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2013
2013

Abiotic and microbiotic factors controlling biofilm formation by thermophilic sporeformers

Zhao, Y., Caspers, M. P. M., Metselaar, K. I., de Boer, P., Roeselers, G., Moezelaar, R., Nierop Groot, M. N., Montijn, R. C., Abee, T. & Kort, R., 2013, In : Applied and Environmental Microbiology. 79, 18, p. 5652-5660

Research output: Contribution to journalArticleAcademicpeer-review

26 Citations (Scopus)

A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets

Leimena, M. M., Ramiro-Garcia, J., Davids, M., van den Bogert, B., Smidt, H., Smid, E. J., te Boekhorst, J., Zoetendal, E. G., Schaap, P. J. & Kleerebezem, M., 2013, In : BMC Genomics. 14, 14 p., 530.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
72 Citations (Scopus)

A novel derivation of a within-batch sampling plan based on a Poisson-gamma model characterising low microbial counts in foods

Gonzalez-Barron, U., Zwietering, M. H. & Butler, F., 2013, In : International Journal of Food Microbiology. 161, 2, p. 84-96

Research output: Contribution to journalArticleAcademicpeer-review

8 Citations (Scopus)

Catalase activity as a biomarker for mild-stress-induced robustness in Bacillus weihenstephanensis

den Besten, H. M. W., Effraimidou, S. & Abee, T., 2013, In : Applied and Environmental Microbiology. 79, 1, p. 57-62

Research output: Contribution to journalArticleAcademicpeer-review

21 Citations (Scopus)

Colocalization and interaction between elongasome and divisome during a preparative cell division phase in Escherichia coli

van der Ploeg, R., Verheul, J., Vischer, N. O. E., Alexeeva, S. V., Hoogendoorn, E., Postma, M., Banzhaf, M., Vollmer, W. & den Blaauwen, T., 2013, In : Molecular Microbiology. 87, 5, p. 1074-1087

Research output: Contribution to journalArticleAcademicpeer-review

63 Citations (Scopus)

Comparative Genomics Analysis of Streptococcus Isolates from the Human Small Intestine Reveals their Adaptation to a Highly Dynamic Ecosystem

van den Bogert, B., te Boekhorst, J., Herrmann, R., Smid, E. J., Zoetendal, E. G. & Kleerebezem, M., 2013, In : PLoS ONE. 8, 12, e83418.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
32 Citations (Scopus)

Complete genome sequence of Anoxybacillus flavithermus TNO-09.006, a thermophilic sporeformer associated with a dairy-processing environment

Caspers, M. P. M., te Boekhorst, J., Abee, T., Siezen, R. J. & Kort, R., 2013, In : Genome Announcements. 1, 1, e00010-13.

Research output: Contribution to journalArticleAcademicpeer-review

14 Citations (Scopus)

Crystal ball - 2013: Bacteriophages shaping microbial communities for good and for bad

Smid, E. J. & Abee, T., 2013, In : Microbial Biotechnology. 6, 1, p. 3-16

Research output: Contribution to journalArticleAcademicpeer-review

Diversity assessment of Listeria monocytogenes biofilm formation: Impact of growth condition, serotype and strain origin

Kadam, S. R., den Besten, H. M. W., van der Veen, S., Zwietering, M. H., Moezelaar, R. & Abee, T., 2013, In : International Journal of Food Microbiology. 165, 3, p. 259-264

Research output: Contribution to journalArticleAcademicpeer-review

96 Citations (Scopus)

Diversity of human small intestinal Streptococcus and Veillonella populations

van den Bogert, B., Erkus, O., te Boekhorst, J., Goffau, M., Smid, E. J., Zoetendal, E. G. & Kleerebezem, M., 2013, In : FEMS microbiology ecology. 85, 2, p. 376-388

Research output: Contribution to journalArticleAcademicpeer-review

71 Citations (Scopus)

Draft Genome Sequence of Enterococcus sp. Strain HSIEG1, Isolated from the Human Small Intestine

van den Bogert, B., te Boekhorst, J., Smid, E. J., Zoetendal, E. G. & Kleerebezem, M., 2013, In : Genome Announcements. 1, 6, e01013-13.

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)

Draft Genome Sequence of Veillonella parvula HSIVP1, Isolated from the Human Small Intestine

van den Bogert, B., te Boekhorst, J., Smid, E. J., Zoetendal, E. G. & Kleerebezem, M., 2013, In : Genome Announcements. 1, 6, e00977-13.

