VLAG

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• DATA

  Yang, S. (Creator), A. Verhoeff, A. (Creator), W.H. Merkx, D. (Creator), P.M. van Duynhoven, J. (Creator) & Hohlbein, J. (Creator), Wageningen University & Research, 17 Dec 2020

  DOI: 10.5281/zenodo.4271320

  Dataset

• Gene expression profiling in human precision-cut liver slices upon treatment with the FXR agonist obeticholic acid [human]

  IJssennagger, N. (Creator), Janssen, A. (Creator), van Mil, S. (Creator) & Kersten, S. (Creator), Wageningen University, 27 Jan 2016

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76161

  Dataset

• Gene expression profiling in human precision-cut liver slices upon treatment with the FXR agonist obeticholic acid [mouse]

  IJssennagger, N. (Creator), Janssen, A. (Creator), Kersten, S. (Creator) & van Mil, S. W. C. (Creator), Wageningen University, 27 Jan 2016

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76162

  Dataset

• Activation of peroxisome proliferator-activated receptor alpha in human peripheral blood mononuclear cells

  Bouwens, M. (Creator), Afman, L. (Creator) & Muller, M. (Creator), Wageningen University, 6 Jun 2008

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11289

  Dataset

• Fish oil supplementation induces anti-atherogenic gene expression profiles in human blood mononuclear cells

  Bouwens, M. (Creator), Grootte Bromhaar, M. (Creator), Muller, M. (Creator) & Afman, L. (Creator), Wageningen University, 17 Jul 2009

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12375

  Dataset

• Acute effects of different dietary fatty acids on the gene expression profiles of PBMCs of healthy young men

  Bouwens, M. (Creator), Grootte Bromhaar, M. (Creator), Jansen, J. (Creator), Muller, M. (Creator) & Afman, L. (Creator), Wageningen University, 11 Apr 2010

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE13466

  Dataset

• Comparative genomic and physiological analysis of Trichococcus species

  Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, A. H. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. J. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. Z. (Creator), Wageningen University, 10 Apr 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB12705

  Dataset

• Comparative genomic and physiological analysis of Trichococcus species

  Strepis, N. (Creator), Sanchez Andrea, I. (Creator), van Gelder, A. H. (Creator), van Kruistum, H. (Creator), Shapiro, N. (Creator), Kyrpides, N. (Creator), Göker, M. (Creator), Klenk, H. P. (Creator), Schaap, P. J. (Creator), Stams, A. J. M. (Creator) & Machado de Sousa, D. Z. (Creator), Wageningen University, 10 Apr 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB12708

  Dataset

• Microbiota facilitates dietary heme-induced epithelial hyperproliferation and hyperplasia by breaking the mucus barrier

  IJssennagger, N. (Creator), Belzer, C. (Creator), Hooiveld, G. (Creator), Dekker, J. (Creator), Muller, M. (Creator), Kleerebezem, M. (Creator) & van der Meer, R. (Creator), Wageningen University, 3 Aug 2015

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40670

  Dataset

• Akkermansia muciniphila Genome sequencing and assembly

  Ouwerkerk, J. P. (Creator), Tytgat, H. L. P. (Creator), Elzinga, J. (Creator), Koehorst, J. (Creator), Van den Abbeele, P. (Creator), Henrissat, B. (Creator), Gueimonde, M. (Creator), Cani, P. D. (Creator), Van de Wiele, T. (Creator), Belzer, C. (Creator) & de Vos, W. M. (Creator), Wageningen University & Research, 22 Jan 2019

  https://www.ncbi.nlm.nih.gov/bioproject/270907

  Dataset

• The intestinal mycobiome of preterm infants in the first six postnatal weeks determined by ITS2 sequencing

  Henderickx, J. (Creator), de Weerd, H. (Creator), Knol, J. (Creator) & Belzer, C. (Creator), Wageningen University and Research Centre, 28 Jan 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB48004

  Dataset

• Conserved symbiosis between Akkermansia muciniphila and its mammalian host

  Geerlings, S. (Creator), Ouwerkerk, J. (Creator), Koehorst, J. (Creator), Ritari, J. (Creator), Aalvink, S. (Creator), Stecher, B. (Creator), Schaap, P. (Creator), Paulin, L. (Creator), de Vos, W. (Creator) & Belzer, C. (Creator), Wageningen University, 28 Jul 2017

  https://www.ebi.ac.uk/ena/browser/view/PRJEB21068

  Dataset

• Integrative analysis of gut microbiota composition, host colonic gene expression and intraluminal metabolites in aging C57BL/6J mice

  van der Lugt, B. (Creator), Rusli, F. (Creator), Lute, C. (Creator), Lamprakis, A. (Creator), Salazar, E. (Creator), Boekschoten, M. V. (Creator), Hooiveld, G. J. (Creator), Müller, M. (Creator), Vervoort, J. (Creator), Kersten, S. (Creator), Belzer, C. (Creator), Kok, D. E. G. (Creator) & Steegenga, W. T. (Creator), Wageningen University & Research, 17 Apr 2018

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE113257

  Dataset

• Effect of shared information on food behaviour: a holistic approach in Dutch consumers

  da Quinta, N. (Creator), van Kleef, E. (Creator), de Wijk, R. (Creator), Baranda, A. B. (Creator), Piqueras Fiszman, B. (Creator) & van Trijp, H. (Creator), Wageningen University & Research, 18 Jun 2024

