Research Output 1989 2020

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2016
39 Citations (Scopus)

The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots

Santuari, L., Sanchez-Perez, G. F., Luijten, M., Rutjens, B., Terpstra, I., Berke, L., Gorte, M., Prasad, K., Bao, D., Timmermans-Hereijgers, J. L. P. M., Maeo, K., Nakamura, K., Shimotohno, A., Pencik, A., Novak, O., Ljung, K., Van Heesch, S., De Bruijn, E., Cuppen, E., Willemsen, V. & 6 others, Mähönen, A. P., Lukowitz, W., Snel, B., De Ridder, D., Scheres, B. & Heidstra, R., 2016, In : The Plant Cell. 28, 12, p. 2937-2951

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gene Regulatory Networks
Arabidopsis
cell differentiation
Cell Differentiation
Growth
21 Citations (Scopus)

The Time Is Right to Focus on Model Organism Metabolomes

Edison, A., Hall, R., Junot, C., Karp, P., Kurland, I., Mistrik, R., Reed, L., Saito, K., Salek, R., Steinbeck, C., Sumner, L. & Viant, M., 2016, In : Metabolites. 6, 1, 8.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Biological Phenomena
Metabolomics
Metabolome
Metabolic Networks and Pathways
Knowledge Bases
24 Citations (Scopus)

The WEIZMASS spectral library for high-confidence metabolite identification

Shahaf, N., Rogachev, I., Heinig, U., Meir, S., Malitsky, S., Battat, M., Wyner, H., Zheng, S., Wehrens, R. & Aharoni, A., 2016, In : Nature Communications. 7, 12423.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
metabolites
Metabolites
Libraries
confidence
Mass Spectrometry
9 Citations (Scopus)

Tracing ancestor rice of Suriname Maroons back to its African origin

Van Andel, T. R., Meyer, R. S., Aflitos, S. A., Carney, J. A., Veltman, M. A., Copetti, D., Flowers, J. M., Havinga, R. M., Maat, H., Purugganan, M. D., Wing, R. A. & Schranz, E., 2016, In : Nature Plants. 2, 16149.

Research output: Contribution to journalArticleAcademicpeer-review

Oryza glaberrima
Suriname
ancestry
rice
landraces

Training and research in seed technology. No quality seeds without skilled staff

Groot, S. P. C. & Hilhorst, H. W. M., 31 May 2016, In : Prophyta Annual. 2016, p. 38-39

Research output: Contribution to journalArticlePopular

Open Access
seed quality
seed industry
seeds
Netherlands
farmers

Why Oats Are Safe and Healthy for Celiac Disease Patients

Gilissen, L. J. W. J., van der Meer, I. M. & Smulders, M. J. M., 26 Nov 2016, In : Medical Sciences. 4, 4, 5 p., 21.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Celiac Disease
Prolamins
Glutens
Gluten-Free Diet
Triticum
2015
20 Citations (Scopus)

(+)-Valencene production in Nicotiana benthamiana is increased by down-regulation of competing pathways

Cankar, K., Jongedijk, E. J., Klompmaker, M., Majdic, T., Mumm, R., Bouwmeester, H. J., Bosch, H. J. & Beekwilder, M. J., 2015, In : Biotechnology Journal. 10, 1, p. 180-189

Research output: Contribution to journalArticleAcademicpeer-review

Farnesyl-Diphosphate Farnesyltransferase
Tobacco
Down-Regulation
Farnesol
Metabolic Engineering
16 Citations (Scopus)

Accumulation of cynaropicrin in globe artichoke and localization ofenzymes involved in its biosynthesis

Eljounaidi, K., Comino, C., Moglia, A., Cankar, K., Genre, A., Hehn, A., Bourgaud, F., Beekwilder, J. & Lanteri, S., 2015, In : Plant Science. 239, p. 128-136

Research output: Contribution to journalArticleAcademicpeer-review

Cynara scolymus
artichokes
sesquiterpenoid lactones
Sesquiterpenes
Lactones
4 Citations (Scopus)

A generic microfluidic biosensor of G protein-coupled receptor activation - impedance measurements of reversible morphological changes of reverse transfected HEK293 cells on microelectrodes

