (Creator), Schrama, R. P. H. (Creator), van Baarlen, P. (Creator), Kleerebezem, M. (Creator), Pelsser, L. (Creator) & Hontelez, S. (Creator), Wageningen University & Research, 17 Feb 2020

  DOI: 10.17026/dans-z56-fz75

  Dataset

• Biomarker Research in ADHD: the Impact of Nutrition (BRAIN) – smallRNA data set

  Stobernack, T. (Creator), Frankena, K. (Creator), Rodrigues Pereira, R. (Creator), Schrama, R. P. H. (Creator), van Baarlen, P. (Creator), Kleerebezem, M. (Creator), Pelsser, L. (Creator) & Hontelez, S. (Creator), Wageningen University & Research, 17 Feb 2020

  DOI: 10.17026/dans-zpn-p4ay

  Dataset

• Transcriptome of B. longum NCC 2705 grown on glucose or galactose

  Duboux, S. (Creator), Pruvost, S. (Creator), Joyce, C. (Creator), Bogicevic, B. (Creator), Muller, J. A. (Creator), Mercenier, A. (Creator) & Kleerebezem, M. (Creator), Nestlé, 17 Feb 2023

  https://www.ncbi.nlm.nih.gov/bioproject/936080

  Dataset

• Assessing the impact of diet on the mucosa-adhered microbiomes using comparative analysis of rectal swabs and colon content

  Choudhury, R. (Creator) & Kleerebezem, M. (Creator), Wageningen University & Research, 27 Oct 2021

  https://www.ncbi.nlm.nih.gov/bioproject/775018

  Dataset

• Lactococcus cremoris subsp. cremoris TIFN1 Genome sequencing and assembly

  Erkus, O. (Creator), de Jager, V. C. L. (Creator), Spus, M. (Creator), van Alen-Boerrigter, I. J. (Creator), van Rijswijck, I. M. H. (Creator), Hazelwood, L. (Creator), Janssen, P. W. (Creator), van Hijum, S. A. F. T. (Creator), Kleerebezem, M. (Creator) & Smid, E. J. (Creator), Wageningen University & Research, 19 Aug 2013

  https://www.ncbi.nlm.nih.gov/bioproject/175624

  Dataset

• Coxiella burnetii strain:14160-001 Genome sequencing and assembly

  Kuley, R. (Creator), Kuijt, E. (Creator), Smits, M. A. (Creator), Roest, H. I. J. (Creator), Smith, H. E. (Creator) & Bossers, A. (Creator), Wageningen University & Research, 23 Oct 2017

  https://www.ncbi.nlm.nih.gov/bioproject/312566

  Dataset