  DOI: 10.5281/zenodo.12078449

  Dataset

• Effects of digested onion extracts on intestinal gene expression using rat intestine slices

  de Wit, N. J. W. (Creator), Hulst, M. M. (Creator), Govers, C. C. F. M. (Creator), van der Meulen, J. (Creator), van Hoef, A. M. A. (Creator), Stoopen, G. M. (Creator), Hamers, A. R. M. (Creator), Hoekman, A. J. W. (Creator), de Vos, C. H. (Creator), Bovee, T. F. H. (Creator), Smits, M. A. (Creator), Mes, J. J. (Creator) & Hendriksen, P. J. M. (Creator), Wageningen University & Research, 10 Jul 2016

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84179

  Dataset

• 16S: Modulation of small intestinal microbial composition induced by 2 weeks consumption with 2 fermented milk products; a randomized, exploratory, cross-over, double blind, controlled study in ileostomy patients

  Zaccaria, E. (Creator), Klaassen, T. (Creator), Alleleyn, A. M. E. (Creator), Boekhorst, J. (Creator), Smokvina, T. (Creator), Kleerebezem, M. (Creator) & Troost, F. J. (Creator), Wageningen University & Research, Nov 2021

  DOI: 10.17026/dans-xhw-dhpr

  Dataset

• Biomarkers: Blood biomarkers and proteome response by 2-wks consumption with 2 fermented milk products; a randomized, exploratory, cross-over, double blind, controlled study in ileostomy patients

  Zaccaria, E. (Creator), Klaassen, T. (Creator), Alleleyn, A. M. E. (Creator), Boekhorst, J. (Creator), Smokvina, T. (Creator), Kleerebezem, M. (Creator) & Troost, F. J. (Creator), Wageningen University & Research, 1 Dec 2023

  DOI: 10.17026/dans-xkm-6qks

  Dataset

• Urine metabolites changes induced by 2-wks consumption with 2 fermented milk products; a randomized, exploratory, cross-over, double blind, controlled study in ileostomy patients

  Zaccaria, E. (Creator), Klaassen, T. (Creator), Alleleyn, A. M. E. (Creator), Boekhorst, J. (Creator), Smokvina, T. (Creator), Kleerebezem, M. (Creator) & Troost, F. J. (Creator), Wageningen University & Research, 1 Dec 2023

  DOI: 10.17026/dans-2ad-cx47

  Dataset

• Dietary calcium impacts gut microbiome

  Führen, J. (Creator), Schwalbe, M. (Creator), Boekhorst, J. (Creator), Rosch, C. (Creator), Schols, H. (Creator) & Kleerebezem, M. (Creator), Wageningen University, 1 May 2021

  https://www.ebi.ac.uk/ena/browser/view/PRJEB43382

  Dataset

• Tubulinea 18S ribosomal RNA gene, partial sequence

  Kuiper, M. W. (Creator), Valster, R. M. (Creator), Wullings, B. A. (Creator), Boonstra, H. (Creator), Smidt, H. (Creator) & van der Kooij, D. (Creator), Wageningen University & Research, 7 Sept 2006

  https://www.ncbi.nlm.nih.gov/popset/77701904

  Dataset

• The effects of a novel oral nutritional supplement as compared to standard care on body composition, physical function and skeletal muscle mRNA expression in Dutch older adults with (or at risk of) undernutrition

  Grootswagers, P. (Creator), Smeets, E. (Creator), Oteng, A.-B. (Creator) & de Groot, L. (Creator), Wageningen University, 6 Apr 2021

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE136395

  Dataset

• Annotated genomes used in the publication: Machine learning approaches to predict the plant-associated phenotype of Xanthomonas strains

  Koehorst, J. (Creator), Poncheewin, W. (Creator), Schaap, P. (Creator) & te Molder, D. (Creator), Wageningen University & Research, 8 Jul 2021

  DOI: 10.4121/14546625

  Dataset

• Biomarker Research in ADHD: the Impact of Nutrition (BRAIN) – 16S data set

  Stobernack, T. (Creator), Frankena, K. (Creator), Rodrigues Pereira, R. (Creator), Schrama, R. P. H. (Creator), van Baarlen, P. (Creator), Kleerebezem, M. (Creator), Pelsser, L. (Creator) & Hontelez, S. (Creator), Wageningen University & Research, 21 Feb 2020

  DOI: 10.17026/dans-xc9-bs98

  Dataset

• Rothia nasimurium strain:PT-32 Genome sequencing and assembly

  Gaiser, R. A. (Creator), Medema, M. H. (Creator), Kleerebezem, M. (Creator), van Baarlen, P. (Creator) & Wells, J. M. (Creator), Wageningen University, 3 Sept 2016

  http://www.ebi.ac.uk/ena/data/view/PRJNA321506

  Dataset

• Mixed organisms tryptophan halogenase gene, partial cds

  Öztürk, B. (Creator), de Jaeger, L. (Creator), Smidt, H. (Creator) & Sipkema, D. (Creator), Wageningen University & Research, 24 Oct 2013

  https://www.ncbi.nlm.nih.gov/popset/414448310

  Dataset