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Improving the identification rate of data independent label-free quantitative proteomics experiments on non-model crops: A case study on apple fruit

Buts, K., Michielssens, S., Hertog, M. L. A. T. M., Hayakawa, E., Cordewener, J., America, A. H. P., Nicolai, B. M. & Carpentier, S. C., 13 Jun 2014, In : Journal of Proteomics. 105, p. 31-45 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

24 Citations (Scopus)

In depth investigation of the metabolism of Nectandra megapotamica chemotypes

de S. Farias, K., Delatte, T., do C. de O. Arruda, R., Alves, F. M., Silva, D. B., Beekwilder, J. & Carollo, C. A., 1 Aug 2018, In : PLoS ONE. 13, 8, e0201996.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Induced point mutations in the phytoene synthase 1 gene cause differences in carotenoid content during tomato fruit ripening

Gady, A. L. F., Vriezen, W., van de Wal, M. H. B. J., Huang, P., Bovy, A. G., Visser, R. G. F. & Bachem, C. W. B., 2012, In : Molecular Breeding. 29, 3, p. 801-812

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Open Access
49 Citations (Scopus)

Induction of electrophile-responsive element (EpRE)-mediated gene expression by tomato extracts in vitro

Gijsbers, L., van Eekelen, H. D. L. M., Nguyen, T. H., de Haan, L. H. J., van der Burg, B., Aarts, J. M. M. J. G., Rietjens, I. M. C. M. & Bovy, A. G., 2012, In : Food Chemistry. 135, 3, p. 1166-1172

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Induction of glucose oxidase, catalase and lactonase in Asperillus niger.

Witteveen, C. F. B., van der Vondervoort, P. J. I., van den Broeck, H. C., van Engelenburg, F. A. C., de Graaff, L. H., Hillebrand, M. H. B. C., Schaap, P. J. & Visser, J., 1993, In : Current Genetics. 24, p. 408-416

Research output: Contribution to journalArticleAcademicpeer-review

20 Citations (Scopus)

Industrial processing effects on phenolic compounds in sour cherry (Prunus cerasus L.) fruit

Toydemir, G., Capanoglu, E., Gomez-Roldan, M. V., de Vos, R. C. H., Boyacioglu, D., Hall, R. D. & Beekwilder, M. J., 2013, In : Food Research International. 53, 1, p. 218-225

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40 Citations (Scopus)

Industrial processing versus home processing of tomato sauce: Effects on phenolics, flavonoids and in vitro bioaccessibility of antioxidants

Tomas, M., Beekwilder, J., Hall, R. D., Sagdic, O., Boyacioglu, D. & Capanoglu, E., 2017, In : Food Chemistry. 220, p. 51-58

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20 Citations (Scopus)

Inferring the Gene Network Underlying the Branching of Tomato Inflorescence

Astola, L., Stigter, J. D., van Dijk, A. D. J., van Daelen, R. & Molenaar, J., 2014, In : PLoS ONE. 9, 4, 7 p., e89689.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Influence of foliar kaolin application and irrigation on photosynthetic activity of grape berries

Garrido, A., Serôdio, J., Vos, R. D., Conde, A. & Cunha, A., 27 Oct 2019, In : Agronomy. 9, 11, 685.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Influence of pre-harvest calcium, potassium and triazole application on the proteome of apple at harvest

Buts, K., Hertog, M. L. A. T. M., Ho, Q. T., America, A. H. P., Cordewener, J. H. G., Vercammen, J., Carpentier, S. C. & Nicolaï, B., 2016, In : Journal of the Science of Food and Agriculture. 96, 15, p. 4984-4993

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

Inhibitory activity of plumbagin produced by Drosera intermedia on food spoilage fungi

Grevenstuk, T., Gonçalves, S., Domingos, T., Quintas, C., van der Hooft, J. J. J., Vervoort, J. J. M. & Romano, A., 2012, In : Journal of the Science of Food and Agriculture. 92, 8, p. 1638-1642

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

In search of tetraploid wheat accessions reduced in celiac disease-related gluten epitopes

van den Broeck, H. C., Hongbing, C., Lacaze, X., Dusautoir, J. C., Gilissen, L. J. W. J., Smulders, J. M. & van der Meer, I. M., 2010, In : Molecular BioSystems. 6, 11, p. 2206-2213

Research output: Contribution to journalArticleAcademicpeer-review

37 Citations (Scopus)

Insect oviposition behavior affects the evolution of adaptation to Bt crops: consequences for refuge policies

Jongsma, M. A., Gould, F., Legros, M., Yang, L., van Loon, J. J. A. & Dicke, M., 2010, In : Evolutionary Ecology. 24, 5, p. 1017-1030

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Open Access
18 Citations (Scopus)

Insights into heterologous biosynthesis of Arteannuin B and artemisinin in physcomitrella patens

Ikram, N. K. K., Kashkooli, A. B., Peramuna, A., Van Der Krol, A. R., Bouwmeester, H. & Simonsen, H. T., 23 Oct 2019, In : Molecules. 24, 21, 3822.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

In Silico Prediction and Automatic LC–MSn Annotation of Green Tea Metabolites in Urine