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Effect of different Bacillus strains on the profile of organic acids in a liquid culture of Daqu

Yan, Z., Zheng, X., Chen, J. Y., Han, J. S. & Han, B. Z., 2013, In : Journal of the Institute of Brewing. 119, 1-2, p. 78-83

Research output: Contribution to journalArticleAcademicpeer-review

20 Citations (Scopus)

Effect of soybean processing on content and bioaccessibility of folate, vitamin B12 and isoflavones in tofu and tempe

Mo, H., Kariluoto, S., Piironen, V., Zhu, Y., Sanders, M. G., Vincken, J. P., Wolkers-Rooijackers, J. C. M. & Nout, M. J. R., 2013, In : Food Chemistry. 141, 3, p. 2418-2425

Research output: Contribution to journalArticleAcademicpeer-review

38 Citations (Scopus)

Effects of sodium reduction scenarios on fermentation and quality of sauerkraut

Wolkers-Rooijackers, J. C. M., Thomas, S. M. & Nout, M. J. R., 2013, In : Food Science and Technology = Lebensmittel-Wissenschaft und Technologie. 54, 2, p. 383-388

Research output: Contribution to journalArticleAcademicpeer-review

18 Citations (Scopus)

Enhancing the digestibility of cowpea (Vigna unguiculata) by traditional processing and fermentation

Madode, Y. E., Nout, M. J. R., Bakker, E. J., Linnemann, A. R., Hounhouigan, D. J. & van Boekel, M. A. J. S., 2013, In : Food Science and Technology = Lebensmittel-Wissenschaft und Technologie. 54, 1, p. 186-193

Research output: Contribution to journalArticleAcademicpeer-review

11 Citations (Scopus)

Ethno-food knowledge of baobab (Adansonia digitata L.) and characterisation of its traditional fermented novel foods from Benin

Chadare, F. J., Nout, M. J. R. & van Boekel, M. A. J. S., 2013, Proceedings of the Second International Symposium on Underutilized Plant Species: Crops for the Future - Beyond Food Security, Kuala Lumpur, Malaysia, 27 June - 1 July 2011. Massawe, F. (ed.). ISHS, Vol. 979. p. 187-194

Research output: Chapter in Book/Report/Conference proceedingConference paperAcademicpeer-review

Evaluation and optimization of bar-coded amplicon sequencing for the characterization of spoilage microbiota in food products

de Boer, P., Caspers, M. P. M., Sanders, J. W., Kemperman, R., Wijman, J., Lommerse, G., Roeselaars, G., Montijn, R., Abee, T. & Kort, R., 2013, Microbials Spoilers in Food 2013. Mathot, A. G., Postollec, F. & Coroller, L. (eds.). Quimper, p. 45

Research output: Chapter in Book/Report/Conference proceedingAbstract

Fate of Listeria monocytogenes in Gouda microcheese: No growth, and substantial inactivation after extended ripening times

Wemmenhove, E., Stampelou, I., van Hooijdonk, A. C. M., Zwietering, M. H. & Wells-Bennik, M. H. J., 2013, In : International Dairy Journal. 32, 2, p. 192-198

Research output: Contribution to journalArticleAcademicpeer-review

19 Citations (Scopus)

Fermentation characteristics of yeasts isolated from traditionally fermented masau (Ziziphus mauritiana) fruits

Nyanga, L. K., Nout, M. J. R., Smid, E. J., Boekhout, C. & Zwietering, M. H., 2013, In : International Journal of Food Microbiology. 166, 3, p. 426-432

Research output: Contribution to journalArticleAcademicpeer-review

28 Citations (Scopus)

Food safety sampling, risk assessment and regulatory standards: arbitrary or science-based?

Zwietering, M. H., Hielm, S. & Havelaar, A., 2013, In : Journal of Food Protection. 76, Suppl. A, p. 11

Research output: Contribution to journalAbstractAcademic

Growth kinetics of Campylobacter and ESBLs in selective enrichment broths

Hazeleger, W. C., Lu, J., Pinzon Bonilla, P., Jacobs-Reitsma, W. F. & den Besten, H. M. W., 2013, Abstract book 17th International Workshop on Campylobacter, Helicobacter and Related Organisms, CHRO 2013, 15 - 19 September, 2013, Aberdeen, Scotland, UK. p. 156

Research output: Chapter in Book/Report/Conference proceedingAbstract

Impact of sorbic acid and other mild preservation stresses on germination and outgrowth of Bacillus cereus spores

van Melis, C. C. J., 2013, Wageningen: Wageningen University. 138 p.

