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2013

Analysis of genetically modified red-fleshed apples reveals effects on growth and consumer attributes

Espley, R. V., Bovy, A. G., Bava, C., Jaeger, S. R., Tomes, S., Norling, C., Crawford, J., Rowan, D., McGhie, T. K., Brendolise, C., Putterill, J., Schouten, H. J., Hellens, R. P. & Allan, A. C., 2013, In : Plant Biotechnology Journal. 11, 4, p. 408-419

Research output: Contribution to journalArticleAcademicpeer-review

49 Citations (Scopus)

An efficient flat-surface collar-free grafting method for Arabidopsis thaliana seedlings

Marsch-Martinez, N., Franken, J., Gonzalez-Aguilera, K. L., de Folter, S., Angenent, G. C. & Alvarez-Buylla, E. R., 2013, In : Plant Methods. 9, 14.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
27 Citations (Scopus)

A new opportunity for quality analysis

Hall, R. D., 2013, In : New Food. 16, 3, p. 22-25

Research output: Contribution to journalArticleAcademicpeer-review

Antibody orientation on biosensor surfaces: a minireview

Trilling, A. K., Beekwilder, M. J. & Zuilhof, H., 2013, In : The Analyst. 138, 6, p. 1619-1627

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
191 Citations (Scopus)

Aphid resistance in florist's chrysanthemum (Chrysanthemum morifolium Ramat.) induced by sea anemone equistatin overexpression

Valizadeh, M., Deraison, C., Kazemitabar, S. K., Rahbé, Y. & Jongsma, M. A., 2013, In : African journal of biotechnology. 12, 50, p. 6922-6930

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A toolkit for the mzIdentML standard: the ProteoIDViewer, the mzidLibrary and the mzidValidator.

Ghali, F., Krishna, R., Lukasse, P. N. J., Martínez-Bartolomé, S., Reisinger, F., Hermjakob, H., Vizcaíno, J. A. & Jones, A. R., 2013, In : Molecular and Cellular Proteomics. 12, p. 3026-3035

Research output: Contribution to journalArticleAcademicpeer-review

31 Citations (Scopus)

A Trichome-Specific Linoleate Lipoxygenase Expressed During Pyrethrin Biosynthesis in Pyrethrum

Ramirez, A. M., Yang, T., Bouwmeester, H. J. & Jongsma, M. A., 2013, In : Lipids. 48, 10, p. 1005-1015

Research output: Contribution to journalArticleAcademicpeer-review

9 Citations (Scopus)

Automatic Chemical Structure Annotation of an LC-MSn Based Metabolic Profile from Green Tea

Ridder, L. O., van der Hooft, J. J. J., Verhoeven, S., de Vos, C. H., Bino, R. J. & Vervoort, J., 2013, In : Analytical Chemistry. 85, 12, p. 6033-6040

Research output: Contribution to journalArticleAcademicpeer-review

68 Citations (Scopus)
31 Citations (Scopus)

Balancing of Histone H3K4 Methylation States by the Kdm5c/SMCX Histone Demethylase Modulates Promoter and Enhancer Function

Outchkourov, N. S., Muino Acuna, J. M., Kaufmann, K., IJken, W. F. J., Groot Koerkamp, M. J., van Leenen, D., de Graaf, P., Holstege, F. C. P., Grosveld, F. & Timmers, H. T. M., 2013, In : Cell Reports. 3, 4, p. 1071-1079

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
61 Citations (Scopus)

Biosynthesis of Antinutritional Alkaloids in Solanaceous Crops Is Mediated by Clustered Genes

Itkin, M., Heinig, U., Tzfadia, O., Bhide, A. J., Shinde, B., Cardenas, P. D., Bocobza, S. E., Unger, T., Malitsky, S., Finkers, H. J., Tikunov, Y. M., Bovy, A. G., Chikate, Y., Singh, P., Rogachev, I., Beekwilder, J., Giri, A. P. & Aharoni, A., 2013, In : Science. 341, 6142, p. 175-179

Research output: Contribution to journalArticleAcademicpeer-review

207 Citations (Scopus)

Biosynthesis of Sesquiterpene Lactones in Pyrethrum (Tanacetum cinerariifolium)

Ramirez, A. M., Saillard, N., Yang, T., Franssen, M. C. R., Bouwmeester, H. J. & Jongsma, M. A., 2013, In : PLoS ONE. 8, 5, e65030.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
32 Citations (Scopus)

Caffeoylquinic Acids Biosynthesis and Accumulation in Cynara cardunculus: State of the Art

