Research Output

2014

Systematic approach in resolving stability of complex starter culture in the context of bacteriophage predation

Spus, M., Wolkers-Rooijackers, J. C. M., Abee, T. & Smid, E. J., 2014, Abstract book 11th International Symposium on Lactic Acid Bacteria. p. C002

Research output: Chapter in Book/Report/Conference proceedingAbstract

The changing world of scientific publication

Zwietering, M. H., 2014, Abstracts IAFP 2014. International Association for Food Protection, Vol. 77. p. 22

Research output: Chapter in Book/Report/Conference proceedingAbstract

The effect of nitrogen limitation on morphology and aroma formation in Pichia fabianii and P. kudriavzevii

van Rijswijck, I. M. H., Dijksterhuis, J., Abee, T. & Smid, E. J., 2014, In : Nederlands Tijdschrift voor Medische Microbiologie. 22, Suppl., p. S113-S113 P075.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

The fate of Listeria monocytogenes in and on Gouda cheese following artificial contamination during brining and artificial contamination of pasteurized cheese milk

Wemmenhove, E., Stampelou, I., Beumer, R. R., van Hooijdonk, A. C. M., Zwietering, M. H. & Wells-Bennik, M. H. J., 2014, Abstract book ICFMH Conference Food Micro. p. 457

Research output: Chapter in Book/Report/Conference proceedingAbstract

The fate of Listeria monocytogenes in brine and on Gouda cheese following artificial contamination during brining

Wemmenhove, E., Beumer, R. R., van Hooijdonk, A. C. M., Zwietering, M. H. & Wells-Bennik, M. H. J., 2014, In : International Dairy Journal. 39, 2, p. 253-258

Research output: Contribution to journalArticleAcademicpeer-review

8 Citations (Scopus)

The impact of selected strains of probiotic bacteria on metabolite formation in set yoghurt

Settachaimongkon, S., Nout, M. J. R., Antunes Fernandes, E. C., van Hooijdonk, A. C. M., Zwietering, M. H., Smid, E. J. & van Valenberg, H. J. F., 2014, In : International Dairy Journal. 38, 1, p. 1-10

Research output: Contribution to journalArticleAcademicpeer-review

23 Citations (Scopus)

The limits of testing for microbiological food safety

Joosten, H. M. L. J., 2014, Wageningen: Wageningen University. 24 p.

Research output: Book/ReportInaugural speechPopular

Open Access

Voedselgevaarlijk keukengerei

Beumer, R. R., 2014

Research output: Non-textual formWeb publication/sitePopular

Open Access
2013

Abiotic and microbiotic factors controlling biofilm formation by thermophilic sporeformers

Zhao, Y., Caspers, M. P. M., Metselaar, K. I., de Boer, P., Roeselers, G., Moezelaar, R., Nierop Groot, M. N., Montijn, R. C., Abee, T. & Kort, R., 2013, In : Applied and Environmental Microbiology. 79, 18, p. 5652-5660

Research output: Contribution to journalArticleAcademicpeer-review

25 Citations (Scopus)

A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets

Leimena, M. M., Ramiro-Garcia, J., Davids, M., van den Bogert, B., Smidt, H., Smid, E. J., te Boekhorst, J., Zoetendal, E. G., Schaap, P. J. & Kleerebezem, M., 2013, In : BMC Genomics. 14, 14 p., 530.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
71 Citations (Scopus)

A novel derivation of a within-batch sampling plan based on a Poisson-gamma model characterising low microbial counts in foods

Gonzalez-Barron, U., Zwietering, M. H. & Butler, F., 2013, In : International Journal of Food Microbiology. 161, 2, p. 84-96

Research output: Contribution to journalArticleAcademicpeer-review

8 Citations (Scopus)

Catalase activity as a biomarker for mild-stress-induced robustness in Bacillus weihenstephanensis

den Besten, H. M. W., Effraimidou, S. & Abee, T., 2013, In : Applied and Environmental Microbiology. 79, 1, p. 57-62

Research output: Contribution to journalArticleAcademicpeer-review

21 Citations (Scopus)

Colocalization and interaction between elongasome and divisome during a preparative cell division phase in Escherichia coli

van der Ploeg, R., Verheul, J., Vischer, N. O. E., Alexeeva, S. V., Hoogendoorn, E., Postma, M., Banzhaf, M., Vollmer, W. & den Blaauwen, T., 2013, In : Molecular Microbiology. 87, 5, p. 1074-1087

Research output: Contribution to journalArticleAcademicpeer-review

61 Citations (Scopus)

Comparative Genomics Analysis of Streptococcus Isolates from the Human Small Intestine Reveals their Adaptation to a Highly Dynamic Ecosystem

van den Bogert, B., te Boekhorst, J., Herrmann, R., Smid, E. J., Zoetendal, E. G. & Kleerebezem, M., 2013, In : PLoS ONE. 8, 12, e83418.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
31 Citations (Scopus)

Complete genome sequence of Anoxybacillus flavithermus TNO-09.006, a thermophilic sporeformer associated with a dairy-processing environment

Caspers, M. P. M., te Boekhorst, J., Abee, T., Siezen, R. J. & Kort, R., 2013, In : Genome Announcements. 1, 1, e00010-13.

