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Coeliakie, gluten en de ontwikkeling van granen met verlaagde toxiciteit

Gilissen, L. J. W. J., van der Meer, I. M. & Smulders, M. J. M., 2009, In : Patient Care. 12, p. 19-23

Research output: Contribution to journalArticleProfessional

Coeliakie, van haver tot gort

Gilissen, L. J. W. J., 2014, In : Barneveldse Krant.

Research output: Contribution to journalArticlePopular

Co-Evolution of Insect Proteases and Plant Protease Inhibitors.

Jongsma, M. A. & Beekwilder, M. J., 2011, In : Current Protein and Peptide Science. 12, 5, p. 437-447

Research output: Contribution to journalArticleAcademicpeer-review

34 Citations (Scopus)
1 Citation (Scopus)

Compact tomato seedlings and plants upon overexpression of a tomato chromatin remodelling ATPase gene

Folta, A., Bargsten, J. W., Bisseling, T., Nap, J. P. H. & Mlynarova, L., 2016, In : Plant Biotechnology Journal. 14, 2, p. 581-591

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome

Severing, E. I., van Dijk, A. D. J., Stiekema, W. & van Ham, R. C. H. J., 2009, In : BMC Genomics. 10, 13 p., 154.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
39 Citations (Scopus)

Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana

Aerts, N., de Bruijn, S., van Mourik, H., Angenent, G. C. & van Dijk, A. D. J., 25 Jun 2018, In : BMC Plant Biology. 18, 1, 131.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)
8 Citations (Scopus)

Comparative analysis of repetitive sequences among species from the potato and the tomato clades

Gaiero Guadagna, P., Vaio, M., Peters, S. A., Schranz, M. E., de Jong, J. H. S. G. M. & Speranza, P. R., 15 Feb 2019, In : Annals of Botany. 123, 3, p. 521-532

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Comparative antifeedant activities of polygodial and pyrethrins against whiteflies (Bemisia tabaci) and aphids (Myzus persicae)

Prota, N., Bouwmeester, H. J. & Jongsma, M. A., 2014, In : Pest Management Science. 70, 4, p. 682-688 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

12 Citations (Scopus)

Comparative genomics of chytrid fungi reveal insights into the obligate biotrophic and pathogenic lifestyle of Synchytrium endobioticum

van de Vossenberg, B. T. L. H., Warris, S., Nguyen, H. D. T., van Gent-Pelzer, M. P. E., Joly, D. L., van de Geest, H. C., Bonants, P. J. M., Smith, D. S., Lévesque, A. C. & van der Lee, T. A. J., 17 Jun 2019, In : Scientific Reports. 9, 1, 8672.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses

van Velzen, R., Holmer, R., Bu, F., Rutten, L. J. J., van Zeijl, A. L., Liu, W., Santuari, L., Cao, Q., Sharma, T., Shen, D., Purwana Roswanjaya, Y., Wardhani, T., Seifi Kalhor, M., Jansen, J., van den Hoogen, D. J., Güngör, B., Hartog, M. V., Hontelez, J., Verver, J., Yang, W-C. & 11 others, Schijlen, E. G. W. M., Repin, R., Schilthuizen, M., Schranz, M. E., Heidstra, R., Miyata, K., Fedorova, E., Kohlen, W., Bisseling, A. H. J., Smit, S. & Geurts, R., 15 May 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 20, p. E4700-E4709

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
53 Citations (Scopus)

Comparative Metabolomics and Molecular Phylogenetics of Melon (Cucumis melo, Cucurbitaceae) Biodiversity

Moing, A., Allwood, J. W., Aharoni, A., Baker, J., Beale, M. H., Ben-Dor, S., Biais, B., Brigante, F., Burger, Y., Deborde, C., Erban, A., Doron-Faigenboim, A., Gur, A., Goodacre, R., Hansen, T., Jacob, D., Katzir, N., Kopka, J., Lewinsohn, E., Maucourt, M. & 16 others, Meir, S., Miller, S., Mumm, R., Oren, E., Paris, H. S., Rogachev, I., Rollin, D., Saar, U., Schjoerring, J. K., Tadmor, Y., Tzuri, G., de Vos, C. H., Ward, J., Yeselson, E., Hall, R. D. & Schaffer, A., 24 Mar 2020, In : Metabolites. 10, 3, 26 p., 121.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Comparative methods for association studies: a case study on metabolite variation in a Brassica rapa core collection

Pino del Carpio, D., Basnet, R. K., de Vos, C. H., Maliepaard, C. A., Paulo, M. J. & Bonnema, A. B., 2011, In : PLoS ONE. 6, 5, e19624.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
26 Citations (Scopus)

Comparison of the chemical composition of three species of smartweed (genus Persicaria) with a focus on drimane sesquiterpenoids