Srivastava, S. K., Ramaneti, R., Roelse, M., Duy Tong, H., Vrouwe, E. X., Brinkman, A. G. M., de Smet, L. C. P. M., van Rijn, C. J. M. & Jongsma, M. A., 2015, In : RSC Advances : An international journal to further the chemical sciences. 5, p. 52563-52570

Research output: Contribution to journalArticleAcademicpeer-review

Microelectrodes
G-Protein-Coupled Receptors
Microfluidics
Biosensors
Chemical activation
13 Citations (Scopus)

AIL and HDG proteins act antagonistically to control cell proliferation

Horstman, A., Fukuoka, H., Muino Acuna, J. M., Nitsch, L. M. C., Guo, C., Passarinho, P. A., Sanchez Perez, G. F., Immink, R. G. H., Angenent, G. C. & Boutilier, K. A., 2015, In : Development. 142, p. 454-464

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cell Proliferation
Meristem
Proteins
Cell Differentiation
Transcription Factors
5 Citations (Scopus)

A multilevel analysis of fruit growth of two tomato cultivars in response to fruit temperature

Okello, R. C., de Visser, P. H. B., Heuvelink, E., Lammers, M., de Maagd, R. A., Struik, P. C. & Marcelis, L. F. M., 2015, In : Physiologia Plantarum. 153, 3, p. 403-418

Research output: Contribution to journalArticleAcademicpeer-review

Multilevel Analysis
Lycopersicon esculentum
Fruit
tomatoes
Temperature
67 Citations (Scopus)

Antioxidants of edible mushrooms

Kozarski, M., Klaus, A., Jakovljevic, D., Todorovic, N., Vunduk, J., Petrović, P., Niksic, M., Vrvic, M. M. & Van Griensven, L., 2015, In : Molecules. 20, 10, p. 19489-19525

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Agaricales
antioxidants
Antioxidants
health
Oxidative stress
20 Citations (Scopus)

A Quantitative and Dynamic Model of the Arabidopsis Flowering Time Gene Regulatory Network

Valentim, F. L., van Mourik, S., Posé, D., Kim, M. C., Schmid, M., van Ham, R. C. H. J., Busscher, M., Sanchez Perez, G. F., Molenaar, J., Angenent, G. C., Immink, R. G. H. & van Dijk, A. D. J., 2015, In : PLoS ONE. 10, 2, e0116973.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gene Regulatory Networks
Arabidopsis
dynamic models
Dynamic models
Genes
51 Citations (Scopus)

Arabidopsis BIRD zinc finger proteins jointly stabilize tissue boundaries by confining the cell fate regulator SHORT-ROOT and contributing to fate specification

Long, Y., Smet, W., Cruz-Ramírez, A., Sanchez Perez, G., Scheres, B. & Blilou, I., 2015, In : The Plant Cell. 27, 4, p. 1185-1199

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
zinc finger motif
Zinc Fingers
Arabidopsis
Proteins
proteins
22 Citations (Scopus)
Mitogen Receptors
Phytophthora
Plant Cells
Arabidopsis
lectins
5 Citations (Scopus)

A spatiotemporal model to assess the introduction risk of African horse sickness by import of animals and vectors in France

Faverjon, C., Leblond, A., Hendrikx, P., Balenghien, T., de Vos, C., Fischer, E. A. J. & de Koeijer, A. A., 4 Jun 2015, In : BMC Veterinary Research. 11, 1, 127.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
African Horse Sickness
African horse sickness
imports
France
Ceratopogonidae
32 Citations (Scopus)

Biological potential of extracts of the wild edible Basidiomycete mushroom Grifola frondosa

Klaus, A., Kozarski, M., Vunduk, N., Todorovic, N., Jakovlejevic, D., Zizak, Z., Pavlovic, V., Levic, S., Niksic, M. & van Griensven, L. J. L. D., 2015, In : Food Research International. 67, p. 272-283

Research output: Contribution to journalArticleAcademicpeer-review

Grifola
Grifola frondosa
Basidiomycota
Agaricales
mushrooms
31 Citations (Scopus)

Capturing of the monoterpene olefin limonene produced in Saccharomyces cerevisiae

Jongedijk, E. J., Cankar, K., Ranzijn, J., van der Krol, A. R., Bouwmeester, H. J. & Beekwilder, M. J., 2015, In : Yeast. 32, 1, p. 159-171