Moglia, A., Comino, C., Menin, B., Portis, E., Aquadro, A., Beekwilder, M. J., Hehn, A., Bourgaud, F. & Lanteri, S., 2013, In : Acta Horticulturae. 983, p. 401-406

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

CAROTENOID CLEAVAGE DIOXYGENASE 7 modulates plant growth, reproduction, senescence, and determinate nodulation in the model legume Lotus japonicas

Liu, J., Novero, M., Charnikhova, T., Ferrandino, A., Schubert, A., Ruyter-Spira, C. P., Biofante, P., Lovisolo, C. & Bouwmeester, H. J., 2013, In : Journal of Experimental Botany. 64, 7, p. 1967-1981

Research output: Contribution to journalArticleAcademicpeer-review

56 Citations (Scopus)

Changes in polyphenol content during production of grape juice concentrate

Capanoglu, E., de Vos, R. C. H., Hall, R. D., Boyacioglu, D. & Beekwilder, M. J., 2013, In : Food Chemistry. 139, 1-4, p. 521-526

Research output: Contribution to journalArticleAcademicpeer-review

32 Citations (Scopus)

Changes in sour cherry (Prunus cerasus L.) antioxidants during nectar processing and in vitro gastrointestinal digestion.

Toydemir, G., Capanoglu, E., Kamiloglu, S., Boyacioglu, D., de Vos, C. H., Hall, R. D. & Beekwilder, M. J., 2013, In : Journal of Functional Foods. 5, 3, p. 1402-1413

Research output: Contribution to journalArticleAcademicpeer-review

41 Citations (Scopus)

Characterisation and quantification of liposome-type nanoparticles in a beverage matrix using hydrodynamic chromatography and MALDI–TOF mass spectrometry

Helsper, J. P. F. G., Peters, R. J. B., Brouwer, L. & Weigel, S., 2013, In : Analytical and Bioanalytical Chemistry. 405, 4, p. 1181-1189

Research output: Contribution to journalArticleAcademicpeer-review

20 Citations (Scopus)

Characterization of two geraniol synthases from Valeriana officinalis and Lippia dulcis: similar activity but difference in subcellular localization

Dong, L., Miettinen, K., Verstappen, F. W. A., Voster, A., Jongsma, M. A., Memelink, J., van der Krol, S. & Bouwmeester, H. J., 2013, In : Metabolic Engineering. 20, p. 198-211

Research output: Contribution to journalArticleAcademicpeer-review

42 Citations (Scopus)

Chrysanthemum expressing a linalool synthase gene ‘smells good’, but ‘tastes bad’to western flower thrips

Ting Yang, T., Stoopen, G. M., Thoen, H. P. M., Wiegers, G. L. & Jongsma, M. A., 2013, In : Plant Biotechnology Journal. 11, 7, p. 875-882

Research output: Contribution to journalArticleAcademicpeer-review

17 Citations (Scopus)

Citrus phenylpropanoids and defence against pathogens. Part I: Metabolic profiling in elicited fruits

Ballester, A. R., Lafuente, M. T., de Vos, R. C. H., Bovy, A. G. & González-Candelas, L., 2013, In : Food Chemistry. 136, 1, p. 178-185

Research output: Contribution to journalArticleAcademicpeer-review

43 Citations (Scopus)

Construction of a Multifunctional Enzyme Complex via the Strain-Promoted Azide-Alkyne Cycloaddition

Schoffelen, S., Beekwilder, M. J., Debets, M. F., Bosch, H. J. & van Hest, J. C. M., 2013, In : Bioconjugate Chemistry. 24, 6, p. 987-996

Research output: Contribution to journalArticleAcademicpeer-review

25 Citations (Scopus)

Detoxification of a-tomatine by Cladosporium fulvum is required for full virulence on tomato

Ökmen, B., Etalo, D. W., Joosten, M. H. A. J., Bouwmeester, H. J., de Vos, R. C. H., Collemare, J. A. R. & de Wit, P. J. G. M., 2013, In : New Phytologist. 198, 4, p. 1203-1214

Research output: Contribution to journalArticleAcademicpeer-review

48 Citations (Scopus)

Development and growth of fruit bodies and crops of the button mushroom, Agaricus bisporus

Straatsma, G., Sonnenberg, A. S. M. & van Griensven, L. J. L. D., 2013, In : Fungal Biology. 117, 10, p. 697-707

Research output: Contribution to journalArticleAcademicpeer-review

13 Citations (Scopus)

Differences in acidity of apples are probably mainly caused by a malic acid transporter gene on LG16