Ridder, L. O., van der Hooft, J. J. J., Verhoeven, S., de Vos, R. C. H., Vervoort, J. J. M. & Bino, R. J., 2014, In : Analytical Chemistry. 86, 10, p. 4767-4774

Research output: Contribution to journalArticleAcademicpeer-review

26 Citations (Scopus)

Intact DNA purified from flow-sorted nuclei unlocks the potential of next-generation genome mapping and assembly in Solanum species

Gaiero, P., Šimková, H., Vrána, J., Santiñaque, F. F., López-Carro, B., Folle, G. A., van de Belt, J., Peters, S. A., Doležel, J. & de Jong, H., 1 Jan 2018, In : MethodsX. 5, p. 328-336

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Interactions of blacktea polyphenols with human gut microbiota: implications for gut and cardiovascular health

van Duynhoven, J. P. M., Vaughan, E. E., van Dorsten, F., Gomez-Roldan, V., de Vos, R., Vervoort, J. J. M., van der Hooft, J. J. J., Roger, L., Draijer, R. & Jacobs, D. M., 2013, In : American Journal of Clinical Nutrition. 98, 6, p. 1631S-1641S

Research output: Contribution to journalArticleAcademicpeer-review

54 Citations (Scopus)

Interactome-Wide Prediction of Protein-Protein Binding Sites Reveals Effects of Protein Sequence Variation in Arabidopsis thaliana

Valentim, F. L., Neven, F., Boyen, P. & van Dijk, A. D. J., 2012, In : PLoS ONE. 7, 10, e47022.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Intercellular transport of epidermis-expressed MADS domain transcription factors and their effect on plant morphology and floral transition

Urbanus, S. L., Martinelli, A. P., Dinh, Q. D., Aizza, L. C. B., Dornelas, M., Angenent, G. C. & Immink, G. H., 2010, In : The Plant Journal. 63, 3, p. 60-72

Research output: Contribution to journalArticleAcademicpeer-review

36 Citations (Scopus)

Introgression Browser: High throughput whole-genome SNP visualization

Aflitos, S. A., Sanchez Perez, G. F., de Ridder, D., Fransz, P., Schranz, M. E., de Jong, J. H. S. G. M. & Peters, S. A., 2015, In : The Plant Journal. 82, 1, p. 174-182

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
14 Citations (Scopus)
17 Citations (Scopus)

Investigation of MADS domain transcription factor dynamics in the floral meristem

Urbanus, S. L., Dinh, Q. D., Angenent, G. C. & Immink, G. H., 2010, In : Plant Signaling & Behavior. 5, 10, p. 1-3

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)

In vitro callus-induction in globe artichoke (Cynara cardunculus L. var. scolymus) as a system for the production of caffeoylquinic acids

Menin, B., Moglia, A., Comino, C., Hakkert, J. C., Lanteri, S. & Beekwilder, M. J., 2013, In : Journal of Horticultural Science and Biotechnology. 88, 5, p. 537-542

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Isolation and characterization of the Aspergillus niger pyruvate kinase gene.

de Graaff, L. H., van den Broeck, H. C. & Visser, J., 1992, In : Current Genetics. 22, p. 21-27

Research output: Contribution to journalArticleAcademicpeer-review

41 Citations (Scopus)

Isolation and chemical characterization of a glucogalactomannan of the medicinal mushroom Cordyceps militaris

Smiderle, F. R., Sassaki, G. L., van Griensven, L. J. L. D. & Iacomini, M., 2013, In : Carbohydrate Polymers. 97, 1, p. 74-80

Research output: Contribution to journalArticleAcademicpeer-review

34 Citations (Scopus)

Kauniolide synthase is a P450 with unusual hydroxylation and cyclization-elimination activity

Liu, Q., Beyraghdar Kashkooli, A., Manzano, D., Pateraki, I., Richard, L., Kolkman, P., Lucas, M. F., Guallar, V., de Vos, R. C. H., Franssen, M. C. R., van der Krol, A. & Bouwmeester, H., 7 Nov 2018, In : Nature Communications. 9, 1, 4657.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Key Success Factors of Innovation Projects of Vegetable Breeding Companies in China

Liu Zhen, Z., Kemp, R. G. M., Jongsma, M. A., Huang, C., Dons, J. J. M. & Omta, S. W. F., 2014, In : International Food and Agribusiness Management Review. 17, 4, p. 177-204

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Kleine deeltjes, grote kansen: nanotechnologie neemt een grote vlucht (Interview met Maarten Jongsma)

Smit, A. & Jongsma, M. A., 2012, In : WageningenWorld. 4, p. 34-39

Research output: Contribution to journalArticleProfessional

Open Access

Koreaanse aardappel in Wageningen

Jongsma, M. A., 2012, In : De Volkskrant. p. 13 1 p.

