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Engineering de novo anthocyanin production in Saccharomyces cerevisiae

Levisson, M., Patinios, C., Hein, S., de Groot, P. A., Daran, J. M., Hall, R. D., Martens, S. & Beekwilder, J., 3 Jul 2018, In : Microbial Cell Factories. 17, 1, 103.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
13 Citations (Scopus)

Engineering storage capacity for volatile sesquiterpenes in Nicotiana benthamiana leaves

Delatte, T. L., Scaiola, G., Molenaar, J., de Sousa Farias, K., Alves Gomes Albertti, L., Busscher, J., Verstappen, F., Carollo, C., Bouwmeester, H. & Beekwilder, J., Dec 2018, In : Plant Biotechnology Journal. 16, 12, p. 1997-2006

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Engineering the plant rhizosphere

Zhang, Y., Ruyter-Spira, C. P. & Bouwmeester, H. J., 2015, In : Current Opinion in Biotechnology. 32, p. 136-142

Research output: Contribution to journalArticleAcademicpeer-review

30 Citations (Scopus)

Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map

Kooke, R., Morgado, L. N., Becker, F. F. M., van Eekelen, H. D. L. M., Hazarika, R., Zhang, Q., de Vos, C. H., Johannes, F. & Keurentjes, J. J. B., 2019, In : Genome Research. 29, 1, p. 96-106

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Er bloeit iets op met N-Korea

Jongsma, M. A., 2012, In : De Volkskrant. p. 13 1 p.

Research output: Contribution to journalArticlePopular

Evaluation of Glucosinolate Variation in a Collection of Turnip (Brassica rapa) Germplasm by the Analysis of Intact and Desulfo Glucosinolates

Lee, G. J., Bonnema, G., Zhang, N., Kwak, J. H., de Vos, R. C. H. & Beekwilder, M. J., 2013, In : Journal of Agricultural and Food Chemistry. 61, 16, p. 3984-3993

Research output: Contribution to journalArticleAcademicpeer-review

31 Citations (Scopus)

Evaluation of non-chemical seed treatment methods for control of Alternaria brassicicola on cabbage seeds

Amein, T., Al Wright, S., Wikstrom, M., Koch, E., Schmitt, A., Stephan, D., Jahn, M., Tinivella, F., Gullino, M. L., Forsberg, G., Werner, S., van der Wolf, J. M. & Groot, S. P. C., 2011, In : Journal of Plant Diseases and Protection. 118, 6, p. 214-221

Research output: Contribution to journalArticleAcademicpeer-review

10 Citations (Scopus)

Evaluation of the antigenotoxic effects of the royal sun mushroom, agaricus brasiliensis (Higher basidiomycetes) in human lymphocytes treated with thymol in the comet assay

Radaković, M., Stevanović, J., Soković, M., Radović, D., Van Griensven, L. J. L. D. & Stanimirović, Z., 2015, In : International Journal of Medicinal Mushrooms. 17, 4, p. 321-330

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Evaluation of the bioactive properties of avenanthramide analogs produced in recombinant yeast

Moglia, A., Goitre, L., Gianoglio, S. & Beekwilder, J., 2015, In : BioFactors. 41, 1, p. 15-27

Research output: Contribution to journalArticleAcademicpeer-review

19 Citations (Scopus)
20 Citations (Scopus)

Evidence for RNA recombination between distinct isolates of Pepino mosaic virus.

Hasiów-Jaroszewska, B., Kuzniar, A., Peters, S. A., Leunissen, J. A. M. & Pospieszny, H., 2010, In : Acta Biochimica Polonica. 57, 3, p. 385-388

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Evolution of DNA-Binding Sites of a Floral Master Regulatory Transcription Factor

Muiño, J. M., de Bruijn, S. A., Pajoro, A., Geuten, K., Vingron, M., Angenent, G. C. & Kaufmann, K., 2016, In : Molecular Biology and Evolution. 33, 1, p. 185-200

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Open Access
17 Citations (Scopus)