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Monoterpenes
Alkenes
Yeast
Olefins
Saccharomyces cerevisiae
35 Citations (Scopus)

Chemical characterization and biological activity of Chaga (Inonotus obliquus) a medicinal "mushroom"

Glamoclija, J., Ciric, A., Nikolic, M., Fernandes, A., Barros, L., Calhelha, R. C., Ferreira, I. C. F. R., Sokovic, M. & van Griensven, L. J. L. D., 2015, In : Journal of Ethnopharmacology. 162, p. 323-332

Research output: Contribution to journalArticleAcademicpeer-review

Quorum Sensing
Agaricales
Russia
Tumor Cell Line
Pseudomonas aeruginosa
5 Citations (Scopus)

Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS data

Aflitos, S. A., Severing, E. I., Sanchez Perez, G. F., Peters, S. A., de Jong, H. & de Ridder, D., 2015, In : BMC Bioinformatics. 16, 1, 10 p., 352.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cnidaria
Transcriptome
Cluster Analysis
Genome
Genes
1 Citation (Scopus)
Metabolomics
Phytochemicals
Transcription
Lycopersicon esculentum
Fruits
31 Citations (Scopus)

Comprehensive metabolomics to evaluate the impact of industrial processing on the phytochemical composition of vegetable purees

Lopez-Sanchez, P., de Vos, R. C. H., Jonker, H. H., Mumm, R., Hall, R. D., Bialek, L., Leenman, R., Strassburg, K., Vreeken, R., Hankemeier, T., Schumm, S. & van Duynhoven, J. P. M., 2015, In : Food Chemistry. 168, p. 348-355

Research output: Contribution to journalArticleAcademicpeer-review

Metabolomics
Brassica
Vegetables
Phytochemicals
metabolomics
11 Citations (Scopus)

Cordyceps militaris (L.) Link Fruiting Body Reduces the Growth of a Non-Small Cell Lung Cancer Cell Line by Increasing Cellular Levels of p53 and p21

Bizarro, A., Ferreira, I. C. F. R., Soković, M., Van Griensven, L. J. L. D., Sousa, D., Vasconcelos, M. H. & Lima, R. T., 2015, In : Molecules. 20, 8, p. 13927-13940

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cordyceps
cultured cells
Non-Small Cell Lung Carcinoma
lungs
cancer

Corrigendum to "Proteome catalog of Zymoseptoria tritici captured during pathogenesis in wheat". [Fung. Genet. Biol. 79 (2015) 42-53]

Ben Mbarek, S., Cordewener, J. H. G., Van der Lee, T. A. J., America, A. H. P., Gohari, A. M., Mehrabi, R., Hamza, S., de Wit, P. J. G. M. & Kema, G., 2015, In : Fungal Genetics and Biology. 82, p. 291

Research output: Contribution to journalArticleAcademic

De kansen van vergeten granen

Gilissen, L. J. W. J., 2015, In : Bakkers in bedrijf. juli, p. 12-14 3 p.

Research output: Contribution to journalArticleProfessional

15 Citations (Scopus)

Delving deeper into technological innovations to understand differences in rice quality

Calingacion, M. N., Fang, L., Quiatchon-Baeza, L., Mumm, R., Riedel, A., Hall, R. D. & Fitzgerald, M. A., 2015, In : Rice. 8, 10 p., 6.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
rice
innovation
metabolomics
drought
odors
12 Citations (Scopus)

Did the iceman know better? Screening of the medicinal properties of the birch polypore medicinal mushroom, piptoporus betulinus (higher basidiomycetes)

Vunduk, J., Klaus, A., Kozarski, M., Petrović, P., Žižak, Ž., Nikšić, M. & Van Griensven, L. J. L. D., 2015, In : International Journal of Medicinal Mushrooms. 17, 12, p. 1113-1125

Research output: Contribution to journalArticleAcademicpeer-review

Betula
Basidiomycota
Agaricales
Angiotensins
Alkalies
5 Citations (Scopus)

Differentially expressed genes linked to natural variation in long-term memory formation in Cotesia parasitic wasps

van Vugt, J. J. F. A., Hoedjes, K. M., van de Geest, H. C., Schijlen, E. G. W. M., Vet, L. E. M. & Smid, H. M., 2015, In : Frontiers in Behavioral Neuroscience. 9, 17 p., 255.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Wasps
Long-Term Memory
Genes
Anesthesia
Transcriptome
53 Citations (Scopus)

