Research Output 1955 2020

2020
1 Citation (Scopus)

Bacterial folate biosynthesis and colorectal cancer risk: more than just a gut feeling

Kok, D. E. G., Steegenga, W. T., Smid, E. J., Zoetendal, E. G., Ulrich, C. M. & Kampman, E., Jan 2020, In : Critical Reviews in Food Science and Nutrition. 60, 2, p. 244-256 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Biosynthesis
colorectal neoplasms
Folic Acid
folic acid
Colorectal Neoplasms

Different carbon sources result in differential activation of sigma B and stress resistance in Listeria monocytogenes

Crespo Tapia, N., Dorey, A. L., Gahan, C. G. M., den Besten, H. M. W., O'Byrne, C. P. & Abee, T., 2 May 2020, In : International Journal of Food Microbiology. 320, 108504.

Research output: Contribution to journalArticleAcademicpeer-review

Listeria monocytogenes
Lactose
stress tolerance
lactose
Carbon
Open Access
Cicer
solid state fermentation
protein concentrates
Nutritive Value
sourdough
1 Citation (Scopus)

Evaluation of Multicriteria Decision Analysis Algorithms in Food Safety: A Case Study on Emerging Zoonoses Prioritization

Garre, A., Boué, G., Fernández, P. S., Membré, J. M. & Egea, J. A., Feb 2020, In : Risk Analysis. 40, 2, p. 336-351

Research output: Contribution to journalArticleAcademicpeer-review

Food safety
Decision Support Techniques
Food Safety
Decision theory
Zoonoses

Risk assessment of Clostridium perfringens in Cornish pasties in the UK

Gkogka, E., Reij, M. W., Gorris, L. G. M. & Zwietering, M. H., 1 Feb 2020, In : Food Control. 108, 106822.

Research output: Contribution to journalArticleAcademicpeer-review

Clostridium perfringens
risk assessment
ingredients
probabilistic risk assessment
pathogens
2019
4 Citations (Scopus)
Open Access
Lactobacillus plantarum
Trehalose
pulsed electric fields
Freeze Drying
spray drying

Acetate-ester hydrolase activity for screening of the variation in acetate ester yield of Cyberlindnera fabianii, Pichia kudriavzevii and Saccharomyces cerevisiae

van Rijswijck, I. M. H., Kruis, A. J., Wolkers – Rooijackers, J. C. M., Abee, T. & Smid, E. J., 1 May 2019, In : LWT. 104, p. 8-15

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Pichia
Hydrolases
hydrolases
Saccharomyces cerevisiae
Esters

A European questionnaire-based study on population awareness and risk perception of antimicrobial resistance

Alexa Oniciuc, E. A., Likotrafiti, E., Garre, A., Ruiz, L., Prieto, M. & Alvarez-Ordóñez, A., 1 Sep 2019, In : FEMS Microbiology Letters. 366, 17, fnz221.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Population
Anti-Bacterial Agents
Consumer Organizations
Federal Government
Information Services

Application of a partial cell recycling chemostat for continuous production of aroma compounds at near-zero growth rates

van Mastrigt, O., Egas, R. A., Lillevang, S. K., Abee, T. & Smid, E. J., 25 Mar 2019, In : BMC Research Notes. 12, 1, 173.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chemostats
Recycling
Growth
Biomass
Cheeses

Application of apigeninidin-rich red sorghum biocolorant in a fermented food improves product quality

Akogou, F. U. G., Canoy, T. S., Kayodé, A. P. P., den Besten, H. M. W., Linnemann, A. R. & Fogliano, V., Mar 2019, In : Journal of the Science of Food and Agriculture. 99, 4, p. 2014-2020

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Sorghum
fermented foods
dough
product quality
foods
1 Citation (Scopus)

Aroma formation in retentostat co-cultures of Lactococcus lactis and Leuconostoc mesenteroides

van Mastrigt, O., Egas, R. A., Abee, T. & Smid, E. J., 1 Sep 2019, In : Food Microbiology. 82, p. 151-159 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Leuconostoc mesenteroides
Lactococcus lactis
Cheese
coculture
Coculture Techniques

Bacterial community dynamics in lait caillé, a traditional product of spontaneous fermentation from Senegal