Research output: Contribution to journalArticleAcademicpeer-review

14 Citations (Scopus)

Crystal ball - 2013: Bacteriophages shaping microbial communities for good and for bad

Smid, E. J. & Abee, T., 2013, In : Microbial Biotechnology. 6, 1, p. 3-16

Research output: Contribution to journalArticleAcademicpeer-review

Diversity assessment of Listeria monocytogenes biofilm formation: Impact of growth condition, serotype and strain origin

Kadam, S. R., den Besten, H. M. W., van der Veen, S., Zwietering, M. H., Moezelaar, R. & Abee, T., 2013, In : International Journal of Food Microbiology. 165, 3, p. 259-264

Research output: Contribution to journalArticleAcademicpeer-review

82 Citations (Scopus)

Diversity of human small intestinal Streptococcus and Veillonella populations

van den Bogert, B., Erkus, O., te Boekhorst, J., Goffau, M., Smid, E. J., Zoetendal, E. G. & Kleerebezem, M., 2013, In : FEMS microbiology ecology. 85, 2, p. 376-388

Research output: Contribution to journalArticleAcademicpeer-review

67 Citations (Scopus)

Draft Genome Sequence of Enterococcus sp. Strain HSIEG1, Isolated from the Human Small Intestine

van den Bogert, B., te Boekhorst, J., Smid, E. J., Zoetendal, E. G. & Kleerebezem, M., 2013, In : Genome Announcements. 1, 6, e01013-13.

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Draft Genome Sequence of Veillonella parvula HSIVP1, Isolated from the Human Small Intestine

van den Bogert, B., te Boekhorst, J., Smid, E. J., Zoetendal, E. G. & Kleerebezem, M., 2013, In : Genome Announcements. 1, 6, e00977-13.

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Effect of different Bacillus strains on the profile of organic acids in a liquid culture of Daqu

Yan, Z., Zheng, X., Chen, J. Y., Han, J. S. & Han, B. Z., 2013, In : Journal of the Institute of Brewing. 119, 1-2, p. 78-83

Research output: Contribution to journalArticleAcademicpeer-review

18 Citations (Scopus)

Effect of soybean processing on content and bioaccessibility of folate, vitamin B12 and isoflavones in tofu and tempe

Mo, H., Kariluoto, S., Piironen, V., Zhu, Y., Sanders, M. G., Vincken, J. P., Wolkers-Rooijackers, J. C. M. & Nout, M. J. R., 2013, In : Food Chemistry. 141, 3, p. 2418-2425

Research output: Contribution to journalArticleAcademicpeer-review

32 Citations (Scopus)

Effects of sodium reduction scenarios on fermentation and quality of sauerkraut

Wolkers-Rooijackers, J. C. M., Thomas, S. M. & Nout, M. J. R., 2013, In : Food Science and Technology = Lebensmittel-Wissenschaft und Technologie. 54, 2, p. 383-388

Research output: Contribution to journalArticleAcademicpeer-review

16 Citations (Scopus)

Enhancing the digestibility of cowpea (Vigna unguiculata) by traditional processing and fermentation

Madode, Y. E., Nout, M. J. R., Bakker, E. J., Linnemann, A. R., Hounhouigan, D. J. & van Boekel, M. A. J. S., 2013, In : Food Science and Technology = Lebensmittel-Wissenschaft und Technologie. 54, 1, p. 186-193

Research output: Contribution to journalArticleAcademicpeer-review

10 Citations (Scopus)

Ethno-food knowledge of baobab (Adansonia digitata L.) and characterisation of its traditional fermented novel foods from Benin

Chadare, F. J., Nout, M. J. R. & van Boekel, M. A. J. S., 2013, Proceedings of the Second International Symposium on Underutilized Plant Species: Crops for the Future - Beyond Food Security, Kuala Lumpur, Malaysia, 27 June - 1 July 2011. Massawe, F. (ed.). ISHS, Vol. 979. p. 187-194

