Datasets
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Comparative transcriptome and phenotype analysis of acid-stressed Bacillus cereus strains
Mols, J. M. (Creator), Wageningen University, 25 Nov 2009
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE13773
Dataset
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Listeria monocytogenes SOS response determined after mitomycin C exposure
van der Veen, S. (Creator), van Schalkwijk, S. (Creator), Molenaar, D. (Creator), de Vos, W. (Creator), Abee, T. (Creator) & Wells-Bennik, M. H. J. (Creator), Wageningen University, 25 Nov 2009
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12634
Dataset
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Phylogenetic footprinting and transcriptome profiling reveal new roles for two Bacillus cereus two-component systems
de Been, M. (Creator), Brillard, J. (Creator), Brousolle, V. (Creator) & Abee, T. (Creator), Wageningen UR, 31 Dec 2014
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE18523
Dataset
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Comparative transcriptome analysis of biofilm and planktonic cells of Bacillus cereus ATCC 10987
Wijman, J. (Creator), Mols, M. (Creator), Tempelaars, M. (Creator) & Abee, T. (Creator), Wageningen UR, 10 Oct 2015
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24620
Dataset
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A novel hybrid kinase is essential for regulating the σB-mediated stress response of Bacillus cereus.
de Been, M. W. H. J. (Creator), Tempelaars, M. (Creator), van Schaik, W. (Creator), Moezelaar, R. (Creator), Siezen, R. J. (Creator) & Abee, T. (Creator), Wageningen UR, 17 Dec 2009
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14589
Dataset
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Bacillus subtilis group type II DNA gyrase subunit A gene, partial cds
Líma, L. J. R. (Creator), van der Velpen, V. (Creator), Wolkers-Rooijackers, J. C. M. (Creator), Kamphuis, H. J. (Creator), Zwietering, M. H. (Creator) & Nout, M. J. R. (Creator), Wageningen University & Research, 29 Mar 2012
https://www.ncbi.nlm.nih.gov/popset/378406282
Dataset
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Bacillaceae 16S ribosomal RNA gene, partial sequence
Líma, L. J. R. (Creator), Kamphuis, H. J. (Creator), Nout, M. J. R. (Creator) & Zwietering, M. H. (Creator), Wageningen University & Research, 7 May 2011
https://www.ncbi.nlm.nih.gov/popset/298569375
Dataset
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Bacillus subtilis subsp. subtilis strain:M1 Genome sequencing and assembly
Líma, L. J. R. (Creator), Kamphuis, H. J. (Creator), Nout, M. J. R. (Creator) & Zwietering, M. H. (Creator), Wageningen University & Research, 16 May 2017
https://www.ncbi.nlm.nih.gov/bioproject/238340
Dataset
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Study of the temporal changes in the bovine udder microbioa of healthy quarters
Winther, A. R. (Creator), Narvhus, J. A. (Creator), Smistad, M. (Creator), Da Silva Duarte, V. (Creator), Bombelli, A. (Creator) & Porcellato, D. (Creator), Norwegian University of Life Sciences, 5 Jan 2022
https://www.ebi.ac.uk/ena/browser/view/PRJEB47169
Dataset
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Genome sequence of the rat gut bacterium Romboutsia ilealis CRIB
Gerritsen, J. (Creator), Timmerman, H. M. (Creator), Fuentes, S. (Creator), van Minnen, L. P. (Creator), Panneman, H. (Creator), Konstantinov, S. R. (Creator), Rombouts, F. M. (Creator), Gooszen, H. G. (Creator), Akkermans, L. M. A. (Creator), Smidt, H. (Creator) & Rijkers, G. T. (Creator), Wageningen University, 31 Mar 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB4727
Dataset
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Microaerobic metabolism of lactate and propionate enhances vitamin B12 production in Propionibacterium freudenreichii
Dank, A. (Creator), Biel, G. (Creator), Abee, T. (Creator) & Smid, E. J. (Creator), Wageningen University, 29 Oct 2022
DOI: 10.6084/m9.figshare.c.6272277
Dataset
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Batch wt vs hyper +_- pABA Normal int_Filtered fg-bg2
Mars, A. (Creator), Faijes, M. (Creator), Molenaar, D. (Creator), de Vos, R. C. (Creator), Klaus, S. M. (Creator), Hanson, A. D. (Creator), de Vos, W. M. (Creator) & Smid, E. J. (Creator), NIZO, 31 May 2008
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE8956
Dataset
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Data Underlying the publication: Characterization of extracellular vesicles from Streptococcus thermophilus 065 and their potential capacity as immune modulators
Ortiz Camargo, A. (Creator), van Mastrigt, O. (Creator), Gouw, J. W. (Creator), Li, Y. (Creator), Bongers, R. S. (Creator), Knol, J. (Creator), van Bergenhenegouwen, J. (Creator), Abee, T. (Creator) & Smid, E. (Creator), Wageningen University & Research, 11 Oct 2024
DOI: 10.4121/9d74337b-f44a-4d68-82db-c3b88662268d
Dataset
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Data underlying analysis of the microbial community composition in the manuscript " The impact of processing technology on microbial community composition and functional properties of Beninese maize ogi"