Khan, S. A., Beekwilder, J., Schaart, J. G., Mumm, R., Soriano, J. M., Jacobsen, E. & Schouten, H. J., 2013, In : Tree Genetics and Genomes. 9, 2, p. 475-487

Research output: Contribution to journalArticleAcademicpeer-review

30 Citations (Scopus)

Differences in insect resistance between tomato species endemic to the Galapagos Islands

Lucatti, A. F., van Heusden, A. W., de Vos, R. C. H., Visser, R. G. F. & Vosman, B., 2013, In : BMC Evolutionary Biology. 13, 12 p., 175.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
28 Citations (Scopus)

Evaluation of Glucosinolate Variation in a Collection of Turnip (Brassica rapa) Germplasm by the Analysis of Intact and Desulfo Glucosinolates

Lee, G. J., Bonnema, G., Zhang, N., Kwak, J. H., de Vos, R. C. H. & Beekwilder, M. J., 2013, In : Journal of Agricultural and Food Chemistry. 61, 16, p. 3984-3993

Research output: Contribution to journalArticleAcademicpeer-review

32 Citations (Scopus)

FLOWERING LOCUS C in monocots and the tandem origin of angiosperm specific MADS-box genes

Ruelens, P., de Maagd, R. A., Proost, S., Theissen, G., Geuten, K. & Kaufmann, K., 2013, In : Nature Communications. 4, 2280.

Research output: Contribution to journalArticleAcademicpeer-review

66 Citations (Scopus)

Gene Ontology consistent protein function prediction: the FALCON algorithm applied to six eukaryotic genomes

Kourmpetis, Y. A. I., van Dijk, A. D. J. & ter Braak, C. J. F., 2013, In : Algorithms for Molecular Biology. 8, 1, 10.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

Identification and characterization of MYB-bHLH-WD40 regulatory complexes controlling proanthocyanidin biosynthesis in strawberry (Fragaria 9 ananassa) fruits

Schaart, J. G., Dubois, C., Romero de la Fuente, I., van Houwelingen, A. M. M. L., de Vos, R. C. H., Jonker, H. H., Xu, W., Routaboul, J. M., Lepinice, L. & Bovy, A. G., 2013, In : New Phytologist. 197, 2, p. 454-467

Research output: Contribution to journalArticleAcademicpeer-review

185 Citations (Scopus)

Identification and QTL mapping of whitefly resistance components in Solanum galapagense

Firdaus, S., van Heusden, A. W., Hidayati, N., Supena, E. D. J., Mumm, R., de Vos, R. C. H., Visser, R. G. F. & Vosman, B., 2013, In : Theoretical and Applied Genetics. 126, 6, p. 1487-1501

Research output: Contribution to journalArticleAcademicpeer-review

32 Citations (Scopus)

Identification of alg3 in the mushroom-forming fungus Schizophyllum commune and analysis of the ¿alg3 knockout mutant

Berends, E., Lehle, L., Henquet, M., Hesselink, T., Wösten, H. A. B., Lugones, L. G. & Bosch, H. J., 2013, In : Glycobiology. 23, 2, p. 147-154 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)
127 Citations (Scopus)
19 Citations (Scopus)

Industrial processing effects on phenolic compounds in sour cherry (Prunus cerasus L.) fruit

Toydemir, G., Capanoglu, E., Gomez-Roldan, M. V., de Vos, R. C. H., Boyacioglu, D., Hall, R. D. & Beekwilder, M. J., 2013, In : Food Research International. 53, 1, p. 218-225

Research output: Contribution to journalArticleAcademicpeer-review

38 Citations (Scopus)

Interactions of blacktea polyphenols with human gut microbiota: implications for gut and cardiovascular health

van Duynhoven, J. P. M., Vaughan, E. E., van Dorsten, F., Gomez-Roldan, V., de Vos, R., Vervoort, J. J. M., van der Hooft, J. J. J., Roger, L., Draijer, R. & Jacobs, D. M., 2013, In : American Journal of Clinical Nutrition. 98, 6, p. 1631S-1641S

Research output: Contribution to journalArticleAcademicpeer-review

52 Citations (Scopus)
17 Citations (Scopus)

In vitro callus-induction in globe artichoke (Cynara cardunculus L. var. scolymus) as a system for the production of caffeoylquinic acids

Menin, B., Moglia, A., Comino, C., Hakkert, J. C., Lanteri, S. & Beekwilder, M. J., 2013, In : Journal of Horticultural Science and Biotechnology. 88, 5, p. 537-542

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Isolation and chemical characterization of a glucogalactomannan of the medicinal mushroom Cordyceps militaris

Smiderle, F. R., Sassaki, G. L., van Griensven, L. J. L. D. & Iacomini, M., 2013, In : Carbohydrate Polymers. 97, 1, p. 74-80

Research output: Contribution to journalArticleAcademicpeer-review

33 Citations (Scopus)

Local auxin biosynthesis regulation by PLETHORA transcription factors controls phyllotaxis in Arabidopsis.

