Research Output 1989 2020

Filter
Article
2015
21 Citations (Scopus)

Making the difference: integrating structural variation detection tools

Lin, K., Smit, S., Bonnema, A. B., Sanchez Perez, G. F. & de Ridder, D., 2015, In : Briefings in Bioinformatics. 16, 5, p. 852-864

Research output: Contribution to journalArticleAcademicpeer-review

Genomic Structural Variation
Metagenomics
Eukaryota
Pipelines
Technology

Metabolomics Society’s International Affiliations

Roessner, U., Rolin, D., van Rijswijk, M. E. C., Hall, R. D. & Hankemeier, T., 2015, In : Metabolomics. 11, 3, p. 501-502

Research output: Contribution to journalArticleAcademic

5 Citations (Scopus)

Molecular cloning and characterization of the trichome specificchrysanthemyl diphosphate/chrysanthemol synthase promoter fromTanacetum cinerariifolium

Sultana, S., Hu, H., Gao, L., Mao, J., Luo, J., Jongsma, M. A. & Wang, C., 2015, In : Scientia Horticulturae. 185, p. 193-199

Research output: Contribution to journalArticleAcademicpeer-review

Chrysanthemum morifolium
pyrethrins
trichomes
Tanacetum
molecular cloning
23 Citations (Scopus)

Nutraceutical properties of the methanolic extract of edible mushroom Cantharellus cibarius (Fries): Primary mechanisms

Kozarski, M., Klaus, A., Vunduk, J., Zizak, Z., Niksic, M., Jakovljevic, D., Vrvic, M. M. & Van Griensven, L. J. L. D., 2015, In : Food & Function. 6, 6, p. 1875-1886

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cantharellus cibarius
Agaricales
Dietary Supplements
mushrooms
functional foods

Onkruidrobot op proef

Schipper, A. & van Dalfsen, P., 2015, In : De Boomkwekerij. 28, 12, p. 33-33

Research output: Contribution to journalArticleProfessional

Onkruidrobot op proef

Schipper, A. & van Dalfsen, P., 2015, In : Vakblad voor de Bloemisterij. 70, p. 28-28 28.

Research output: Contribution to journalArticleProfessional

61 Citations (Scopus)

Osmotic stress represses strigolactone biosynthesis in Lotus japonicus roots: exploring the interaction between strigolactones and ABA under abiotic stress

Liu, J., He, H., Vitali, M., Visentin, I., Charnikhova, T., Haider, I., Schubert, A. & Ruyter-Spira, C. P., 2015, In : Planta. 241, 6, p. 1435-1451

Research output: Contribution to journalArticleAcademicpeer-review

Lotus corniculatus var. japonicus
Abscisic Acid
Osmotic Pressure
osmotic stress
abiotic stress
47 Citations (Scopus)

Plant embryogenesis requires AUX/LAX-mediated auxin influx

Robert, H. S., Grunewald, W., Cannoot, B., Soriano, M., Swarup, R., Weijers, D., Bennett, M., Boutilier, K. A. & Friml, J., 2015, In : Development. 142, p. 702-711

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Indoleacetic Acids
Embryonic Development
Embryonic Structures
Brassica napus
Plant Growth Regulators
15 Citations (Scopus)

Polyphenol extract from Phellinus igniarius protects against acrolein toxicity in vitro and provides protection in a mouse stroke model

Suabjakyong, P., Saiki, R., Van Griensven, L. J. L. D., Higashi, K., Nishimura, K., Igarashi, K. & Toida, T., 2015, In : PLoS ONE. 10, 3, e0122733.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Phellinus igniarius
acrolein
Acrolein
Polyphenols
stroke
5 Citations (Scopus)

Production of interspecific Campanula hybrids by ovule culture: exploring the effecto of ovule isolation time

Röper, A. C., Lütken, H., Christensen, B., Boutilier, K. A., Petersen, K. K. & Müller, R., 2015, In : Euphytica. 203, p. 643-657

