Research Output 1989 2020

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2013
5 Citations (Scopus)

The Flavonoid Pathway in Tomato Seedlings: Transcript Abundance and the Modeling of Metabolite Dynamics

Groenenboom, M., Gomez-Roldan, V., Stigter, J. D., Astola, L., van Daelen, R., Beekwilder, M. J., Bovy, A. G., Hall, R. D. & Molenaar, J., 2013, In : PLoS ONE. 8, 7, 11 p., e68960.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Lycopersicon esculentum
Metabolites
Seedlings
Flavonoids
flavonoids
5 Citations (Scopus)
Open Access
private research
Public-Private Sector Partnerships
public research
Genomics
Life Cycle Stages
42 Citations (Scopus)

The metabolite chemotype of Nicotiana benthamiana transiently expressing artemisinin biosynthetic pathway genes is a function of CYP71AV1 type and relative gene dosage

Ting, H. M., Wang, B., Ryden, A. M., Woittiez, L. S., Verstappen, F. W. A., Ruyter-Spira, C. P., Beekwilder, M. J., Bouwmeester, H. J., van der Krol, A. R. & van Herpen, T. W. J. M., 2013, In : New Phytologist. 199, 2, p. 352-366

Research output: Contribution to journalArticleAcademicpeer-review

gene dosage
artemisinin
Gene Dosage
Nicotiana benthamiana
chemotypes
44 Citations (Scopus)

The methanolic extract of Cordycepts militaris (L.) Link fruiting body shows antioxidant, antibacterial, antifungal and antihuman tumor cell lines properties

Reis, F. S., Barros, L., Calhelha, R. C., Ciric, A., van Griensven, L. J. L. D., Sokovic, M. & Ferreira, I. C. F. R., 2013, In : Food and Chemical Toxicology. 62, p. 91-98

Research output: Contribution to journalArticleAcademicpeer-review

Cordyceps militaris
Cordyceps
fruiting bodies
Tumor Cell Line
Tumors
49 Citations (Scopus)

The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers

Cheng, S., van den Bergh, E., Zeng, P., Zong, X., Hofberger, J., de Bruijn, S. A., Bhide, A. S., Kuelahoglu, C., Bian, C., Chen, J., Fan, G., Kaufmann, K., Hall, J. C., Becker, A., Brautigam, A., Weber, A. P. M., Shi, C., Zheng, Z., Li, W., Lv, M. & 8 others, Tao, Y., Wang, M., Zou, H., Quan, Z., Hibberd, J. M., Zhang, G., Zhu, X. & Schranz, M. E., 2013, In : The Plant Cell. 25, 8, p. 2813-2830

Research output: Contribution to journalArticleAcademicpeer-review

reproductive traits
Brassicaceae
Genome
genome
Brassica
34 Citations (Scopus)

The Tip of the ‘‘Celiac Iceberg’’ in China: A Systematic Review and meta-Analysis

Yuan, J., Gao, J., Li, X., Liu, F., Wijmenga, C., Chen, H. & Gilissen, L. J. W. J., 2013, In : PLoS ONE. 8, 12, 14 p., e81151.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
icebergs
Ice Cover
systematic review
meta-analysis
celiac disease
35 Citations (Scopus)

Tomato breeding in the genomics era: insights from a SNP array

Víquez-Zamora, M., Vosman, B., van Geest, H., Bovy, A. G., Visser, R. G. F., Finkers, H. J. & van Heusden, A. W., 2013, In : BMC Genomics. 14, 28 p., 354.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Lycopersicon esculentum
Genomics
Breeding
Single Nucleotide Polymorphism
Genetic Linkage
13 Citations (Scopus)

Transfer of knowledge about flowering and vegetative propagation from model species to bulbous plants

Leeggangers, H. A. C. F., Moreno Pachón, N. M., Gude, H. & Immink, G. H., 2013, In : International Journal of Developmental Biology. 57, 6-8, p. 611-620