Expansion of the gamma-gliadin gene family in Aegilops and Triticum

Goryunova, S. V., Salentijn, E. M. J., Chikida, N. N., Kochieva, E. Z., van der Meer, I. M., Gilissen, L. J. W. J. & Smulders, M. J. M., 2012, In : BMC Evolutionary Biology. 12, 12 p., 215.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
13 Citations (Scopus)
150 Citations (Scopus)

Exploring the genomic traits of fungus-feeding bacterial genus Collimonas

Song, C., Schmidt, R., de Jager, V., Krzyzanowska, D., Jongedijk, E., Cankar, K., Beekwilder, J., van Veen, A., de Boer, W., van Veen, J. A. & Garbeva, P., 24 Dec 2015, In : BMC Genomics. 16, 1, 1103.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
23 Citations (Scopus)

Expression of natural human b1,4-GalT1 variants and of non-mammalian homologues in plants leads to differences in galactosylation of N-glycans

Hesselink, T., Rouwendal, G. J. A., Henquet, M. G. L., Florack, D. E. A., Helsper, J. P. F. G. & Bosch, H. J., 2014, In : Transgenic Research. 23, 5, p. 717-728

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)

Expression of the Aspergillus terreus itaconic acid biosynthesis cluster in Aspergillus niger

van der Straat, L., Vernooij, M., Lammers, M., van den Berg, W. A. M., Schonewille, T., Cordewener, J., van der Meer, I., Koops, A. J. & de Graaff, L. H., 2014, In : Microbial Cell Factories. 13, 9 p., 11.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
53 Citations (Scopus)

Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics

Moing, A., Aharoni, A., Biais, B., Rogachev, I., Meir, S., Brodsky, L., Allwood, J. W., Erban, A., Dunn, W. B., Kay, S., Koning, S., de Vos, C. H., Jonker, H. H., Mumm, R., Deborde, C., Maucourt, M., Bernillon, S., Gibon, Y., Hansen, T. H., Husted, S. & 5 others, Goodacre, R., Kopka, J., Schjoerring, J. K., Rolin, D. & Hall, R. D., 2011, In : New Phytologist. 190, 3, p. 683-696

Research output: Contribution to journalArticleAcademicpeer-review

69 Citations (Scopus)

Factors affecting duration of the expulsive stage of parturition and piglet birth intervals in sows with uncomplicated, spontaneous farrowings

van Dijk, A. D. J., van Rens, B. T. T. M., van der Lende, T. & Taverne, M. A. M., 2005, In : Theriogenology. 64, 7, p. 1573-1590

Research output: Contribution to journalArticleAcademicpeer-review

79 Citations (Scopus)

Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

Goodwin, S. B., Ben M'Barek, S., Dhillon, B., Wittenberg, A. H. J., Crane, C. F., Hane, J. K., Foster, A. J., van der Lee, T. A. J., Grimwood, J., Aerts, A., Antoniw, J., Bailey, A., Bluhm, B., Bowler, J., Bristow, J., van der Burgt, A., Canto-Canché, B., Churchill, A. C. L., Conde-Ferràez, L., Cools, H. J. & 37 others, Coutinho, P. M., Csukai, M., Dehal, P., de Wit, P. J. G. M., Donzelli, B., van de Geest, H. C., van Ham, R. C. H. J., Hammond-Kosack, K. E., Henrissat, B., Kilian, A., Kobayashi, A. K., Koopmann, E., Kourmpetis, Y., Kuzniar, A., Lindquist, E., Lombard, V., Maliepaard, C. A., Martins, N., Mehrabi, A., Nap, J. P. H., Ponomarenko, A., Rudd, J. J., Salamov, A., Schmutz, J., Schouten, H. J., Shapiro, H., Stergiopoulos, I., Torriani, S. F. F., Tu, H., de Vries, R. P., Waalwijk, C., Ware, S. B., Wiebenga, A., Zwiers, L. H., Oliver, R. P., Grigoriev, I. V. & Kema, G. H. J., 2011, In : Plos Genetics. 7, 6, 17 p., e1002070.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
305 Citations (Scopus)

First successful reduction of clinical allergenicity of food by genetic modification: Mal d 1 silenced apples cause fewer allergy symptoms than the wild-type cultivar