Research output: Chapter in Book/Report/Conference proceedingConference paper

Evaluation and optimization of bar-coded amplicon sequencing for the characterization of spoilage microbiota in food products

de Boer, P., Caspers, M. P. M., Sanders, J. W., Kemperman, R., Wijman, J., Lommerse, G., Roeselaars, G., Montijn, R., Abee, T. & Kort, R., 2013, Microbials Spoilers in Food 2013. Mathot, A. G., Postollec, F. & Coroller, L. (eds.). Quimper, p. 45

Research output: Chapter in Book/Report/Conference proceedingAbstract

Fate of Listeria monocytogenes in Gouda microcheese: No growth, and substantial inactivation after extended ripening times

Wemmenhove, E., Stampelou, I., van Hooijdonk, A. C. M., Zwietering, M. H. & Wells-Bennik, M. H. J., 2013, In : International Dairy Journal. 32, 2, p. 192-198

Research output: Contribution to journalArticleAcademicpeer-review

18 Citations (Scopus)

Fermentation characteristics of yeasts isolated from traditionally fermented masau (Ziziphus mauritiana) fruits

Nyanga, L. K., Nout, M. J. R., Smid, E. J., Boekhout, C. & Zwietering, M. H., 2013, In : International Journal of Food Microbiology. 166, 3, p. 426-432

Research output: Contribution to journalArticleAcademicpeer-review

21 Citations (Scopus)

Food safety sampling, risk assessment and regulatory standards: arbitrary or science-based?

Zwietering, M. H., Hielm, S. & Havelaar, A., 2013, In : Journal of Food Protection. 76, Suppl. A, p. 11

Research output: Contribution to journalAbstractAcademic

Growth kinetics of Campylobacter and ESBLs in selective enrichment broths

Hazeleger, W. C., Lu, J., Pinzon Bonilla, P., Jacobs-Reitsma, W. F. & den Besten, H. M. W., 2013, Abstract book 17th International Workshop on Campylobacter, Helicobacter and Related Organisms, CHRO 2013, 15 - 19 September, 2013, Aberdeen, Scotland, UK. p. 156

Research output: Chapter in Book/Report/Conference proceedingAbstract

Impact of sorbic acid and other mild preservation stresses on germination and outgrowth of Bacillus cereus spores

van Melis, C. C. J., 2013, Wageningen: Wageningen University. 138 p.

Research output: Thesisinternal PhD, WU

Open Access

Isolation, quantification and characterization of acid resistant variants of Listeria monocytogenes

Metselaar, K. I., den Besten, H. M. W., Abee, T., Moezelaar, R. & Zwietering, M. H., 2013, the International Conference on Predictive Modelling in Food, Paris, France. Tenenhaus-Aziza, F. & Ellouze, M. (eds.). Paris: CNIEL, IFIP, p. 39-40

Research output: Chapter in Book/Report/Conference proceedingAbstract

Isolation and quantification of highly acid resistant variants of Listeria monocytogenes

Metselaar, K. I., den Besten, H. M. W., Abee, T., Moezelaar, R. & Zwietering, M. H., 2013, In : International Journal of Food Microbiology. 166, 3, p. 508-514

Research output: Contribution to journalArticleAcademicpeer-review

28 Citations (Scopus)

Letter to the Editor: Regarding "The economic efficiency of sampling size: the case of beef trim"

Powell, M. R., Nauta, M., Schaffner, D. & Zwietering, M. H., 2013, In : Risk Analysis. 33, 3, p. 350-352

Research output: Contribution to journalLetterAcademic

1 Citation (Scopus)

Low-water activity foods: increased concern as vehicles of foodborne pathogens

Beuchat, L. R., Komitopoulou, E., Beckers, H., Betts, R. P., Bourdichon, F., Fanning, S., Joosten, H. M. L. J. & ter Kuile, B. H., 2013, In : Journal of Food Protection. 76, 1, p. 150-172

Research output: Contribution to journalArticleAcademicpeer-review

146 Citations (Scopus)

Managing technological aspects of Lupinus mutabilis from a food sovereignty perspective in Ecuador

Carvajal Larenas, F. E., 2013, S.l.: s.n.. 222 p.