Research output: Contribution to journalArticleAcademicpeer-review

Genes
RNA Sequence Analysis
Plant Genome
Biological Phenomena
Plant Genes

Van haver tot gort

Wisman, R. & Gilissen, L. J. W. J., 2013, In : gezondnu. 3, p. 52-57

Research output: Contribution to journalArticleProfessional

2012
7 Citations (Scopus)

2-D DIGE analysis of UV-C radiation-responsive proteins in globe artichoke leaves

Falvo, S., Di Carli, M., Desiderio, A., Benvenuto, E., Moglia, A., America, A. H. P., Lanteri, S. & Acquadro, A., 2012, In : Proteomics. 12, 3, p. 448-460

Research output: Contribution to journalArticleAcademicpeer-review

Cynara scolymus
Electrophoresis
Gels
Radiation
Protein C
27 Citations (Scopus)

A complex of genes involved in adaptation of Leptinotarsa decemlineata larvae to induced potato defence

Petek, M., Turnšek, N., Gašparic, M. B., Novak, M. P., Gruden, K., Slapar, N., Popovic, T., Štrukelj, B. & Jongsma, M. A., 2012, In : Archives of Insect Biochemistry and Physiology. 79, 3, p. 153-181

Research output: Contribution to journalArticleAcademicpeer-review

Cysteine Proteases
Leptinotarsa decemlineata
cysteine proteinases
Solanum tuberosum
Larva
24 Citations (Scopus)

Activation of antioxidant response element in mouse primary cortical cultures with sesquiterpene lactones isolated from Tanacetum parthenium

Fischedick, J. T., Standiford, M., Johnson, D. A., de Vos, R. C. H., Todorovic, S., Banjanac, T., Verpoorte, R. & Johnson, J. A., 2012, In : Planta Medica. 78, 16, p. 1725-1730

Research output: Contribution to journalArticleAcademicpeer-review

Tanacetum parthenium
Antioxidant Response Elements
Sesquiterpenes
Lactones
Chemical activation
17 Citations (Scopus)

A fast ethanol assay to detect seed deterioration

Kodde, J., Buckley, W. T., de Groot, C. C., Retiere, M., Víquez Zamora, A. M. & Groot, S. P. C., 2012, In : Seed Science Research. 22, p. 55-62

Research output: Contribution to journalArticleAcademicpeer-review

ethanol production
deterioration
ethanol
assays
seeds
31 Citations (Scopus)

A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties

Callingacion, M. N., Boualaphanh, C., Daygon, V. D., Anacleto, R., Sackville Hamilton, R., Biais, B., Deborde, C., Maucourt, M., Moing, A., Mumm, R., de Vos, C. H., Erban, A., Kopka, J., Hansen, T. H., Laursen, K. H., Schjoerring, J. K., Hall, R. D. & Fitzgerald, M. A., 2012, In : Metabolomics. 8, 5, p. 771-783

Research output: Contribution to journalArticleAcademicpeer-review

Metabolomics
Genomics
Minerals
Nitrogen
Laos

Agrobacterium-mediated Genetic Transformation of Chrysanthemum (Chrysanthemum morifolium Ramat.) with an Aphidicidal Gene, gcs (Gamma-cadinene Synthase)

Valizadeh, M., Kazemitabar, S. K. & Jongsma, M. A., 2012, In : International Journal of Plant Breeding and Genetics. 6, 4, p. 161-181

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chrysanthemum morifolium
Chrysanthemum
genetic transformation
Agrobacterium
kanamycin
133 Citations (Scopus)

Antioxidative activities and chemical characterization of polysaccharide extracts from the widely used mushrooms Ganoderma applanatum, Ganoderma lucidum, Lentinus edodes and Trametes versicolor

Kozarski, M., Klaus, A., Niksic, M., Vrvic, M. M., Todorovic, N., Jakovljevic, D. & van Griensven, L. J. L. D., 2012, In : Journal of Food Composition and Analysis. 26, 1-2, p. 144-153

Research output: Contribution to journalArticleAcademicpeer-review

Ganoderma applanatum
Ganoderma
Shiitake Mushrooms
Reishi
Trametes
140 Citations (Scopus)

Arabidopsis Class I and Class II TCP Transcription Factors Regulate Jasmonic Acid Metabolism and Leaf Development Antagonistically.