Dubois, A. E. J., Pagliarani, G., Brouwer, R. M., Kollen, B. J., Dragsted, L. O., Eriksen, F. D., Callesen, O., Gilissen, L. J. W. J., Krens, F. A., Visser, R. G. F., Smulders, M. J. M., Vlieg-Boerstra, B. J., Flokstra-de Blok, B. J. & van de Weg, W. E., 2015, In : Allergy. 70, 11, p. 1406-1412

Research output: Contribution to journalArticleAcademicpeer-review

18 Citations (Scopus)

Flexible, fast and accurate sequence alignment profiling on GPGPU with PaSWAS

Warris, S., Yalcin, F., Jackson, K. J. & Nap, J. P. H., 2015, In : PLoS ONE. 10, 4, 13 p., e0122524.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)

Floral pathway integrator gene expression mediates gradual transmission of environmental and endogenous cues to flowering time

van Dijk, A. D. J. & Molenaar, J., 2017, In : PeerJ. 5, 4, 18 p., e3197.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Flow cytometric evaluation of the effects of 3-bromopyruvate (3BP) and dichloracetate (DCA) on THP-1 cells: a multiparameter analysis

Verhoeven, H. A. & van Griensven, L. J. L. D., 2012, In : Journal of Bioenergetics and Biomembranes. 44, 1, p. 91-99

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

FLOWERING LOCUS C in monocots and the tandem origin of angiosperm specific MADS-box genes

Ruelens, P., de Maagd, R. A., Proost, S., Theissen, G., Geuten, K. & Kaufmann, K., 2013, In : Nature Communications. 4, 2280.

Research output: Contribution to journalArticleAcademicpeer-review

66 Citations (Scopus)

Food processing and breeding strategies for coeliac-safe and healthy wheat products

Jouanin, A., Gilissen, L. J. W. J., Boyd, L. A., Cockram, J., Leigh, F. J., Wallington, E. J., van den Broeck, H. C., van der Meer, I. M., Schaart, J. G., Visser, R. G. F. & Smulders, R., Aug 2018, In : Food Research International. 110, p. 11-21

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
13 Citations (Scopus)

FPLC and liquid-chromatography mass spectrometry identify candidate necrosis-inducing proteins from culture filtrates of the fungal wheat pathogen Zymoseptoria tritici

Ben M'Barek, S., Cordewener, J. H. G., Tabib Ghaffary, M. S., van der Lee, T. A. J., Liu, Z., Mirzadi Gohari, A., Mehrabi, R., America, A. H. P., Friesen, T. L., Hamza, S., Stergiopoulos, I., de Wit, P. J. G. M. & Kema, G. H. J., 2015, In : Fungal Genetics and Biology. 79, p. 54-62

Research output: Contribution to journalArticleAcademicpeer-review

10 Citations (Scopus)

Fruit antioxidants during vinegar processing: Changes in content and in vitro bio-accessibility

Bakir, S., Toydemir, G., Boyacioglu, D., Beekwilder, J. & Capanoglu, E., 2016, In : International Journal of Molecular Sciences. 17, 10, 12 p., 1658.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)

FRUITFULL controls SAUR10 expression and regulates Arabidopsis growth and architecture

Bemer, M., van Mourik, H., Muiño, J. M., Ferrándiz, C., Kaufmann, K. & Angenent, G. C., 15 Jun 2017, In : Journal of Experimental Botany. 68, 13, p. 3391-3403

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
22 Citations (Scopus)
6 Citations (Scopus)

Functional interactions between members of the REPAT family of insect pathogen-induced proteins

Navarro-Cerrillo, G., Ferré, J., de Maagd, R. A. & Herrero, S., 2012, In : Insect Molecular Biology. 21, 3, p. 335-342

Research output: Contribution to journalArticleAcademicpeer-review

11 Citations (Scopus)

Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C

Schmidt, R., de Jager, V., Zühlke, D., Wolff, C., Bernhardt, J., Cankar, K., Beekwilder, J., van IJcken, W., Sleutels, F., de Boer, W., Riedel, K. & Garbeva, P., 2017, In : Scientific Reports. 7, 862.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
22 Citations (Scopus)