Research output: Contribution to journalArticlePopular

28 Citations (Scopus)

Learning-induced gene expression in the heads of two Nasonia species that differ in long-term memory formation

Hoedjes, K. M., Smid, H. M., Schijlen, E. G. W. M., Vet, L. E. M. & van Vugt, J. J. F. A., 2015, In : BMC Genomics. 16, 162.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
13 Citations (Scopus)

LEW3, encoding a putative a-1,2-mannosyltransferase (ALG11) in N-linked glycoprotein, plays vital roles in cell-wall biosynthesis and the abiotic stress response in Arabidopsis thaliana

Zhang, M., Henquet, M. G. L., Chen, Z., Zhang, H., Zhang, Y., Ren, X., van der Krol, A. R., Gonneau, M., Bosch, H. J. & Gong, Z., 2009, In : The Plant Journal. 60, 6, p. 983-999

Research output: Contribution to journalArticleAcademicpeer-review

34 Citations (Scopus)

Light-Induced Vitamin C Accumulation in Tomato Fruits is Independent of Carbohydrate Availability

Ntagkas, N., Woltering, E. J., Bouras, S., de Vos, C. H., Dieleman, J. A., Nicole, C., Labrie, C. W. & Marcelis, L. F. M., 3 Apr 2019, In : Plants. 8, 4, 86.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Living apart together: Crosstalk between the core and supernumerary genomes in a fungal plant pathogen

Vanheule, A., Audenaert, K., Warris, S., van de Geest, H., Schijlen, E., Höfte, M., De Saeger, S., Haesaert, G., Waalwijk, C. & van der Lee, T., 2016, In : BMC Genomics. 17, 18 p., 670.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
21 Citations (Scopus)

Living apart together: crosstalk between the core and supernumerary genomes in Fusarium poae

Vanheule, A., Audenaert, K., Warris, S., van de Geest, H. C., Schijlen, E. G. W. M., Höfte, M., de Saeger, S., Haesaert, G., Waalwijk, C. & van der Lee, T. A. J., 2015, In : Gewasbescherming. 46, 5, p. 154-154

Research output: Contribution to journalArticleProfessional

Open Access

Local auxin biosynthesis regulation by PLETHORA transcription factors controls phyllotaxis in Arabidopsis.

Pinon, V., Prasad, K., Grigg, S. P., Sanchez Perez, G. F. & Scheres, B., 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 3, p. 1107-1112

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
89 Citations (Scopus)

Long-read annotation: Automated eukaryotic genome annotation based on long-read cDNA sequencing

Cook, D. E., Valle-Inclan, J. E., Pajoro, A., Rovenich, H., Thomma, B. P. H. J. & Faino, L., 1 Jan 2019, In : Plant Physiology. 179, 1, p. 38-54 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
11 Citations (Scopus)

Lost in diversity: the interactions between soil-borne fungi, biodiversity and plant productivity

Mommer, L., Cotton, A., Raaijmakers, J. M., Termorshuizen, A. J., van Ruijven, J., Hendriks, M., van Rijssel, S., van de Mortel, J. E., van der Paauw, J. W. M., Schijlen, E. G. W. M., Smit-Tiekstra, A., Berendse, F., de Kroon, H. & Dumbrell, A. J., Apr 2018, In : New Phytologist. 218, 2, p. 542-553

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
36 Citations (Scopus)

Low Temperature Affects Stem Cell Maintenance in Brassica oleracea Seedlings

de Jonge, J., Kodde, J., Severing, E. I., Bonnema, G., Angenent, G. C., Immink, R. G. H. & Groot, S. P. C., 2016, In : Frontiers in Plant Science. 7, 800.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

MADS: the missing link between identity and growth?

Dornelas, M. C., Patreze, C. M., Angenent, G. C. & Immink, R. G. H., 2011, In : Trends in Plant Science. 16, 2, p. 89-97

Research output: Contribution to journalArticleAcademicpeer-review

53 Citations (Scopus)

Making the difference: integrating structural variation detection tools

Lin, K., Smit, S., Bonnema, A. B., Sanchez Perez, G. F. & de Ridder, D., 2015, In : Briefings in Bioinformatics. 16, 5, p. 852-864

Research output: Contribution to journalArticleAcademicpeer-review

22 Citations (Scopus)

Mapping in the era of sequencing: high density genotyping and its application for mapping TYLCV resistance in Solanum pimpinellifolium

Viquez-Zamora, M., Caro Rios, C. M., Finkers, H. J., Tikunov, Y. M., Bovy, A. G., Visser, R. G. F., Bai, Y. & van Heusden, A. W., 2014, In : BMC Genomics. 15, 10 p., 1152.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

Mapping of the S. demissum late blight resistance gene R8 to a new locus on chromosome IX

Jo, K. R., Arens, M. J. B., Kim, T. Y., Jongsma, M. A., Visser, R. G. F., Jacobsen, E. & Vossen, J. H., 2011, In : Theoretical and Applied Genetics. 123, 8, p. 1331-1340

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
39 Citations (Scopus)
Open Access
9 Citations (Scopus)

maTE: discovering expressed interactions between microRNAs and their targets

Yousef, M., Abddallah, L. & Allmer, J., 15 Oct 2019, In : Bioinformatics. 35, 20, p. 4020-2028 btz204.

Research output: Contribution to journalArticleAcademicpeer-review