Danisman, S., van der Wal, F., Dhondt, S., Waites, R., de Folter, S., Bimbo, A., van Dijk, A. D. J., Muino Acuna, J., Cutri, L., Dornelas, M. C., Angenent, G. C. & Immink, R. G. H., 2012, In : Plant Physiology. 159, 4, p. 1511-1523

Research output: Contribution to journalArticleAcademicpeer-review

leaf development
jasmonic acid
Cell Size
Arabidopsis
Transcription Factors
38 Citations (Scopus)

Association mapping of plant resistance to insects

Kloth, K. J., Thoen, H. P. M., Bouwmeester, H. J., Jongsma, M. A. & Dicke, M., 2012, In : Trends in Plant Science. 17, 5, p. 311-319

Research output: Contribution to journalArticleAcademicpeer-review

chromosome mapping
insects
phenotype
defense mechanisms
herbivores
91 Citations (Scopus)

A translational study “case report” on the small molecule “energy blocker” 3-bromopyruvate (3BP) as a potent anticancer agent: from bench side to bedside

Ko, Y. H., Verhoeven, H. A., Lee, M. J., Corbin, D. J., Vogl, T. J. & Pedersen, P. L., 2012, In : Journal of Bioenergetics and Biomembranes. 44, p. 163-170

Research output: Contribution to journalArticleAcademicpeer-review

Antineoplastic Agents
Neoplasms
Translational Medical Research
Oxidative Phosphorylation
Glycolysis

Beleg valorisatie bij kennisinstellingen

Angenent, G. C., Hall, R. D., Govers, F. & Leone, G. O. M., 2012, In : Onderzoek Nederland. 298, p. 5-5

Research output: Contribution to journalArticleProfessional

30 Citations (Scopus)

Bidirectional Secretions from Glandular Trichomes (AQ1) of Pyrethrum (Tanacetum cinerariifolium) Enable Immunization of Seedlings

Ramirez, A. M., Stoopen, G. M., Menzel, T. R., Gols, R., Bouwmeester, H. J., Dicke, M. & Jongsma, M. A., 2012, In : The Plant Cell. 24, 10, p. 4252-4265

Research output: Contribution to journalArticleAcademicpeer-review

Chrysanthemum cinerariifolium
Tanacetum cinerariifolium
Tanacetum
Trichomes
Pyrethrins
97 Citations (Scopus)

Carotenoid and fatty acid metabolism in nitrogen-starved Dunaliella salina, a unicellular green microalga

Lamers, P. P., Janssen, M., de Vos, R. C. H., Bino, R. J. & Wijffels, R. H., 2012, In : Journal of Biotechnology. 162, 1, p. 21-27

Research output: Contribution to journalArticleAcademicpeer-review

Carotenoids
Fatty acids
Metabolism
Nitrogen
Fatty Acids
28 Citations (Scopus)

Celiac disease T cell epitopes from gamma-gliadins: immunoreactivity depends on the genome of origin, transcript frequency, and flanking protein variation

Salentijn, E. M. J., Mitea, D. C., Goryunova, S. V., van der Meer, I. M., Padioleau, I., Gilissen, L. J. W. J., de Koning, F. & Smulders, M. J. M., 2012, In : BMC Genomics. 13, 23 p., 277.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gliadin
T-Lymphocyte Epitopes
Celiac Disease
Genome
Triticum
253 Citations (Scopus)

Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development

Smaczniak, C., Immink, G. H., Muiño, J. M., Blanvillain, R., Busscher, M., Busscher-Lange, J., Dinh, Q. D., Liu, S., Westphal, A. H., Boeren, S., Parcy, F., Xu, L., Carles, C., Angenent, G. C. & Kaufmann, K., 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 5, p. 1560-1565

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
transcription factors
Arabidopsis
flowering
proteins
in vitro studies
96 Citations (Scopus)

Characterization of SOC1’s Central Role in Flowering by the Identification of Its Upstream and Downstream Regulators1[C][W]

Immink, R. G. H., Posé, D., Ferrario, S. I. T., Ott, F., Kaufmann, K., Valentim, F. L., de Folter, S., van der Wal, F., van Dijk, A. D. J., Schmid, M. & Angenent, G. C., 2012, In : Plant Physiology. 160, 1, p. 433-449

Research output: Contribution to journalArticleAcademicpeer-review

MADS Domain Proteins
Homeodomain Proteins
flowering
Arabidopsis
regulatory sequences
28 Citations (Scopus)

Characterization of the natural variation in Arabidopsis thaliana metabolome by the analysis of metabolic distance

Houshyani Hassanzadeh, B., Kabouw, P., Muth, D., de Vos, R. C. H., Bino, R. J. & Bouwmeester, H. J., 2012, In : Metabolomics. 8, suppl. 1, p. 131-145

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Metabolome
Arabidopsis
Metabolites
Plasticity
Multivariate Analysis
12 Citations (Scopus)

Contribution of the epigenetic mark H3K27me3 to functional divergence after whole genome duplication in Arabidopsis

Berke, L., Sanchez Perez, G. F. & Snel, B., 2012, In : Genome Biology. 13, 10, R94.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Arabidopsis
Epigenomics
epigenetics
Gene Duplication
genome
4 Citations (Scopus)

Correlation of Rutin Accumulation with 3-O-Glucosyl Transferase and Phenylalanine Ammonia-lyase Activities During the Ripening of Tomato Fruit

Capanoglu, E., Beekwilder, J., Matros, A., Boyacioglu, D., Hall, R. D. & Mock, H. P., 2012, In : Plant Foods for Human Nutrition. 67, 4, p. 371-376

Research output: Contribution to journalArticleAcademicpeer-review

Phenylalanine Ammonia-Lyase
Rutin
phenylalanine ammonia-lyase
Lycopersicon esculentum
rutin

De halm in glutenvrije haverketen

Gilissen, L. J. W. J., 2012, In : De Oogst (Gewas en Glas). p. 31 1 p.

Research output: Contribution to journalArticlePopular

168 Citations (Scopus)

De novo production of the flavonoid naringenin in engineered Saccharomyces erevisiae

Koopman, F., Beekwilder, J., Crimi, B., van Houwelingen, A., Hall, R. D., Bosch, H. J., van Maris, A. J. A., Pronk, J. T. & Daran, J. M., 2012, In : Microbial Cell Factories. 11, 155.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Flavonoids
Saccharomyces
Arabidopsis
Yeast
Saccharomyces cerevisiae
144 Citations (Scopus)

De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology

Nijkamp, J. F., van den Broek, M., Datema, E., de Kok, S., Bosman, L., Luttik, M. A., Daran-Lapujade, P., Vongsangnak, W., Nielsen, J., Heijne, W. H. M., Klaassen, P., Paddon, C. J., Platt, D., Kotter, P., van Ham, R. C. H. J., Reinders, M. J. T., Pronk, J. T., de Ridder, D. & Daran, J. M., 2012, In : Microbial Cell Factories. 11, 36.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Biotechnology
Yeast
Saccharomyces cerevisiae
Genes
Genome

De ontwikkeling van hypoallergene appelrassen

van der Meer, I. M., van de Weg, W. E., van der Maas, M. P., Schenk, M. F., Smulders, M. J. M. & Gilissen, L. J. W. J., 2012, In : Nederlands Tijdschrift voor Allergie en Astma. 12, 3, p. 106-113

Research output: Contribution to journalArticleProfessional

10 Citations (Scopus)

"Design and application of a data-independent precursor and product ion repository."