Research output: Thesisinternal PhD, WU

Open Access

Isolation, quantification and characterization of acid resistant variants of Listeria monocytogenes

Metselaar, K. I., den Besten, H. M. W., Abee, T., Moezelaar, R. & Zwietering, M. H., 2013, the International Conference on Predictive Modelling in Food, Paris, France. Tenenhaus-Aziza, F. & Ellouze, M. (eds.). Paris: CNIEL, IFIP, p. 39-40

Research output: Chapter in Book/Report/Conference proceedingAbstract

Isolation and quantification of highly acid resistant variants of Listeria monocytogenes

Metselaar, K. I., den Besten, H. M. W., Abee, T., Moezelaar, R. & Zwietering, M. H., 2013, In : International Journal of Food Microbiology. 166, 3, p. 508-514

Research output: Contribution to journalArticleAcademicpeer-review

33 Citations (Scopus)

Letter to the Editor: Regarding "The economic efficiency of sampling size: the case of beef trim"

Powell, M. R., Nauta, M., Schaffner, D. & Zwietering, M. H., 2013, In : Risk Analysis. 33, 3, p. 350-352

Research output: Contribution to journalLetterAcademic

1 Citation (Scopus)

Low-water activity foods: increased concern as vehicles of foodborne pathogens

Beuchat, L. R., Komitopoulou, E., Beckers, H., Betts, R. P., Bourdichon, F., Fanning, S., Joosten, H. M. L. J. & ter Kuile, B. H., 2013, In : Journal of Food Protection. 76, 1, p. 150-172

Research output: Contribution to journalArticleAcademicpeer-review

170 Citations (Scopus)

Managing technological aspects of Lupinus mutabilis from a food sovereignty perspective in Ecuador

Carvajal Larenas, F. E., 2013, S.l.. 222 p.

Research output: Thesisinternal PhD, WU

Open Access

Microbe-microbe interactions in mixed culture food fermentations

Smid, E. J. & Lacroix, C., 2013, In : Current Opinion in Biotechnology. 24, 2, p. 148-154

Research output: Contribution to journalArticleAcademicpeer-review

109 Citations (Scopus)

Microbial diversity and dynamics of microbial communities during black-slop soaking of soybeans as determined by PCR-DGGE and molecular cloning

Yan, Y. Z., Wolkers-Rooijackers, J. C. M., Nout, M. J. R. & Han, B. Z., 2013, In : World Journal of Microbiology and Biotechnology. 29, 10, p. 1969-1974

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Modelling of the aqueous debittering process of Lupinus mutabilis Sweet

Carvajal-Larenas, F. E., Nout, M. J. R., van Boekel, M. A. J. S. & Linnemann, A. R., 2013, In : Food Science and Technology = Lebensmittel-Wissenschaft und Technologie. 53, 2, p. 507-516

Research output: Contribution to journalArticleAcademicpeer-review

13 Citations (Scopus)

Monitoring the ecology of Bacillus during Daqu incubation, a fermentation starter, using culture-dependent and culture-independent methods

Zheng, Y., Zheng, X., Han, B. Z., Han, J. S., Nout, M. J. R. & Chen, J. Y., 2013, In : Journal of Microbiology and Biotechnology. 23, 5, p. 614-622

Research output: Contribution to journalArticleAcademicpeer-review

26 Citations (Scopus)

Multifactorial diversity sustains microbial community stability

Erkus, O., de Jager, V. C. L., Spus, M., van Alen-Boerrigter, I. J., van Rijswijck, I. M. H., Hazelwood, L., Janssen, P. W., van Hijum, S. A. F. T., Kleerebezem, M. & Smid, E. J., 2013, In : ISME Journal. 7, 11, p. 2126-2136

Research output: Contribution to journalArticleAcademicpeer-review

82 Citations (Scopus)

Multiple regression model for thermal inactivation of Listeria monocytogenes in liquid food products

Lieverloo, J. H. M., de Roode, M., Fox, M. B., Zwietering, M. H. & Wells-Bennik, M. H. J., 2013, In : Food Control. 29, 2, p. 394-400

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)

Multiple regression model of thermal inactivation of Salmonella enterica serovars in fluids. Significant effects of water activity, sugar and pH

Lieverloo, J. H. M. & Zwietering, M. H., 2013, Conference proceedings 8th International Conference on Predictive Modelling in Food, 16-20 September, 2013, Paris, France. Tenenhaus-Aziza, F. & Ellouze, M. (eds.). CNIEL, IFIP, p. 27-28

Research output: Chapter in Book/Report/Conference proceedingAbstract

Non-conventional yeast species in novel sustainable food fermentation processes: Unravelling the eco-physiological implications of key metabolic pathways

van Rijswijck, I. M. H., de Vries, J., Alkema, W., Abee, T. & Smid, E. J., 2013, Book of Abstracts 4th European Yeast Flavour Workshop Conference,Freising, Germanym 22 - 23 July, 2013. Freising: TUM Biotechnology of Natural Products, p. 36

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Non-essential genes from the hubs of genome scale protein function and environmental gene expression networks in Salmonella enterica serovar Typhimurium