Groenenboom, A. E., Parker, M. E., De Vries, A., de Groot, S., Zobrist, S., Mansen, K., Milani, P., Kort, R., Smid, E. J. & Schoustra, S. E., 10 May 2019, In : PLoS ONE. 14, 5, e0215658.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Senegal
Probiotics
bacterial communities
Fermentation
probiotics
Open Access
Propylene Glycol
Listeria monocytogenes
Propylene Glycols
Growth
Propionates
2 Citations (Scopus)

Delivery of genome editing tools by bacterial extracellular vesicles

Liu, Y., Smid, E. J., Abee, T. & Notebaart, R. A., 1 Jan 2019, In : Microbial Biotechnology. 12, 1, p. 71-73 3 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genes
Ligands
Industrial plants
Molecules
Gene Editing

Development of a low-alcoholic fermented beverage employing cashew apple juice and non-conventional yeasts

Gamero, A., Ren, X., Lamboni, Y., de Jong, C., Smid, E. J. & Linnemann, A. R., 3 Aug 2019, In : Fermentation. 5, 3, 71.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
cashew fruit
Anacardium
Alcoholic Beverages
Beverages
apple juice
1 Citation (Scopus)

Dynamic modelling of brewers’ yeast and Cyberlindnera fabianii co-culture behaviour for steering fermentation performance

van Rijswijck, I. M. H., van Mastrigt, O., Pijffers, G., Wolkers–Rooijackers, J. C. M., Abee, T., Zwietering, M. H. & Smid, E. J., Oct 2019, In : Food Microbiology. 83, p. 113-121

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
brewers yeast
coculture
Coculture Techniques
Fermentation
Saccharomyces cerevisiae
7 Citations (Scopus)

Enzyme promiscuity shapes adaptation to novel growth substrates

Guzmán, G. I., Sandberg, T. E., LaCroix, R. A., Nyerges, Á., Papp, H., de Raad, M., King, Z. A., Hefner, Y., Northen, T. R., Notebaart, R. A., Pál, C., Palsson, B. O., Papp, B. & Feist, A. M., 8 Apr 2019, In : Molecular Systems Biology. 15, 4, p. e8462

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Enzymes
Substrate
metabolism
Metabolism
Substrates

Fermented cereal-based Munkoyo beverage: Processing practices, microbial diversity and aroma compounds

Phiri, S., Schoustra, S. E., van den Heuvel, J., Smid, E. J., Shindano, J. & Linnemann, A., 22 Oct 2019, In : PLoS ONE. 14, 10, e0223501.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Beverages
odor compounds
Fermentation
beverages
bacterial communities

Food safety management strategies based on acceptable risk and risk acceptance

Gkogka, E., 2019, Wageningen: Wageningen University. 283 p.

Research output: Thesisinternal PhD, WU

Open Access
food safety
hazard
public health
pathogen
disability

Guidelines for the design of (optimal) isothermal inactivation experiments

Peñalver-Soto, J. L., Garre, A., Esnoz, A., Fernández, P. S. & Egea, J. A., 1 Dec 2019, In : Food Research International. 126, 108714.

Research output: Contribution to journalArticleAcademicpeer-review

inactivation
Guidelines
Temperature
Information Theory
temperature

Harnessing type I CRISPR–Cas systems for genome engineering in human cells

Cameron, P., Coons, M. M., Klompe, S. E., Lied, A. M., Smith, S. C., Vidal, B., Donohoue, P. D., Rotstein, T., Kohrs, B. W., Nyer, D. B., Kennedy, R., Banh, L. M., Williams, C., Toh, M. S., Irby, M. J., Edwards, L. S., Lin, C. H., Owen, A. L. G., Künne, T., van der Oost, J. & 7 others, Brouns, S. J. J., Slorach, E. M., Fuller, C. K., Gradia, S., Kanner, S. B., May, A. P. & Sternberg, S. H., 18 Dec 2019, In : Nature Biotechnology. 37, p. 1471-1477

Research output: Contribution to journalLetterAcademicpeer-review

Human Engineering
RNA
CRISPR-Associated Proteins
Guide RNA
Genes
6 Citations (Scopus)

Heat resistance of spores of 18 strains of Geobacillus stearothermophilus and impact of culturing conditions

Wells-Bennik, M. H. J., Janssen, P. W. M., Klaus, V., Yang, C., Zwietering, M. H. & Den Besten, H. M. W., 16 Feb 2019, In : International Journal of Food Microbiology. 291, p. 161-172

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Geobacillus stearothermophilus
Spores
heat tolerance
spores
Hot Temperature
3 Citations (Scopus)
Open Access
pulsed electric fields
Fungal Spores
Penicillium
Disinfection
fruit juices

Kringlooplandbouw? Vergeet de dieren niet

Stegeman, A., Zwietering, M. H. & Heederik, D. J. J., 4 Oct 2019, In : De Volkskrant.