Prota, N., Mumm, R., Bouwmeester, H. J. & Jongsma, M. A., 2014, In : Phytochemistry. 108, p. 129-136

Research output: Contribution to journalArticleAcademicpeer-review

13 Citations (Scopus)

Complete genome sequence and taxonomic position of anguillid herpesvirus 1

van Beurden, S. J., Bossers, A., Voorbergen-Laarman, H. A., Haenen, O. L. M., Peters, S. A., Abma-Henkens, M. H. C., Peeters, B. P. H., Rottier, P. J. M. & Engelsma, M. Y., 2010, In : Journal of General Virology. 91, 4, p. 880-887

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
52 Citations (Scopus)

Composition of Human Skin Microbiota Affects Attractiveness to Malaria Mosquitoes

Verhulst, N. O., Qiu, Y. T., Beijleveld, H., Maliepaard, C. A., Knights, D., Schulz, S., Berg-Lyons, D., Lauber, C. L., Verduijn, W., Haasnoot, G. W., Mumm, R., Bouwmeester, H. J., Claas, F. H. J., Dicke, M., van Loon, J. J. A., Takken, W., Knight, R. & Smallegange, R. C., 2011, In : PLoS ONE. 6, 12, 7 p., e28991.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
117 Citations (Scopus)

Comprehensive metabolomics to evaluate the impact of industrial processing on the phytochemical composition of vegetable purees

Lopez-Sanchez, P., de Vos, R. C. H., Jonker, H. H., Mumm, R., Hall, R. D., Bialek, L., Leenman, R., Strassburg, K., Vreeken, R., Hankemeier, T., Schumm, S. & van Duynhoven, J. P. M., 2015, In : Food Chemistry. 168, p. 348-355

Research output: Contribution to journalArticleAcademicpeer-review

31 Citations (Scopus)

Comprehensive phenotyping reveals interactions and functions of Arabidopsis thaliana TCP genes in yield determination

van Es, S. W., van der Auweraert, E., Rodrigues da Silveira, S., Angenent, G. C., van Dijk, A. D. J. & Immink, G. H., 22 Mar 2019, In : The Plant Journal.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Conserved and variable correlated mutations in the plant MADS protein network

van Dijk, A. D. J. & van Ham, R. C. H. J., 2010, In : BMC Genomics. 11, 607.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Constitutive Activation of the Midgut Response to Bacillus thuringiensis in Bt-Resistant Spodoptera exigua

Hernandez-Martinez, P., Navarro-Cerrillo, G., Caccia, S., de Maagd, R. A., Moar, W. J., Ferre, J., Escriche, B. & Herrero, S., 2010, In : PLoS ONE. 5, 9, e12795.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
42 Citations (Scopus)

Construction of a Multifunctional Enzyme Complex via the Strain-Promoted Azide-Alkyne Cycloaddition

Schoffelen, S., Beekwilder, M. J., Debets, M. F., Bosch, H. J. & van Hest, J. C. M., 2013, In : Bioconjugate Chemistry. 24, 6, p. 987-996

Research output: Contribution to journalArticleAcademicpeer-review

26 Citations (Scopus)

Consumer attitudes towards hypoallergenic apples that alleviate mild apple allergy

Schenk, M. F., van der Maas, M. P., Smulders, M. J. M., Gilissen, L. J. W. J., Fischer, A. R. H., van der Lans, I. A., Jacobsen, E. & Frewer, L. J., 2011, In : Food Quality and Preference. 22, 1, p. 83-91

Research output: Contribution to journalArticleAcademicpeer-review

25 Citations (Scopus)

Consumption of Coprinus comatus polysaccharide extract causes recovery of alcoholic liver damage in rats

Ozalp, F. O., Canbek, M., Yamac, M., Kanbak, G., van Griensven, L. J. L. D., Uyanoglu, M., Senturk, H., Karlkava, K. & Oglakci, A., 2014, In : Pharmaceutical biology. 52, 8, p. 994-1002

Research output: Contribution to journalArticleAcademicpeer-review

14 Citations (Scopus)

Continuous-time modeling of cell fate determination in Arabidopsis flowers

van Mourik, S., van Dijk, A. D. J., de Gee, M., Immink, R. G. H., Kaufmann, K., Angenent, G. C., van Ham, R. C. H. J. & Molenaar, J., 2010, In : BMC Systems Biology. 4, 13 p., 101.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
15 Citations (Scopus)

Contribution of the epigenetic mark H3K27me3 to functional divergence after whole genome duplication in Arabidopsis

Berke, L., Sanchez Perez, G. F. & Snel, B., 2012, In : Genome Biology. 13, 10, R94.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
14 Citations (Scopus)