Thalassinos, K., Vissers, J. P., Tenzer, S., Levin, Y., Thompson, J. W., Daniel, D., Mann, D., Delong, M. R., Moseley, M. A., America, A. H. P., Ottens, A. K., Cavey, G. S., Efstathiou, G., Scrivens, J. H., Langridge, J. I. & Geromanos, S. J., 2012, In : Journal of the American Society for Mass Spectrometry. 23, 10, p. 1808-1820

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Ions
Peptides
Ionization
Complement System Proteins
Proteins
227 Citations (Scopus)

Developmental and evolutionary diversity of plant MADS-domain factors: insights from recent studies

Smaczniak, C., Immink, R. G. H., Angenent, G. C. & Kaufmann, K., 2012, In : Development. 139, p. 3081-3098

Research output: Contribution to journalArticleAcademicpeer-review

MADS Domain Proteins
Genes
Arabidopsis
Chromatin
Transcription Factors
136 Citations (Scopus)

Dual disease resistance mediated by the immune receptor Cf-2 in tomato requires a common virulence target of a fungus and a nematode

Lozano, J., Wilbers, R. H. P., Gawronski, P., Boshoven, J. C., Finkers-Tomczak, A. M., Cordewener, J. H. G., America, A. H. P., Overmars, H. A., van t Klooster, J. W., Baranowski, L., Sobczak, M., Ilyas, M., van der Hoorn, R. A. L., Schots, A., de Wit, P. J. G. M., Bakker, J., Goverse, A. & Smant, G., 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 25, p. 10119-10124

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
disease resistance
virulence
Nematoda
tomatoes
Solanum pimpinellifolium
45 Citations (Scopus)

Dynamic protein composition of Arabidopsis thaliana cytosolic ribosomes in response to sucrose feeding as revealed by label free MSE proteomics

Hummel, M., Cordewener, J. H. G. C., de Groot, J. C. M., Smeekens, S., America, A. H. P. & Hanson, J., 2012, In : Proteomics. 12, 7, p. 1024-1038

Research output: Contribution to journalArticleAcademicpeer-review

Arabidopsis Proteins
Ribosomal Proteins
Ribosomes
Proteomics
Sucrose

Eerste handelsmissie naar Noord-Korea

Jongsma, M. A., 2012, In : De Volkskrant. p. 12-13 2 p.

Research output: Contribution to journalArticlePopular

41 Citations (Scopus)

Endoplasmic reticulum-quality control chaperones facilitate the biogenesis of cf receptor-like proteins involved in pathogen resistance of tomato

Liebrand, T. W. H., Smit, P., Abd-El-Haliem, A., de Jonge, R., Cordewener, J. H. G., America, A. H. P., Sklenar, J., Jones, A. M., Robatzek, S., Thomma, B. P. H. J., Tameling, W. I. & Joosten, M. H. A. J., 2012, In : Plant Physiology. 159, 4, p. 1819-1833

Research output: Contribution to journalArticleAcademicpeer-review

Lycopersicon esculentum
Endoplasmic Reticulum
Quality Control
endoplasmic reticulum
quality control

Er bloeit iets op met N-Korea

Jongsma, M. A., 2012, In : De Volkskrant. p. 13 1 p.