Research output: Contribution to journalArticlePopular

Open Access
Vitamin K 2
Lactococcus lactis
Vitamins
Energy Metabolism
Carbon

Microbial communities in a dynamic in vitro model for the human ileum resemble the human ileal microbiota

Stolaki, M., Minekus, M., Venema, K., Lahti, L., Smid, E. J., Kleerebezem, M. & Zoetendal, E. G., 1 Aug 2019, In : FEMS microbiology ecology. 95, 8, fiz096.

Research output: Contribution to journalArticleAcademicpeer-review

Microbiota
Ileum
Ileostomy
microbial community
effluent

Microbial community dynamics in traditionally fermented milk

Groenenboom, A. E., 2019, Wageningen: Wageningen University. 146 p.

Research output: Thesisinternal PhD, WU

fermented milk
microbial communities
fermentation
species diversity
bacterial communities
1 Citation (Scopus)

On the use of in-silico simulations to support experimental design: A case study in microbial inactivation of foods

Garre, A., Peñalver-Soto, J. L., Esnoz, A., Iguaz, A., Fernandez, P. S. & Egea, J. A., 27 Aug 2019, In : PLoS ONE. 14, 8, e0220683.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Microbial Viability
Computer Simulation
Design of experiments
inactivation
Research Design

Product optimization of Zambian traditionally fermented milk - mabisi

Moonga, H. B., 2019, Wageningen: Wageningen University. 115 p.

Research output: Thesisinternal PhD, WU

fermented milk
Tonga
fermentation
microbial communities
Lactococcus
2 Citations (Scopus)

Reprint of: Microbial food safety in the 21st century: Emerging challenges and foodborne pathogenic bacteria

Franz, C. M. A. P., den Besten, H. M. W., Böhnlein, C., Gareis, M., Zwietering, M. H. & Fusco, V., Feb 2019, In : Trends in Food Science and Technology. 84, p. 34-37

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Lactobacillus plantarum
Staining and Labeling
Membranes
Propidium
Electroporation

Risk assessment of Listeria monocytogenes in Gouda cheese

Wemmenhove, E., 2019, Wageningen: Wageningen University. 197 p.

Research output: Thesisinternal PhD, WU

Open Access
Gouda cheese
Listeria monocytogenes
risk assessment
growth retardation
ready-to-eat foods

Robust sampling and preservation of DNA for microbial community profiling in field experiments

Groenenboom, A. E., Smid, E. J. & Schoustra, S. E., 22 Mar 2019, In : BMC Research Notes. 12, 1, 159.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Fermented milk
Sampling
Cultured Milk Products
DNA
Experiments

Spontaneous fermentation of Munkoyo: a cereal-based beverage in Zambia

Phiri, S., 2019, Wageningen: Wageningen University. 112 p.

Research output: Thesisinternal PhD, WU

Zambia
beverages
processing technology
Rhynchosia
lactic acid bacteria

Stressosome-independent activation of SigB regulated genes and prediction of novel SigB-regulated genes in Bacillus subtilis

Yeak, K. Y., Boekhorst, J., Wels, M., Abee, T. & Wells-Bennik, M. H. J., 2019.

Research output: Contribution to conferencePoster

1 Citation (Scopus)

The art of mabisi production: A traditional fermented milk

Moonga, H. B., Schoustra, S. E., Linnemann, A. R., Kuntashula, E., Shindano, J. & Smid, E. J., 14 Mar 2019, In : PLoS ONE. 14, 3, e0213541.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tonga
Fermented milk
fermented milk
arts
Art
2018
4 Citations (Scopus)

Antimicrobial evaluation of red, phytoalexin-rich sorghum food biocolorant

Akogou, F. U. G., Den Besten, H. M. W., Polycarpe Kayodé, A. P., Fogliano, V. & Linnemann, A. R., 1 Mar 2018, In : PLoS ONE. 13, 3, e0194657.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Sorghum
phytoalexins
Sorghum (Poaceae)
Dyeing
Cheeses
3 Citations (Scopus)

Aroma formation during cheese ripening is best resembled by Lactococcus lactis retentostat cultures

van Mastrigt, O., Gallegos Tejeda, D., Kristensen, M. N., Abee, T. & Smid, E. J., 4 Jul 2018, In : Microbial Cell Factories. 17, 1, 104.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cheeses
Lactococcus lactis
Cheese
Flavors
Casein
13 Citations (Scopus)