Diversity and functions of volatile organic compounds produced by Streptomyces from a disease-suppressive soil

Cordovez da Cunha, V., Carrion Bravo, V. J., Etalo, D. W., Mumm, R., Zhu, H., van Wezel, G. P. & Raaijmakers, J. M., 2015, In : Frontiers in Microbiology. 6, 1081.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Volatile Organic Compounds
Streptomyces
Soil
Rhizoctonia
Actinobacteria
8 Citations (Scopus)
oat flour
Flour
dough
Bread
bran
30 Citations (Scopus)

Engineering the plant rhizosphere

Zhang, Y., Ruyter-Spira, C. P. & Bouwmeester, H. J., 2015, In : Current Opinion in Biotechnology. 32, p. 136-142

Research output: Contribution to journalArticleAcademicpeer-review

Rhizosphere
Pheromones
Metabolic engineering
Molecules
Biosynthesis
1 Citation (Scopus)

Evaluation of the antigenotoxic effects of the royal sun mushroom, agaricus brasiliensis (Higher basidiomycetes) in human lymphocytes treated with thymol in the comet assay

Radaković, M., Stevanović, J., Soković, M., Radović, D., Van Griensven, L. J. L. D. & Stanimirović, Z., 2015, In : International Journal of Medicinal Mushrooms. 17, 4, p. 321-330

Research output: Contribution to journalArticleAcademicpeer-review

Agaricus
Thymol
Basidiomycota
Comet Assay
Agaricales
17 Citations (Scopus)

Evaluation of the bioactive properties of avenanthramide analogs produced in recombinant yeast

Moglia, A., Goitre, L., Gianoglio, S. & Beekwilder, J., 2015, In : BioFactors. 41, 1, p. 15-27

Research output: Contribution to journalArticleAcademicpeer-review

Yeast
Yeasts
3-Hydroxyanthranilic Acid
Antioxidants
Saccharomyces cerevisiae
23 Citations (Scopus)

Exploring the genomic traits of fungus-feeding bacterial genus Collimonas

Song, C., Schmidt, R., de Jager, V., Krzyzanowska, D., Jongedijk, E., Cankar, K., Beekwilder, J., van Veen, A., de Boer, W., van Veen, J. A. & Garbeva, P., 24 Dec 2015, In : BMC Genomics. 16, 1, 1103.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Fungi
Genome
Peptide Synthases
Genes
Lipopeptides
18 Citations (Scopus)

First successful reduction of clinical allergenicity of food by genetic modification: Mal d 1 silenced apples cause fewer allergy symptoms than the wild-type cultivar

Dubois, A. E. J., Pagliarani, G., Brouwer, R. M., Kollen, B. J., Dragsted, L. O., Eriksen, F. D., Callesen, O., Gilissen, L. J. W. J., Krens, F. A., Visser, R. G. F., Smulders, M. J. M., Vlieg-Boerstra, B. J., Flokstra-de Blok, B. J. & van de Weg, W. E., 2015, In : Allergy. 70, 11, p. 1406-1412

Research output: Contribution to journalArticleAcademicpeer-review

Malus
Hypersensitivity
Food
Down-Regulation
Gene Expression
7 Citations (Scopus)

Flexible, fast and accurate sequence alignment profiling on GPGPU with PaSWAS

Warris, S., Yalcin, F., Jackson, K. J. & Nap, J. P. H., 2015, In : PLoS ONE. 10, 4, 13 p., e0122524.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Sequence Alignment
sequence alignment
Software
value added
immunoglobulins
10 Citations (Scopus)

FPLC and liquid-chromatography mass spectrometry identify candidate necrosis-inducing proteins from culture filtrates of the fungal wheat pathogen Zymoseptoria tritici

Ben M'Barek, S., Cordewener, J. H. G., Tabib Ghaffary, M. S., van der Lee, T. A. J., Liu, Z., Mirzadi Gohari, A., Mehrabi, R., America, A. H. P., Friesen, T. L., Hamza, S., Stergiopoulos, I., de Wit, P. J. G. M. & Kema, G. H. J., 2015, In : Fungal Genetics and Biology. 79, p. 54-62