Research output: Contribution to journalArticlePopular

13 Citations (Scopus)

Expansion of the gamma-gliadin gene family in Aegilops and Triticum

Goryunova, S. V., Salentijn, E. M. J., Chikida, N. N., Kochieva, E. Z., van der Meer, I. M., Gilissen, L. J. W. J. & Smulders, M. J. M., 2012, In : BMC Evolutionary Biology. 12, 12 p., 215.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Aegilops
gliadin
Triticum
Crithopsis
protein
6 Citations (Scopus)

Flow cytometric evaluation of the effects of 3-bromopyruvate (3BP) and dichloracetate (DCA) on THP-1 cells: a multiparameter analysis

Verhoeven, H. A. & van Griensven, L. J. L. D., 2012, In : Journal of Bioenergetics and Biomembranes. 44, 1, p. 91-99

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Membrane Transport Proteins
K562 Cells
Melanoma
Leukemia
bromopyruvate
9 Citations (Scopus)

Functional interactions between members of the REPAT family of insect pathogen-induced proteins

Navarro-Cerrillo, G., Ferré, J., de Maagd, R. A. & Herrero, S., 2012, In : Insect Molecular Biology. 21, 3, p. 335-342

Research output: Contribution to journalArticleAcademicpeer-review

entomopathogens
Bacillus thuringiensis
Insects
midgut
Genes
42 Citations (Scopus)

Genetic analysis of metabolites in apple fruits indicates an mQTL hotspot for phenolic compounds on linkage group 16

Khan, S. A., Chibon, P. Y. F. R. P., de Vos, R. C. H., Schipper, B. A., Walraven, A. E. J., Beekwilder, M. J., van Dijk, T., Finkers, H. J., Visser, R. G. F., van de Weg, W. E., Bovy, A. G., Cestaro, A., Velasco, R., Jacobsen, E. & Schouten, H. J., 2012, In : Journal of Experimental Botany. 63, 8, p. 2895-2908

Research output: Contribution to journalArticleAcademicpeer-review

Quantitative Trait Loci
Malus
linkage groups
genetic techniques and protocols
phenolic compounds
27 Citations (Scopus)

Genetic mapping and characterization of the globe artichoke (+)-germacrene A synthase gene, encoding the first dedicated enzyme for biosynthesis of the bitter sesquiterpene lactone cynaropicrin

Menin, B., Comino, C., Portis, E., Moglia, A., Cankar, K., Bouwmeester, H. J., Lanteri, S. & Beekwilder, M. J., 2012, In : Plant Science. 190, p. 1-8

Research output: Contribution to journalArticleAcademicpeer-review

Cynara scolymus
artichokes
germacrene
Sesquiterpenes
sesquiterpenoid lactones

Gezond glutenvri j: haver veel belovend ingredënt

Gilissen, L. J. W. J., 2012, In : Ingrediënt & Product. 23, 23, p. 10-12

Research output: Contribution to journalArticleProfessional

Graan weerstaat zout met oud gen

Hall, R. D., 2012, In : De Volkskrant. p. 13 1 p.

Research output: Contribution to journalArticlePopular

51 Citations (Scopus)

Gut Microbial Metabolism of Polyphenols from Black Tea and Red Wine/Grape Juice Is Source-Specific and Colon-Region Dependent

van Dorsten, F. A., Peters, S., Gross, G., Gomez-Roldan, V., Klinkenberg, M., de Vos, R., Vaughan, E. E., van Duynhoven, J. P. M., Possemiers, S., van der Wiele, T. & Jacobs, D. M., 2012, In : Journal of Agricultural and Food Chemistry. 60, 45, p. 11331-11342

Research output: Contribution to journalArticleAcademicpeer-review

wine grapes
grape juice
black tea
Wine
Vitis

Haver is voor iedereen goed

Gilissen, L. J. W. J., 2012, In : Metro. 1 p.

Research output: Contribution to journalArticlePopular

Haver uit vergetelheid halen

Gilissen, L. J. W. J., 2012, In : Nieuwe oogst : ledenblad van LTO Noord, editie West. 8, 13, p. 30 1 p.

Research output: Contribution to journalArticleProfessional

Haver – Veelzijdig, gezond, een graansoort om van te houden

Aarsen, T. & Gilissen, L. J. W. J., 2012, In : Glutenvrij. 39, p. 25-27

Research output: Contribution to journalArticlePopular