Research output: Thesisinternal PhD, WU

Open Access

Microbe-microbe interactions in mixed culture food fermentations

Smid, E. J. & Lacroix, C., 2013, In : Current Opinion in Biotechnology. 24, 2, p. 148-154

Research output: Contribution to journalArticleAcademicpeer-review

98 Citations (Scopus)

Microbial diversity and dynamics of microbial communities during black-slop soaking of soybeans as determined by PCR-DGGE and molecular cloning

Yan, Y. Z., Wolkers-Rooijackers, J. C. M., Nout, M. J. R. & Han, B. Z., 2013, In : World Journal of Microbiology and Biotechnology. 29, 10, p. 1969-1974

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Modelling of the aqueous debittering process of Lupinus mutabilis Sweet

Carvajal-Larenas, F. E., Nout, M. J. R., van Boekel, M. A. J. S. & Linnemann, A. R., 2013, In : Food Science and Technology = Lebensmittel-Wissenschaft und Technologie. 53, 2, p. 507-516

Research output: Contribution to journalArticleAcademicpeer-review

11 Citations (Scopus)

Monitoring the ecology of Bacillus during Daqu incubation, a fermentation starter, using culture-dependent and culture-independent methods

Zheng, Y., Zheng, X., Han, B. Z., Han, J. S., Nout, M. J. R. & Chen, J. Y., 2013, In : Journal of Microbiology and Biotechnology. 23, 5, p. 614-622

Research output: Contribution to journalArticleAcademicpeer-review

25 Citations (Scopus)

Multifactorial diversity sustains microbial community stability

Erkus, O., de Jager, V. C. L., Spus, M., van Alen-Boerrigter, I. J., van Rijswijck, I. M. H., Hazelwood, L., Janssen, P. W., van Hijum, S. A. F. T., Kleerebezem, M. & Smid, E. J., 2013, In : ISME Journal. 7, 11, p. 2126-2136

Research output: Contribution to journalArticleAcademicpeer-review

76 Citations (Scopus)

Multiple regression model for thermal inactivation of Listeria monocytogenes in liquid food products

Lieverloo, J. H. M., de Roode, M., Fox, M. B., Zwietering, M. H. & Wells-Bennik, M. H. J., 2013, In : Food Control. 29, 2, p. 394-400

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)

Multiple regression model of thermal inactivation of Salmonella enterica serovars in fluids. Significant effects of water activity, sugar and pH

Lieverloo, J. H. M. & Zwietering, M. H., 2013, Conference proceedings 8th International Conference on Predictive Modelling in Food, 16-20 September, 2013, Paris, France. Tenenhaus-Aziza, F. & Ellouze, M. (eds.). CNIEL, IFIP, p. 27-28

Research output: Chapter in Book/Report/Conference proceedingAbstract

Non-conventional yeast species in novel sustainable food fermentation processes: Unravelling the eco-physiological implications of key metabolic pathways

van Rijswijck, I. M. H., de Vries, J., Alkema, W., Abee, T. & Smid, E. J., 2013, Book of Abstracts 4th European Yeast Flavour Workshop Conference,Freising, Germanym 22 - 23 July, 2013. Freising: TUM Biotechnology of Natural Products, p. 36

Research output: Chapter in Book/Report/Conference proceedingAbstract

Open Access

Non-essential genes from the hubs of genome scale protein function and environmental gene expression networks in Salmonella enterica serovar Typhimurium

Rosenkrantz, J. T., Aarts, H., Abee, T., Rolfe, M. D., Knudsen, G. M., Nielsen, M. B., Thomsen, L. E., Zwietering, M. H., Olsen, J. E. & Pin, C., 2013, In : BMC Microbiology. 13, 294.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Nutrient composition of selected newly bred and established mung bean varieties

Dahiya, P. K., Linnemann, A. R., Nout, M. J. R., van Boekel, M. A. J. S. & Grewal, R. B., 2013, In : Food Science and Technology = Lebensmittel-Wissenschaft und Technologie. 54, 1, p. 249-256

Research output: Contribution to journalArticleAcademicpeer-review

12 Citations (Scopus)

Nutritive value of masau (Ziziphus mauritiana) fruits from Zambezi Valley in Zimbabwe

Nyanga, L. K., Gadaga, T. H., Nout, M. J. R., Smid, E. J., Boekhout, T. & Zwietering, M. H., 2013, In : Food Chemistry. 138, 1, p. 168-172

Research output: Contribution to journalArticleAcademicpeer-review

26 Citations (Scopus)

Outgrowth heterogeneity of heat treated Bacillus cereus spores

Warda, A. K., Nierop Groot, M. N., den Besten, H. M. W. & Abee, T., 2013, Proceedings of the International Congress of Microbial Spoilers in Food, 01 - 03 July 2013, Quimper, France. Mathot, A. G., Postollec, F. & Coroller, L. (eds.). p. 77

Research output: Chapter in Book/Report/Conference proceedingAbstract