Rosenkrantz, J. T., Aarts, H., Abee, T., Rolfe, M. D., Knudsen, G. M., Nielsen, M. B., Thomsen, L. E., Zwietering, M. H., Olsen, J. E. & Pin, C., 2013, In : BMC Microbiology. 13, 294.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Nutrient composition of selected newly bred and established mung bean varieties

Dahiya, P. K., Linnemann, A. R., Nout, M. J. R., van Boekel, M. A. J. S. & Grewal, R. B., 2013, In : Food Science and Technology = Lebensmittel-Wissenschaft und Technologie. 54, 1, p. 249-256

Research output: Contribution to journalArticleAcademicpeer-review

15 Citations (Scopus)

Nutritive value of masau (Ziziphus mauritiana) fruits from Zambezi Valley in Zimbabwe

Nyanga, L. K., Gadaga, T. H., Nout, M. J. R., Smid, E. J., Boekhout, T. & Zwietering, M. H., 2013, In : Food Chemistry. 138, 1, p. 168-172

Research output: Contribution to journalArticleAcademicpeer-review

30 Citations (Scopus)

Outgrowth heterogeneity of heat treated Bacillus cereus spores

Warda, A. K., Nierop Groot, M. N., den Besten, H. M. W. & Abee, T., 2013, Proceedings of the International Congress of Microbial Spoilers in Food, 01 - 03 July 2013, Quimper, France. Mathot, A. G., Postollec, F. & Coroller, L. (eds.). p. 77

Research output: Chapter in Book/Report/Conference proceedingAbstract

Physiological and transcriptional response of Bacillus cereus treated with low-temperature nitrogen gas plasma

Mols, J. M., Mastwijk, H. C., Nierop Groot, M. N. & Abee, T., 2013, In : Journal of Applied Microbiology. 115, 3, p. 689-702

Research output: Contribution to journalArticleAcademicpeer-review

21 Citations (Scopus)

Population dynamics in an undefined mixed starter culture - the role of bacteriophages

Spus, M., Alexeeva, S. V., Wolkers-Rooijackers, J. C. M., Erkus, O., van Alen, I. & Smid, E. J., 2013, Poster abstracts Summer Conference 2013 of Sociedy for Applied Microbiology, Cardiff, Wales, 04 - 04 July. Society for Applied Microbiology, p. 36-37

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

Open Access

Prediction of Bacillus weihenstephanensis acid resistance: The use of gene expression patterns to select potential biomarkers

Desriac, N., Postollec, F., Coroller, L., Sohier, D., Abee, T. & den Besten, H. M. W., 2013, In : International Journal of Food Microbiology. 167, 1, p. 80-86

Research output: Contribution to journalArticleAcademicpeer-review

8 Citations (Scopus)

Preface

Zwietering, M. H., 2013, Predictive Mycology. Dantigny, P. & Panagou, E. Z. (eds.). New York, p. vii-viii 343 p. (Advances in Food Safety and Food Microbiology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantification of outgrowth heterogeneity of heat-treated Bacillus cereus spores

van Melis, C. C. J., den Besten, H. M. W., Nierop Groot, M. N. & Abee, T., 2013, Microbials Spoilers in Food 2013, 01 - 03 July, 2013, Quimper, France. Mathot, A. G., Postollec, F. & Coroller, L. (eds.). Quimper, p. 86

Research output: Chapter in Book/Report/Conference proceedingAbstract

Quantifying the impact of strain, biological, and experimental variability on the growth kinetics of Listeria monocytogenes as function of pH

Chandra Aryani, D., den Besten, H. M. W., Weenk, G. & Zwietering, M. H., 2013, Conference proceedings 8th International Conference on Predictive Modelling in Food, 16 - 19 September, 2013, Paris, France. Tenenhaus-Aziza, F. & Ellouze, M. (eds.). Paris: CNIEL, IFIP, p. 96

Research output: Chapter in Book/Report/Conference proceedingAbstract

Quantitative physiology of Lactococcus lactis at extreme low-growth rates

Ercan, O., Smid, E. J. & Kleerebezem, M., 2013, In : Environmental Microbiology. 15, 8, p. 2319-2332

Research output: Contribution to journalArticleAcademicpeer-review

13 Citations (Scopus)

Ranking risks posed by composite food products

Stella, P., Cerf, O., Koutsoumanis, K. P., Nguyen-The, C., Sofos, J. N., Valero, A., Zwietering, M. H. & Hugas, M., 2013, Conference proceedings 8th International Conference on Predictive Modelling in Food, Paris, France, 16 - 20 September, 2013. Tenenhaus-Aziza, F. & Ellouze, M. (eds.). Paris: CNIEL, IFIP, p. 191-192

Research output: Chapter in Book/Report/Conference proceedingAbstract