Research output: Contribution to journalArticleAcademicpeer-review

Campanulaceae
ovule culture
Campanula
Ovule
ovules

Profiling of Nutritional and Health-Related Compounds in Oat Varieties

van den Broeck, H. C., Londono Cardona, D. M., Timmer, R. D., Smulders, M. J. M., Gilissen, L. J. W. J. & van der Meer, I. M., 2015, In : Foods. 5, 2, 11 p., nr 2 Communication.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
oats
Glucans
Health
glucans
health
23 Citations (Scopus)

Prolonging the longevity of ex situ conserved seeds by storage under anoxia

Groot, S. P. C., de Groot, L., Kodde, J. & van Treuren, R., 2015, In : Plant genetic resources: characterization and utilization. 13, 1, p. 18-26

Research output: Contribution to journalArticleAcademicpeer-review

hypoxia
Seeds
seeds
seed storage
deterioration
7 Citations (Scopus)

Proteome catalog of Zymoseptoria tritici captured during pathogenesis in wheat

Ben M'Barek, S., Cordewener, J. H. G., van der Lee, T. A. J., America, A. H. P., Mirzadi Gohari, A., Mehrabi, R., Hamza, S., de Wit, P. J. G. M. & Kema, G. H. J., 2015, In : Fungal Genetics and Biology. 79, June, p. 42-53

Research output: Contribution to journalArticleAcademicpeer-review

Proteome
Triticum
Fungal Proteins
Virulence
Mass Spectrometry
13 Citations (Scopus)

Proteomic LC-MS analysis of Arabidopsis cytosolic ribosomes: Identification of ribosomal protein paralogs and re-annotation of the ribosomal protein genes

Hummel, M., Dobrenel, T., Cordewener, J. H. G., Davanture, M., Meyer, C., Smeekens, J. C. M., Bailey-Serres, J., America, A. H. P. & Hanson, J., 2015, In : Journal of Proteomics. 128, p. 436-449 37 p.

Research output: Contribution to journalArticleAcademicpeer-review

Ribosomal Proteins
Ribosomes
Arabidopsis
Proteomics
Genes
1 Citation (Scopus)

Quality improvement of aged cabbage (Brassica oleracea var. capitata) seeds using chlorophyll fluorescence sensor

Yadav, S. K., Jalink, H., Groot, S. P. C., Van Der Schoor, R., Dadlani, M. & Kodde, J., 25 Jun 2015, In : Scientia Horticulturae. 189, p. 81-85 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

Brassica oleracea var. capitata
cabbage
fluorescence
chlorophyll
seeds
11 Citations (Scopus)

Quantitative Trait Locus Analysis of seed germination and seedling vigour in Brassica rapa reveals QTL hotspots and epistatic interactions

Basnet, R. K., Duwal, A., Tiwari, D. N., Xiao, D., Monakhos, S., Bucher, J., Visser, R. G. F., Groot, S. P. C., Bonnema, A. B. & Maliepaard, C. A., 2015, In : Frontiers in Plant Science. 6, 32 p., 1032.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Brassica rapa
vigor
quantitative trait loci
seed germination
seedlings
50 Citations (Scopus)

Real-time imaging of microparticles and living cells with CMOS nanocapacitor arrays

Laborde, C., Pittino, F., Verhoeven, H. A., Lemay, S. G., Selmi, L., Jongsma, M. A. & Widdershoven, F. P., 2015, In : Nature Nanotechnology. 10, p. 791-795

Research output: Contribution to journalArticleAcademicpeer-review

microparticles
Labels
CMOS
Screening
platforms
5 Citations (Scopus)

Reduced seed germination in Arabidopsis over-expressing SWI/SNF2 ATPase genes

Leeggangers, H. A. C. F., Folta, A., Muras, A., Nap, J. P. H. & Mlynarova, L., 2015, In : Physiologia Plantarum. 153, 2, p. 318-326