Control of anthocyanin and non-flavonoid compounds by anthocyanin-regulating MYB and bHLH transcription factors in Nicotiana benthamiana leaves

Outchkourov, N. S., Carollo, C. A., Gomez Roldan, M. V., de Vos, C. H., Bosch, H. J., Hall, R. D. & Beekwilder, M. J., 2014, In : Frontiers in Plant Science. 5, 9 p., 519.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
20 Citations (Scopus)

Cordyceps militaris (L.) Link Fruiting Body Reduces the Growth of a Non-Small Cell Lung Cancer Cell Line by Increasing Cellular Levels of p53 and p21

Bizarro, A., Ferreira, I. C. F. R., Soković, M., Van Griensven, L. J. L. D., Sousa, D., Vasconcelos, M. H. & Lima, R. T., 2015, In : Molecules. 20, 8, p. 13927-13940

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
11 Citations (Scopus)

Correcting palindromes in long reads after whole-genome amplification

Warris, S., Schijlen, E. G. W. M., van de Geest, H. C., Vegesna, R., Hesselink, T., te Lintel Hekkert, B., Sanchez Perez, G. F., Medvedev, P., Makova, K. D. & de Ridder, D., 6 Nov 2018, In : BMC Genomics. 19, 798.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Correlated mutations via regularized multinomial regression

Sreekumar, J., ter Braak, C. J. F., van Ham, R. C. H. J. & van Dijk, A. D. J., 2011, In : BMC Bioinformatics. 12, 13 p., 444.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)

Correlation of Rutin Accumulation with 3-O-Glucosyl Transferase and Phenylalanine Ammonia-lyase Activities During the Ripening of Tomato Fruit

Capanoglu, E., Beekwilder, J., Matros, A., Boyacioglu, D., Hall, R. D. & Mock, H. P., 2012, In : Plant Foods for Human Nutrition. 67, 4, p. 371-376

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Corrigendum to "Proteome catalog of Zymoseptoria tritici captured during pathogenesis in wheat". [Fung. Genet. Biol. 79 (2015) 42-53]

Ben Mbarek, S., Cordewener, J. H. G., Van der Lee, T. A. J., America, A. H. P., Gohari, A. M., Mehrabi, R., Hamza, S., de Wit, P. J. G. M. & Kema, G., 2015, In : Fungal Genetics and Biology. 82, p. 291

Research output: Contribution to journalArticleAcademic

CRISPR/Cas9 Gene Editing of Gluten in Wheat to Reduce Gluten Content and Exposure—Reviewing Methods to Screen for Coeliac Safety

Jouanin, A. A., Gilissen, L. J. W. J., Schaart, J. G., Leigh, F. J., Cockram, J., Wallington, E. J., Boyd, L. A., van den Broeck, H. C., van der Meer, I. M., America, A. H. P., Visser, R. G. F. & Smulders, M. J. M., 24 Apr 2020, In : Frontiers in Nutrition. 7, 51.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

CRISPR/Cas inactivation of RECQ4 increases homeologous crossovers in an interspecific tomato hybrid

de Maagd, R. A., Loonen, A., Chouaref, J., Pelé, A., Meijer-Dekens, F., Fransz, P. & Bai, Y., Mar 2020, In : Plant Biotechnology Journal. 18, 3, p. 805-813

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Cross-Family Transcription Factor Interactions: An Additional Layer of Gene Regulation

Bemer, M., van Dijk, A-J., Immink, R. G. H. & Angenent, G. C., 2017, In : Trends in Plant Science. 22, 1, p. 66-80

Research output: Contribution to journalArticleAcademicpeer-review

34 Citations (Scopus)

Cross-platform comparative analyses of genetic variation in amino acid content in potato tubers

Carreno-Quintero, N., Undas, A. K., Bachem, C. W. B., Mumm, R., Visser, R. G. F., Bouwmeester, H. J. & Keurentjes, J. J. B., 2014, In : Metabolomics. 10, 6, p. 1239-1257

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Cross-talk between sporophyte and gametophyte generations is promoted by CHD3 chromatin remodelers in Arabidopsis thaliana

Carter, B., Henderson, J. T., Svedin, E., Fiers, M. A., McCarthy, K., Smith, A., Guo, C., Bishop, B., Zhang, H., Riksen-Bruinsma, T., Shockley, A., Dilkes, B. P., Boutilier, K. A. & Ogas, J., 2016, In : Genetics. 203, 2, p. 817-829

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)

Cultivated strains of Agaricus bisporus and A.brasiliensis: chemical characterization and evaluation of antioxidant and antimicrobial properties for the final healthy product – natural preservatives in yoghurt

Stojkovic, D. S., Reis, F. S., Glamoclija, J., Ciric, A., Barros, L., van Griensven, L. J. L. D., Ferreira, I. C. F. R. & Sokovic, M., 2014, In : Food & Function. 5, 7, p. 1602-1612