Fusarium in the age of genomics

Waalwijk, C., Vanheule, A., Audenaert, K., Zhang, H., Warris, S., van de Geest, H. C. & van der Lee, T. A. J., 2017, In : Tropical Plant Pathology. 42, 3, p. 184-189

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Galactinol as marker for seed longevity

De Souza Vidigal, D., Willems, L. A. J., van Arkel, J., Dekkers, S. J. W., Hilhorst, H. W. M. & Bentsink, L., 2016, In : Plant Science. 246, p. 112-118

Research output: Contribution to journalArticleAcademicpeer-review

18 Citations (Scopus)

Gene and transposable element methylation in great tit (Parus major) brain and blood

Derks, M. F. L., Schachtschneider, K. M., Madsen, O., Schijlen, E. G. W. M., Verhoeven, K. J. F. & van Oers, K., 2016, In : BMC Genomics. 17, 332.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
17 Citations (Scopus)

Gene Ontology consistent protein function prediction: the FALCON algorithm applied to six eukaryotic genomes

Kourmpetis, Y. A. I., van Dijk, A. D. J. & ter Braak, C. J. F., 2013, In : Algorithms for Molecular Biology. 8, 1, 10.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

Genetical genomics of quality related traits in potato tubers using proteomics

Acharjee, A., Chibon, P. Y. F. R. P., Kloosterman, B. A., America, A. H. P., Renaut, J., Maliepaard, C. A. & Visser, R. G. F., 23 Jan 2018, In : BMC Plant Biology. 18, 20.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)

Genetic analysis of metabolites in apple fruits indicates an mQTL hotspot for phenolic compounds on linkage group 16

Khan, S. A., Chibon, P. Y. F. R. P., de Vos, R. C. H., Schipper, B. A., Walraven, A. E. J., Beekwilder, M. J., van Dijk, T., Finkers, H. J., Visser, R. G. F., van de Weg, W. E., Bovy, A. G., Cestaro, A., Velasco, R., Jacobsen, E. & Schouten, H. J., 2012, In : Journal of Experimental Botany. 63, 8, p. 2895-2908

Research output: Contribution to journalArticleAcademicpeer-review

42 Citations (Scopus)

Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping

Thoen, H. P. M., Davila Olivas, N. H., Kloth, K. J., Coolen, S., Huang, P., Aarts, M. G. M., Molenaar, J. A., Bakker, J., Bouwmeester, H. J., Broekgaarden, C., Bucher, J., Busscher-Lange, J., Cheng, X., van Dijk-Fradin, E. F., Jongsma, M. A., Julkowska, M. M., Keurentjes, J. J. B., Ligterink, W., Pieterse, C. M. J., Ruyter-Spira, C. P. & 13 others, Smant, G., van Schaik, C. C., van Wees, S. C. M., Visser, R. G. F., Voorrips, R. E., Vosman, B., Vreugdenhil, D., Warmerdam, S., Wiegers, G. L., van Heerwaarden, J., Kruijer, W. T., van Eeuwijk, F. A. & Dicke, M., 2017, In : New Phytologist. 213, 3, p. 1346-1362

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
53 Citations (Scopus)

Genetic control of meristem arrest and life span in Arabidopsis by a FRUITFULL-APETALA2 pathway

Balanzà, V., Martínez-Fernández, I., Sato, S., Yanofsky, M. F., Kaufmann, K., Angenent, G. C., Bemer, M. & Ferrándiz, C., 8 Feb 2018, In : Nature Communications. 9, 1, 565.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
23 Citations (Scopus)

Genetic mapping and characterization of the globe artichoke (+)-germacrene A synthase gene, encoding the first dedicated enzyme for biosynthesis of the bitter sesquiterpene lactone cynaropicrin

Menin, B., Comino, C., Portis, E., Moglia, A., Cankar, K., Bouwmeester, H. J., Lanteri, S. & Beekwilder, M. J., 2012, In : Plant Science. 190, p. 1-8