Research output: Contribution to journalArticleAcademicpeer-review

Germination
Arabidopsis
adenosinetriphosphatase
Adenosine Triphosphatases
Seeds
6 Citations (Scopus)

Relevance of Bt toxin interaction studies for environmental risk assessment of genetically modified crops

De Schrijver, A., De Clercq, P., de Maagd, R. A. & van Frankenhuyzen, K., 2015, In : Plant Biotechnology Journal. 13, 9, p. 1221-1223

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Bacillus thuringiensis
environmental assessment
toxins
crops
synergism
34 Citations (Scopus)

Role of alternative pre-mRNA splicing in temperature signaling

Capovilla, G., Pajoro, A., Immink, R. G. H. & Schmidt, M., 2015, In : Current Opinion in Plant Biology. 27, p. 97-103

Research output: Contribution to journalArticleAcademicpeer-review

alternative splicing
temperature
thermometers
circadian rhythm
plant development
35 Citations (Scopus)

Scaled-up manufacturing of recombinant antibodies produced by plant cells in a 200-L orbitally-shaken disposable bioreactor

Raven, N., Rasche, F., Kuehn, C., Anderlei, T., Klöckner, W., Schuster, F., Henquet, M. G. L., Bosch, H. J., Büchs, J., Fischer, R. & Schillberg, S., 2015, In : Biotechnology and Bioengineering. 112, 2, p. 308-321

Research output: Contribution to journalArticleAcademicpeer-review

Plant Cells
Bioreactors
Antibodies
Adsorption
Proteins
25 Citations (Scopus)
Open Access
Metabolomics
Electrospray Ionization Mass Spectrometry
metabolomics
Laser Therapy
ionization
33 Citations (Scopus)

Structural characterization and immunomodulatory effects of polysaccharides from Phellinus linteus and Phellinus igniarius on the IL-6/IL-10 cytokine balance of the mouse macrophage cell lines (RAW 264.7)

Suabjakyong, P., Nishimura, K., Toida, T. & Van Griensven, L. J. L. D., 2015, In : Food & Function. 6, 8, p. 2834-2844

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Phellinus igniarius
Phellinus linteus
interleukin-10
interleukin-6
Interleukin-10
14 Citations (Scopus)

The cell size distribution of tomato fruit can be changed by overexpression of CDKA1

Czerednik, A., Busscher, M., Angenent, G. C. & de Maagd, R. A., 2015, In : Plant Biotechnology Journal. 13, 2, p. 259-268

Research output: Contribution to journalArticleAcademicpeer-review

Lycopersicon esculentum
Cell Size
Fruit
tomatoes
fruits
29 Citations (Scopus)

The effects of juice processing on black mulberry antioxidants

Tomas, M., Toydemir, G., Boyacioglu, D., Hall, R. D., Beekwilder, M. J. & Capanoglu, E., 2015, In : Food Chemistry. 186, p. 277-284

Research output: Contribution to journalArticleAcademicpeer-review

Morus nigra
Morus
Fruits
juices
Fruit

The Key to Sufficient Food Production; Big data analysis solves complicated puzzle

Hall, R. D., Finkers, H. J. & Wehrens, H. R. M. J., 2015, In : Prophyta Annual. 2015, p. 28-29 52 p.

Research output: Contribution to journalArticleProfessional

Open Access
food production
biologists
data analysis
crops
4 Citations (Scopus)

The KnownLeaf literature curation system captures knowledge about Arabidopsis leaf growth and development and facilitates integrated data mining

Szakonyi, D., van Landeghem, S., Baerenfaller, K., Baeyens, L., Blomme, J., Casanova-Saéz, R., De Bodt, S., Esteve-Bruna, D., Fiorani, F., Gonzalez, N., Grønlund, J., Immink, R. G. H., Jover-Gil, S., Kuwabara, A., Muñoz-Nortes, T., van Dijk, A. D. J., Wilson-Sánchez, D., Buchanan-Wollaston, V., Angenent, G. C., Van de Peer, Y. & 5 others, Inzé, D., Micol, J. L., Gruissem, W., Walsh, S. & Hilson, P., 2015, In : Current Plant Biology. 2, p. 1-11