Pinon, V., Prasad, K., Grigg, S. P., Sanchez Perez, G. F. & Scheres, B., 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 3, p. 1107-1112

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
88 Citations (Scopus)

Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment

Bernillon, S., Biais, B., Deborde, C., Maucort, M., Cabasson, C., Gibon, Y., Hansen, T., Husted, S., de Vos, R. C. H., Mumm, R., Jonker, H., Ward, J. L., Miller, S. J., Baker, J. M., Burger, J., Tadmor, Y., Beale, M. H., Schjoerring, J. K., Schaffer, A., Rolin, D. & 2 others, Hall, R. D. & Moing, A., 2013, In : Metabolomics. 9, 1, p. 57-77

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
36 Citations (Scopus)

Metabolomics and molecular marker analysis to explore pepper (Capsicum sp.) biodiversity

Wahyuni, Y., Ballester, A. R., Tikunov, Y. M., de Vos, C. H. R., Pelgrom, K. T. B., Maharijaya, A., Sudarmonowati, E., Bino, R. J. & Bovy, A. G., 2013, In : Metabolomics. 9, 1, p. 130-144

Research output: Contribution to journalArticleAcademicpeer-review

61 Citations (Scopus)

META-PHOR project coördinator, (interview met Robert Hall)

Hall, R. D., 2013, In : LECO Talk!. 3, p. 7-7

Research output: Contribution to journalArticleProfessional

Methane reduction by plant pigments and antioxidants in rumen fluid involves modifications, e.g. hydrogenatioor degradation of the active compoundsn,

Becker, P. M., van Wikselaar, P. G., Ilgenfritz, J., Beekwilder, M. J., de Vos, R. C. H., Franz, C. H. & Zitterl-Eglseer, K., 2013, In : Wiener Tierarztliche Monatsschrift. 100, p. 295-305

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Microspore embryogenesis: establishment of embryo identity and pattern in culture

Soriano, M., Li, H. & Boutilier, K. A., 2013, In : Plant Reproduction. 26, 3, p. 181-196

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
51 Citations (Scopus)

Mining minimal motif pair sets maximally covering interactions in a protein-protein interaction network

Boyen, P., Neven, F., Valentim, F. L. & van Dijk, A. D. J., 2013, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 10, 1, p. 73-86

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Modeling microalgal flocculation and sedimentation

Salim, S., Gilissen, L. J. W. J., Rinzema, A., Vermuë, M. H. & Wijffels, R. H., 2013, In : Bioresource Technology. 144, p. 602-607

Research output: Contribution to journalArticleAcademicpeer-review

11 Citations (Scopus)

N-glycan occupancy of Arabidopsis N-glycoproteins

Song, W., Mentink, R., Henquet, M. G. L., Cordewener, J. H. G., van Dijk, A. D. J., Bosch, H. J., America, A. H. P. & van der Krol, A. R., 2013, In : Journal of Proteomics. 93, p. 343-355

Research output: Contribution to journalArticleAcademicpeer-review

41 Citations (Scopus)

N-Glycosylation of Plant-produced Recombinant Proteins

Bosch, H. J., Castilho, A., Loos, A., Schots, A. & Steinkeller, H., 2013, In : Current Pharmaceutical Design. 19, 31, p. 5503-5512

Research output: Contribution to journalArticleAcademicpeer-review

71 Citations (Scopus)

NON-SMOKY GLYCOSYLTRANSFERASE1 Prevents the Release of Smoky Aroma from Tomato Fruit

Tikunov, Y. M., Molthoff, J. W., de Vos, R. C. H., Beekwilder, M. J., van Houwelingen, A. M. M. L., van der Hooft, J. J. J., Nijenhuis-de Vries, M. A., Labrie, C. W., Verkerke, W., van de Geest, H. C., Víquez Zamora, A. M., Presa, S., Rambla Nebot, J. L., Granell, A., Hall, R. D. & Bovy, A. G., 2013, In : The Plant Cell. 25, 8, p. 3067-3078

Research output: Contribution to journalArticleAcademicpeer-review

46 Citations (Scopus)