Research output: Contribution to journalArticleAcademicpeer-review

Liquid Chromatography
Triticum
Mass Spectrometry
Necrosis
Endopeptidase K
6 Citations (Scopus)
Solanum lycopersicum
Lycopersicon esculentum
Lighting
Cell Division
lighting
10 Citations (Scopus)

Gomphrena claussenii, a novel metal-hypertolerant bioindicator species, sequesters cadmium, but not zinc, in vacuolar oxalate crystals

Villafort Carvalho, M. T., Pongrac, P., Mumm, R., van Arkel, J., van Aelst, A., Jeromel, L., Vavpetic, P., Pelicon, P. & Aarts, M. G. M., 2015, In : New Phytologist. 208, 3, p. 763-775

Research output: Contribution to journalArticleAcademicpeer-review

Gomphrena
Oxalates
oxalates
Cadmium
indicator species
1 Citation (Scopus)

Grain legumes and further gluten free legumes-Science, technology and impacts on human health

Rohn, S. & van Griensven, L., 2015, In : Food Research International. 76, P1, p. 1-2

Research output: Contribution to journalArticleAcademic

Groeiend inzicht kan leiden tot versnelling levenscyclus bollen : de bloembol: van black box naar open boek

Immink, G. H., Kierkels, T. & Heuvelink, E., 2015, In : Onder Glas. 12, 2, p. 15-17

Research output: Contribution to journalArticleProfessional

Open Access

High-performance inhoudsstoffen vinden hun weg naar de markt

van der Meer, I. M. & Vollebregt, M., 2015, In : Kennis & Innovatie. 3, p. 2-4

Research output: Contribution to journalArticleProfessional

Open Access
12 Citations (Scopus)

High-throughput phenotyping of plant resistance to aphids by automated video tracking

Kloth, K. J., ten Broeke, C. J. M., Thoen, H. P. M., Hanhart-van den Brink, M., Wiegers, G. L., Krips, O. E., Noldus, L. P. J. J., Dicke, M. & Jongsma, M. A., 2015, In : Plant Methods. 11, 14 p., 4.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Aphids
Aphidoidea
phenotype
insects
Nasonovia ribisnigri

Hoe gevoelig tarwe en gluten liggen

Gilissen, L. J. W. J. (Guest ed.) & van den Broeck, H. C. (Guest ed.), 2015, In : Voeding Nu. 2015, 7/8, p. 12-14

Research output: Contribution to journalArticlePopular

5 Citations (Scopus)

Homologues of potato chromosome 5 show variable collinearity in the euchromatin, but dramatic absence of synteny in the pericentromeric heterochromatin

de Boer, J. M., Datema, E., Tang, X., Borm, T. J. A., Bakker, E. H., van Eck, H. J., van Ham, R. C. H. J., de Jong, J. H. S. G. M., Visser, R. G. F. & Bachem, C. W. B., 2015, In : BMC Genomics. 16, 374.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Euchromatin
Synteny
Chromosomes, Human, Pair 5
Heterochromatin
Solanum tuberosum
14 Citations (Scopus)

Introgression Browser: High throughput whole-genome SNP visualization

Aflitos, S. A., Sanchez Perez, G. F., de Ridder, D., Fransz, P., Schranz, M. E., de Jong, J. H. S. G. M. & Peters, S. A., 2015, In : The Plant Journal. 82, 1, p. 174-182

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
introgression
Single Nucleotide Polymorphism
Genome
genome
Lycopersicon esculentum
24 Citations (Scopus)
Celiac Disease
Triticum
Mass spectrometry
Glutens
Labels
13 Citations (Scopus)

Learning-induced gene expression in the heads of two Nasonia species that differ in long-term memory formation

Hoedjes, K. M., Smid, H. M., Schijlen, E. G. W. M., Vet, L. E. M. & van Vugt, J. J. F. A., 2015, In : BMC Genomics. 16, 162.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Long-Term Memory
Head
Learning
Gene Expression
Genes

Living apart together: crosstalk between the core and supernumerary genomes in Fusarium poae

Vanheule, A., Audenaert, K., Warris, S., van de Geest, H. C., Schijlen, E. G. W. M., Höfte, M., de Saeger, S., Haesaert, G., Waalwijk, C. & van der Lee, T. A. J., 2015, In : Gewasbescherming. 46, 5, p. 154-154

Research output: Contribution to journalArticleProfessional

Open Access