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Data Mining
Growth and Development
Arabidopsis
Data mining
growth and development
3 Citations (Scopus)

The Sectoral Innovation System of the Dutch Vegetable Breeding Industry

Liu, Z., Jongsma, M. A., Huang, C., Dons, J. J. M. & Omta, S. W. F., 2015, In : NJAS Wageningen Journal of Life Sciences. 74-75, p. 27-39

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
vegetables
Vegetables
vegetable
Breeding
Industry
34 Citations (Scopus)

Towards Elucidating Carnosic Acid Biosynthesis in Lamiaceae: Funtional Characterization of the Three First Steps of the Pathway in Slavia Fruicosa and Rosmarinus officinalis

Bozic, D., Papaefthimiou, D., Brückner, K., de Vos, C. H. R., Tsoleridis, C. A., Katsarou, D., Papanikolaou, A., Pateraki, I., Chatzopoulou, F. M., Dimitriadou, E., Kostas, S., Manzano, D., Scheler, U., Ferrer, A., Tissier, A., Makris, A. M., Kampranis, S. C. & Kanellis, A., 2015, In : PLoS ONE. 10, 5, 28 p., e0124106.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Rosmarinus
Lamiaceae
Rosmarinus officinalis
Biosynthesis
Genes
61 Citations (Scopus)

Towards recommendations for metadata and data handling in plant phenotyping

Krajewski, P., Chen, D., Cwiek, H., van Dijk, A. D. J., Fiorani, F., Kersey, P., Klukas, C., Lange, M., Markiewicz, A., Nap, J. P. H., van Oeveren, J., Pommier, P., Scholz, U., van Schriek, M., Usadel, B. & Weise, S., 2015, In : Journal of Experimental Botany. 66, 18, p. 5417-5427

Research output: Contribution to journalArticleAcademicpeer-review

phenotype
Plant Development
standardization
plant development
Phenotype
34 Citations (Scopus)

Translocation of differently sized and charged polystyrene nanoparticles in in vitro intestinal cell models of increasing complexity

Walczak, A. P., Kramer, E. H. M., Hendriksen, P. J. M., Tromp, P., Helsper, J. P. F. G., van der Zande, M., Rietjens, I. M. C. M. & Bouwmeester, H., 2015, In : Nanotoxicology. 9, 4, p. 453-461

Research output: Contribution to journalArticleAcademicpeer-review

Polystyrenes
Nanoparticles
In Vitro Techniques
Mucus
Surface chemistry
9 Citations (Scopus)

Understanding the role of oat ß-glucan in oat-based dough systems

Londono, D. M., Gilissen, L. J. W. J., Visser, R. G. F., Smulders, M. J. M. & Hamer, R. J., 2015, In : Journal of Cereal Science. 62, p. 1-7

Research output: Contribution to journalArticleAcademicpeer-review

Glucans
glucans
dough
oats
Glutens
2014

Aanwezigheid van een gen is nog lang geen garantie : Moleculaire en genetische kennis maakt sprongen

Angenent, G. C., Kierkels, T. & Heuvelink, E., 2014, In : Onder Glas. 11, 9, p. 18-19

Research output: Contribution to journalArticleProfessional

Open Access
38 Citations (Scopus)

A cautionary note on the use of split-YFP/BiFC in plant protein-protein interaction studies

Horstman, A., Nougalli Tonaco, I. A., Boutilier, K. A. & Immink, R. G. H., 2014, In : International Journal of Molecular Sciences. 15, p. 9628-9643

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Plant Proteins
proteins
Proteins
interactions
Self assembly
19 Citations (Scopus)