Sanya, C. (Creator), Linnemann, A. (Creator), Madode, Y. (Creator), Schoustra, S. (Creator) & Smid, E. (Creator), Wageningen University & Research, 7 Feb 2024
DOI: 10.4121/ab7bc46e-e163-4cec-8a5d-6d987025dd3a
Dataset
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6S Bacterial community sequencing Raw sequence reads
Phiri, S. (Creator), Schoustra, S. E. (Creator), van den Heuvel, J. (Creator), Smid, E. J. (Creator), Shindano, J. (Creator) & Linnemann, A. (Creator), Wageningen University & Research, 3 Oct 2019
https://www.ncbi.nlm.nih.gov/bioproject/575741
Dataset
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Data supporting the analysis of sequencing data for identification of lactic acid bacteria (LAB) and yeast species in traditionally fermented maize ogi, part of the research " Traditional maize ogi production and the assessment of selected species for the development of a starter culture "
Sanya, C. (Creator), Schoustra, S. (Creator), Ugale, R. (Creator), Madode, Y. (Creator), Wolkers-Rooijackers, J. (Creator), Linnemann, A. (Creator) & Smid, E. (Creator), Wageningen University & Research, 1 May 2025
DOI: 10.4121/b2cb872d-06c0-4938-8225-a84957efae70
Dataset
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Gene profiling-based phenotyping for identification of cellular parameters that contribute to fitness, stress-tolerance and virulence of Listeria monocytogenes variants
Koomen, J. S. (Creator), den Besten, H. M. W. (Creator), Metselaar, K. I. (Creator), Tempelaars, M. H. (Creator), Wijnands, L. M. (Creator), Zwietering, M. H. (Creator) & Abee, T. (Creator), Wageningen University, 9 Nov 2018
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114672
Dataset
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assessment of Cas9-driven genome editing in presence of DNA oligos in CML cells
Swartjes, T. (Creator), Shang, P. (Creator), Van Den Berg, D. T. M. (Creator), Künne, T. (Creator), Geijsen, N. (Creator), Brouns, S. J. J. (Creator), van der Oost, J. (Creator), Staals, R. H. J. (Creator) & Notebaart, R. A. (Creator), Wageningen University & Research, 13 Jan 2022
https://www.ncbi.nlm.nih.gov/bioproject/796802
Dataset
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Ribosomal mutations enable a switch between high fitness and high stress resistance in Listeria monocytogenes
Koomen, J. (Creator), Ma, X. (Creator), Bombelli, A. (Creator), Tempelaars, M. H. (Creator), Boeren, S. (Creator), Zwietering, M. H. (Creator), den Besten, H. M. W. (Creator) & Abee, T. (Creator), Wageningen University & Research, 27 Oct 2023
https://www.ncbi.nlm.nih.gov/bioproject/1032842
Dataset
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Analysis of germination and outgrowth of sorbic acid-stressed Bacillus cereus ATCC 14579 spores.
van Melis, C. (Creator), Nierop Groot, M. (Creator), Tempelaars, M. (Creator), Moezelaar, R. (Creator) & Abee, T. (Creator), Wageningen University and Research Centre, 1 Nov 2010
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19186
Dataset
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Assessment of CcpA-mediated catabolite control of metabolism and enterotoxin production in Bacillus cereus ATCC 14579
van der Voort, M. (Creator), Kuipers, O. P. (Creator), Buist, G. (Creator), de Vos, W. (Creator) & Abee, T. (Creator), Wageningen UR, 28 Mar 2008
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7843
Dataset
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Lactococcus cremoris subsp. cremoris TIFN7 Genome sequencing and assembly
Erkus, O. (Creator), de Jager, V. C. L. (Creator), Spus, M. (Creator), van Alen-Boerrigter, I. J. (Creator), van Rijswijck, I. M. H. (Creator), Hazelwood, L. (Creator), Janssen, P. W. (Creator), van Hijum, S. A. F. T. (Creator), Kleerebezem, M. (Creator) & Smid, E. J. (Creator), Wageningen University & Research, 19 Aug 2013
https://www.ncbi.nlm.nih.gov/bioproject/175675
Dataset
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Lactococcus cremoris subsp. cremoris TIFN6 Genome sequencing and assembly
Erkus, O. (Creator), de Jager, V. C. L. (Creator), Spus, M. (Creator), van Alen-Boerrigter, I. J. (Creator), van Rijswijck, I. M. H. (Creator), Hazelwood, L. (Creator), Janssen, P. W. (Creator), van Hijum, S. A. F. T. (Creator), Kleerebezem, M. (Creator) & Smid, E. J. (Creator), Wageningen University & Research, 21 Sept 2012
https://www.ncbi.nlm.nih.gov/bioproject/175674
Dataset
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Lactococcus lactis subsp. lactis bv. diacetylactis str. TIFN2 Genome sequencing and assembly
Erkus, O. (Creator), de Jager, V. C. L. (Creator), Spus, M. (Creator), van Alen-Boerrigter, I. J. (Creator), van Rijswijck, I. M. H. (Creator), Hazelwood, L. (Creator), Janssen, P. W. (Creator), van Hijum, S. A. F. T. (Creator), Kleerebezem, M. (Creator) & Smid, E. J. (Creator), Wageningen University & Research, 19 Aug 2013
https://www.ncbi.nlm.nih.gov/bioproject/175670
Dataset
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Monitoring the ethanol stress response of a sigM deletion strain of B. cereus ATCC 14579.
van der Voort, M. (Creator), Wageningen UR, 11 May 2008
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE9856
Dataset