Research output: Contribution to journalArticleAcademicpeer-review

40 Citations (Scopus)

Cytochrome P450s from Cynara cardunculus L. CYP71AV9 andCYP71BL5, catalyze distinct hydroxylations in the sesquiterpenelactone biosynthetic pathway

Eljounaidi, K., Cankar, K., Comino, C., Moglia, A., Hehn, A., Bourgaud, F., Bouwmeester, H. J., Menin, B., Lanteri, S. & Beekwilder, M. J., 2014, In : Plant Science. 223, p. 59-68

Research output: Contribution to journalArticleAcademicpeer-review

28 Citations (Scopus)

Data integration and network reconstruction with ~omics data using Random Forest regression in potato

Acharjee, A., Kloosterman, B. A., de Vos, R. C. H., Werij, J. S., Bachem, C. W. B., Visser, R. G. F. & Maliepaard, C. A., 2011, In : Analytica Chimica Acta. 705, 1-2, p. 56-63

Research output: Contribution to journalArticleAcademicpeer-review

39 Citations (Scopus)

Defense of pyrethrum flowers: repelling herbivore and recruiting carnivore by producing aphid alarm pheromone

Li, J., Hu, H., Mao, J., Yu, L., Stoopen, G., Wang, M., Mumm, R., de Ruijter, N. C. A., Dicke, M., Jongsma, M. A. & Wang, C., Aug 2019, In : New Phytologist. 223, 3, p. 1607-1620

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

De halm in glutenvrije haverketen

Gilissen, L. J. W. J., 2012, In : De Oogst (Gewas en Glas). p. 31 1 p.

Research output: Contribution to journalArticlePopular

De kansen van vergeten granen

Gilissen, L. J. W. J., 2015, In : Bakkers in bedrijf. juli, p. 12-14 3 p.

Research output: Contribution to journalArticleProfessional

Delving deeper into technological innovations to understand differences in rice quality

Calingacion, M. N., Fang, L., Quiatchon-Baeza, L., Mumm, R., Riedel, A., Hall, R. D. & Fitzgerald, M. A., 2015, In : Rice. 8, 10 p., 6.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
18 Citations (Scopus)

De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing

Schmidt, M. H. W., Vogel, A., Denton, A. K., Istace, B., Wormit, A., van de Geest, H. C., Bolger, M. E., Alseekh, S., Mass, J., Pfaff, C., Schurr, U., Chetelat, R., Maumus, F., Aury, J-M., Koren, S., Fernie, A. R., Zamir, D., Bolger, A. & Usadel, B., Oct 2017, In : The Plant Cell. 29, 10, p. 2336-2348

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
56 Citations (Scopus)

De novo production of the flavonoid naringenin in engineered Saccharomyces erevisiae

Koopman, F., Beekwilder, J., Crimi, B., van Houwelingen, A., Hall, R. D., Bosch, H. J., van Maris, A. J. A., Pronk, J. T. & Daran, J. M., 2012, In : Microbial Cell Factories. 11, 155.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
179 Citations (Scopus)

De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology

Nijkamp, J. F., van den Broek, M., Datema, E., de Kok, S., Bosman, L., Luttik, M. A., Daran-Lapujade, P., Vongsangnak, W., Nielsen, J., Heijne, W. H. M., Klaassen, P., Paddon, C. J., Platt, D., Kotter, P., van Ham, R. C. H. J., Reinders, M. J. T., Pronk, J. T., de Ridder, D. & Daran, J. M., 2012, In : Microbial Cell Factories. 11, 36.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
151 Citations (Scopus)

De ontwikkeling van hypoallergene appelrassen

van der Meer, I. M., van de Weg, W. E., van der Maas, M. P., Schenk, M. F., Smulders, M. J. M. & Gilissen, L. J. W. J., 2012, In : Nederlands Tijdschrift voor Allergie en Astma. 12, 3, p. 106-113

Research output: Contribution to journalArticleProfessional

De opmars van de academische entrepeneur

Leloux, M., Popescu, F. & Koops, A. J., 2014, In : TH&MA : tijdschrift voor hoger onderwijs & management. 2014, 5, p. 76-82

Research output: Contribution to journalArticlePopular

"Design and application of a data-independent precursor and product ion repository."

Thalassinos, K., Vissers, J. P., Tenzer, S., Levin, Y., Thompson, J. W., Daniel, D., Mann, D., Delong, M. R., Moseley, M. A., America, A. H. P., Ottens, A. K., Cavey, G. S., Efstathiou, G., Scrivens, J. H., Langridge, J. I. & Geromanos, S. J., 2012, In : Journal of the American Society for Mass Spectrometry. 23, 10, p. 1808-1820

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)