A comprehensive set of transcript sequences of the heavy metal hyperaccumulator Noccaea caerulescens

Lin, Y. F., Severing, E. I., te Lintel Hekkert, B., Schijlen, E. G. W. M. & Aarts, M. G. M., 2014, In : Frontiers in Plant Science. 5, 15 p., 261.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
hyperaccumulators
heavy metals
metals
Brassicaceae
unigenes
17 Citations (Scopus)

A detailed comparative study between chemical and bioactive properties of Ganoderma lucidum from different origins

Stojkovic, D. S., Barros, L., Calhelha, R. C., Glamoclija, J., Ciric, A., van Griensven, L. J. L. D., Sokovic, M. & Ferreira, I. C. F. R., 2014, In : International Journal of Food Sciences and Nutrition. 65, 1, p. 42-47

Research output: Contribution to journalArticleAcademicpeer-review

Reishi
Ganoderma lucidum
bioactive properties
China
physicochemical properties
24 Citations (Scopus)

Agaricus Blazei Hot Water Extract Shows Anti Quorum Sensing Activity in the Nosocomial Human PathogenPseudomonas Aeruginosa

Sokovic, M., Ciric, A., Glamoclija, J., Nicolic, M. & van Griensven, L. J. L. D., 2014, In : Molecules. 19, p. 4189-4199

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Agaricus
Quorum Sensing
Biofilms
Pseudomonas aeruginosa
virulence
72 Citations (Scopus)

AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks

Horstman, A., Willemsen, V., Boutilier, K. A. & Heidstra, R., 2014, In : Trends in Plant Science. 19, 3, p. 146-157

Research output: Contribution to journalArticleAcademicpeer-review

transcription factors
somatic embryogenesis
meristems
plant tissues
stem cells
15 Citations (Scopus)
Glucosinolates
thermal degradation
Metabolomics
Brassica
Vegetables
7 Citations (Scopus)

An O-methyltransferase modifies accumulation of methylated anthocyanins in seedlings of tomato

Gomez Roldan, M. V., Outchkourov, N. S., van Houwelingen, A. M. M. L., Lammers, M., Romero Fuente, I., Ziklo, N., Aharoni, A., Hall, R. D. & Beekwilder, M. J., 2014, In : The Plant Journal. 80, 4, p. 695-708

Research output: Contribution to journalArticleAcademicpeer-review

Anthocyanins
methyltransferases
Methyltransferases
Lycopersicon esculentum
Seedlings
8 Citations (Scopus)

A novel Cry9Aa with increased toxicity for Spodoptera exigua (Hübner)

Naimov, S., Nedyalkova, R., Staykov, N., Weemen-Hendriks, M., Minkov, I. & de Maagd, R. A., 2014, In : Journal of Invertebrate Pathology. 115, p. 99-101

Research output: Contribution to journalArticleAcademicpeer-review

Spodoptera exigua
substitution
toxicity
amino acid
amino acid substitution
26 Citations (Scopus)

Anti-inflammatory properties of the medicinal mushroom Cordyceps militaris might be related to its linear (1¿3)-ß-D-glucan.

Smiderle, F. R., Baggio, C. H., Borato, D. G., Santana-Filho, A. P., Sassaki, G. L., Iacomini, M. & van Griensven, L. J. L. D., 2014, In : PLoS ONE. 9, 10, e110266.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cordyceps militaris
Cordyceps
Agaricales
glucans
anti-inflammatory activity
20 Citations (Scopus)

Arabidopsis thaliana receptor-like protein AtRLP23 associates with the receptor-like kinase AtSOBIR1

Bi, G., Liebrand, T. W. H., Cordewener, J. H. G., America, A. H. P., Xu, X. & Joosten, M. H. A. J., 2014, In : Plant Signaling & Behavior. 9, 2, 5 p., e27937.