Cerebral tryptophan metabolism and outcome of tuberculous meningitis: An observational cohort study

van Laarhoven, A., Dian, S., Aguirre-Gamboa, R., Avila-Pacheco, J., Ricaño-Ponce, I., Ruesen, C., Annisa, J., Koeken, V. A. C. M., Chaidir, L., Li, Y., Achmad, T. H., Joosten, L. A. B., Notebaart, R. A., Ruslami, R., Netea, M. G., Verbeek, M. M., Alisjahbana, B., Kumar, V., Clish, C. B., Ganiem, A. R. & 1 others, van Crevel, R., May 2018, In : The Lancet Infectious Diseases. 18, 5, p. 526-535

Research output: Contribution to journalArticleAcademicpeer-review

Meningeal Tuberculosis
Tryptophan
Observational Studies
Cohort Studies
Cerebrospinal Fluid
8 Citations (Scopus)

Citrate, low pH and amino acid limitation induce citrate utilization in Lactococcus lactis biovar diacetylactis

van Mastrigt, O., Mager, E. E., Jamin, C., Abee, T. & Smid, E. J., 1 Mar 2018, In : Microbial Biotechnology. 11, 2, p. 369-380

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Lactococcus lactis
Transcription
Citric Acid
Amino acids
Cells

Contribution of Eat1 and other alcohol acyltransferases to ester production in Saccharomyces cerevisiae

Kruis, A. J., Gallone, B., Jonker, T., Mars, A. E., van Rijswijck, I. M. H., Wolkers-Rooijackers, J. C. M., Smid, E. J., Steensels, J., Verstrepen, K. J., Kengen, S. W. M., van der Oost, J. & Weusthuis, R. A., 21 Dec 2018, In : Frontiers in Microbiology. 9, 11 p., 3202.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Acyltransferases
Saccharomyces cerevisiae
Esters
Transferases
Alcohols
1 Citation (Scopus)

CRISPR-Cas genome engineering of esterase activity in Saccharomyces cerevisiae steers aroma formation

Dank, A., Smid, E. J. & Notebaart, R. A., 27 Sep 2018, In : BMC Research Notes. 11, 1, 682.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
Esterases
Yeast
Saccharomyces cerevisiae
Esters

Dietary microbial exposure assessment in adults from China and the Netherlands

Zhong, Q., Vlieg-Boerstra, B., van Helvoort, A., de Vries, J. H. M. & Zwietering, M. H., 2018.

Research output: Contribution to conferencePosterAcademic

Open Access

Diversity in mutation rates between Listeria monocytogenes isolates exposed to stress

Koomen, J. S., Schubert, P., Mertzanidou, M., Tempelaars, M. H., den Besten, H. M. W. & Abee, T., 2018.

Research output: Contribution to conferencePoster

Open Access
1 Citation (Scopus)

Dynamics in copy numbers of five plasmids of a dairy Lactococcus lactis strain under dairy-related conditions including near-zero growth rates

van Mastrigt, O., Lommers, M. M. A. N., de Vries, Y. C., Abee, T. & Smid, E. J., 1 Jun 2018, In : Applied and Environmental Microbiology. 84, 11, e00314-18.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Lactococcus lactis
plasmid
dairies
plasmids
Plasmids
1 Citation (Scopus)

Editorial: Integration of omics into MRA

Cocolin, L., Membré, J. M. & Zwietering, M., 20 Dec 2018, In : International Journal of Food Microbiology. 287, p. 1-2

Research output: Contribution to journalEditorialAcademic

Effect of thermal and irradiation inactivation on microorganisms in spices and dried herbs

Stratakou, I., den Besten, H. M. W. & Zwietering, M. H., 2018.

Research output: Contribution to conferencePosterAcademic

Open Access
5 Citations (Scopus)

Effects of processing and storage on the stability of the red biocolorant apigeninidin from sorghum

Akogou, F. U. G., Kayodé, A. P. P., den Besten, H. M. W., Linnemann, A. R. & Fogliano, V., 1 Apr 2018, In : LWT - Food Science and Technology. 90, p. 592-597

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Sorghum
Food Handling
industrial applications
food processing
Zea mays
Open Access
lactic acid bacteria
plasmids
odors
citrates
Lactococcus lactis