Research output: Contribution to journalArticleAcademicpeer-review

27 Citations (Scopus)

Genetic mapping of semi-polar metabolites in pepper fruits (Capsicum sp.): towards unravelling the molecular regulation of flavonoid quantitative trait loci

Wahyuni, Y., Stahl-Hermes, V., Ballester, A. R., de Vos, C. H., Voorrips, R. E., Maharijaya, A., Molthoff, J. W., Víquez Zamora, A. M., Sudarmonowati, E., Arisi, A. C. M., Bino, R. J. & Bovy, A. G., 2014, In : Molecular Breeding. 33, 3, p. 503-518

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
16 Citations (Scopus)

Genetic variation in phytochemicals in leaves of pepper (Capsicum) in relation to thrips resistance

Maharijaya, A., Vosman, B., Pelgrom, K., Wahyuni, Y., de Vos, R. C. H. & Voorrips, R. E., Feb 2019, In : Arthropod-Plant Interactions. 13, 1, p. 1-9

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards

Lind, A. L., Lai, Y. Y. Y., Mostovoy, Y., Holloway, A. K., Iannucci, A., Mak, A. C. Y., Fondi, M., Orlandini, V., Eckalbar, W. L., Milan, M., Rovatsos, M., Kichigin, I. G., Makunin, A. I., Johnson Pokorná, M., Altmanová, M., Trifonov, V. A., Schijlen, E., Kratochvíl, L., Fani, R., Velenský, P. & 10 others, Rehák, I., Patarnello, T., Jessop, T. S., Hicks, J. W., Ryder, O. A., Mendelson, J. R., Ciofi, C., Kwok, P. Y., Pollard, K. S. & Bruneau, B. G., 29 Jul 2019, In : Nature Ecology and Evolution. 3, 8, p. 1241-1252

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Genome sequence and analysis of the tuber crop potato

Xu, X., Pan, S. K., Cheng, S. F., Zhang, B., Bachem, C. W. B., de Boer, J. M., Borm, T. J. A., Kloosterman, B. A., van Eck, H. J., Datema, E., Goverse, A., van Ham, R. C. H. J. & Visser, R. G. F., 2011, In : Nature. 475, p. 189-195

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1055 Citations (Scopus)

Genome-wide association mapping and genomic prediction elucidate the genetic architecture of morphological traits in arabidopsis

Kooke, R., Kruijer, W., Bours, R., Becker, F., Kuhn, A., van de Geest, H., Buntjer, J., Doeswijk, T., Guerra, J., Bouwmeester, H., Vreugdenhil, D. & Keurentjes, J. J. B., 2016, In : Plant Physiology. 170, 4, p. 2187-2203

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
29 Citations (Scopus)

Genome-wide BAC-end sequencing of Musa acuminata DH Pahang reveals further insights into the genome organization of banana

Arnago, R. E., Togawa, R. C., Carpentier, S. C., te Lintel Hekkert, B., Kema, G. H. J. & Souza, M. T., 2011, In : Tree Genetics and Genomes. 7, 5, p. 933-940

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

Genome-wide computational function prediction of Arabidopsis thaliana proteins by integration of multiple data sources

Kourmpetis, Y. I. A., van Dijk, A. D. J., van Ham, R. C. H. J. & ter Braak, C. J. F., 2011, In : Plant Physiology. 155, p. 271-281

Research output: Contribution to journalArticleAcademicpeer-review

29 Citations (Scopus)

Genome-wide identification of bahd acyltransferases and in vivo characterization of HQT-like enzymes involved in caffeoylquinic acid synthesis in globe artichoke

Moglia, A., Acquadro, A., Eljounaidi, K., Milani, A. M., Cagliero, C., Rubiolo, P., Genre, A., Cankar, K., Beekwilder, J. & Comino, C., 2016, In : Frontiers in Plant Science. 7, September, 1424.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

Gezond glutenvri j: haver veel belovend ingredënt

Gilissen, L. J. W. J., 2012, In : Ingrediënt & Product. 23, 23, p. 10-12

Research output: Contribution to journalArticleProfessional