Research output: Contribution to journalArticleAcademicpeer-review

phosphotransferases (kinases)
Arabidopsis thaliana
receptors
proteins
plant proteins
6 Citations (Scopus)

Biological process annotation of proteins across the plant kingdom

Bargsten, J. W., Severing, E. I., Nap, J. P. H., Sanchez Perez, G. F. & van Dijk, A. D. J., 2014, In : Current Plant Biology. 1, p. 73-82

Research output: Contribution to journalArticleAcademicpeer-review

Molecular Sequence Annotation
Biological Phenomena
Plant Proteins
plant proteins
prediction
7 Citations (Scopus)

Can transcriptomics provide insight into the underlying chemopreventive mechanisms of complex mixtures of phytochemicals in humans?

van Breda, S. G., Wilms, L. C., Gaj, S., Briedé, J. J., Helsper, J. P. F. G., Kleinjans, J. C. & de Kok, T. M., 2014, In : Antioxidants and redox signaling. 20, 14, p. 2107-2113 55 p.

Research output: Contribution to journalArticleAcademicpeer-review

Blueberry Plants
Phytochemicals
Complex Mixtures
Genes
Malus
87 Citations (Scopus)

Central Cell-Derived Peptides Regulate Early Embryo Patterning in Flowering Plants

Costa, L. M., Marshall, E., Tesfaye, M., Silverstein, K. A. T., Mori, M., Umetsu, Y., Otterbach, S. L., Papareddy, R., Dickinson, H. G., Boutilier, K. A., VandenBosch, K. A., Ohki, S. & Gutierrez-Marcos, J. F., 2014, In : Science. 344, 6180, p. 168-172

Research output: Contribution to journalArticleAcademicpeer-review

embryo (plant)
Angiospermae
peptides
endosperm
germ cells
164 Citations (Scopus)

Characterization of Titanium Dioxide Nanoparticles in Food Products: Analytical Methods To Define Nanoparticles

Peters, R. J. B., van Bemmel, M. E. M., Herrera-Rivera, Z., Helsper, J. P. F. G., Marvin, H. J. P., Weigel, S., Tromp, P. C., Oomen, A. G., Rietveld, A. G. & Bouwmeester, H., 2014, In : Journal of Agricultural and Food Chemistry. 62, 27, p. 6285-6293 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

titanium dioxide
personal care products
nanoparticles
particle size distribution
Nanoparticles
47 Citations (Scopus)

Characterization of two genes for the biosynthesis of abietane-type diterpenes in rosemary (Rosmarinus officinalis) glandular trichomes

Brückner, K., Bozic, D., Manzano, D., Papaefthimiou, D., Pateraki, I., Scheler, U., Ferrer, A., de Vos, R. C. H., Kanellis, A. K. & Tissier, A., 2014, In : Phytochemistry. 101, p. 52-64

Research output: Contribution to journalArticleAcademicpeer-review

Abietane Diterpenes
Rosmarinus
Trichomes
Rosmarinus officinalis
Diterpenes
7 Citations (Scopus)

Chemical characterization of the medicinal mushroom Phellinus linteus (Berkeley & Curtis) Teng and contribution of different fractions to its bioactivity

Reis, F. S., Barreira, J. C. M., Calhelha, R. C., van Griensven, L. J. L. D., Ciric, A., Glamoclija, J., Sokovic, M. & Ferreira, I. C. F. R., 2014, In : Food Science and Technology = Lebensmittel-Wissenschaft und Technologie. 58, 2, p. 478-485

Research output: Contribution to journalArticleAcademicpeer-review

Phellinus linteus
Glucans
Agaricales
glucans
Antioxidants

Chlorophyll fluorescence and X-ray analyses to characterise and improve paddy rice seed quality

Costa, D. S., Kodde, J. & Groot, S. P. C., 2014, In : Seed Science and Technology. 42, 3, p. 449-453

Research output: Contribution to journalArticleAcademicpeer-review

seed quality
X-radiation
fluorescence
chlorophyll
rice