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2020

Comparative Metabolomics and Molecular Phylogenetics of Melon (Cucumis melo, Cucurbitaceae) Biodiversity

Moing, A., Allwood, J. W., Aharoni, A., Baker, J., Beale, M. H., Ben-Dor, S., Biais, B., Brigante, F., Burger, Y., Deborde, C., Erban, A., Doron-Faigenboim, A., Gur, A., Goodacre, R., Hansen, T., Jacob, D., Katzir, N., Kopka, J., Lewinsohn, E., Maucourt, M. & 16 others, Meir, S., Miller, S., Mumm, R., Oren, E., Paris, H. S., Rogachev, I., Rollin, D., Saar, U., Schjoerring, J. K., Tadmor, Y., Tzuri, G., de Vos, C. H., Ward, J., Yeselson, E., Hall, R. D. & Schaffer, A., 24 Mar 2020, In : Metabolites. 10, 3, 26 p., 121.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

CRISPR/Cas9 Gene Editing of Gluten in Wheat to Reduce Gluten Content and Exposure—Reviewing Methods to Screen for Coeliac Safety

Jouanin, A. A., Gilissen, L. J. W. J., Schaart, J. G., Leigh, F. J., Cockram, J., Wallington, E. J., Boyd, L. A., van den Broeck, H. C., van der Meer, I. M., America, A. H. P., Visser, R. G. F. & Smulders, M. J. M., 24 Apr 2020, In : Frontiers in Nutrition. 7, 51.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

CRISPR/Cas inactivation of RECQ4 increases homeologous crossovers in an interspecific tomato hybrid

de Maagd, R. A., Loonen, A., Chouaref, J., Pelé, A., Meijer-Dekens, F., Fransz, P. & Bai, Y., Mar 2020, In : Plant Biotechnology Journal. 18, 3, p. 805-813

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Development and evaluation of two TaqMan assays for generic detection of Dickeya species

Zijlstra, C., De Haas, L. G., Krijger, M., Verstappen, E., Warris, S., de Haan, E. & van der Wolf, J., Jan 2020, In : European Journal of Plant Pathology. 156, p. 311-316 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Functional replacement of isoprenoid pathways in Rhodobacter sphaeroides

Orsi, E., Beekwilder, J., van Gelder, D., van Houwelingen, A., Eggink, G., Kengen, S. W. M. & Weusthuis, R. A., 24 Mar 2020, In : Microbial Biotechnology.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Green and White Asparagus (Asparagus officinalis): A Source of Developmental, Chemical and Urinary Intrigue

Pegiou, I., Mumm, R., Acharya, P., de Vos, C. H. & Hall, R. D., Jan 2020, In : Metabolites. 10, 1, 17.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Identification of bioactive phytochemicals in mulberries

D’urso, G., Mes, J. J., Montoro, P., Hall, R. D. & de Vos, R. C. H., 1 Jan 2020, In : Metabolites. 10, 1, 7.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing

Fuentes, R., Hesselink, T., Nieuwenhuis, R., Bakker, L. V., Schijlen, E. G. W. M., van Dooijeweert, W., Diaz Trivino, S., de Haan, J. R., Sanchez Perez, G. F., Zhang, X., Fransz, P., de Jong, J. H. S. G. M., van Dijk, A. D. J., de Ridder, D. & Peters, S. A., May 2020, In : The Plant Journal. 102, 3, p. 480-492

Research output: Contribution to journalArticleAcademicpeer-review

Metabolic flux ratio analysis by parallel 13C labeling of isoprenoid biosynthesis in Rhodobacter sphaeroides

Orsi, E., Beekwilder, J., Peek, S., Eggink, G., Kengen, S. W. M. & Weusthuis, R. A., 1 Jan 2020, In : Metabolic Engineering. 57, p. 228-238 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Metabolomics should be deployed in the identification and characterization of gene-edited crops

Fraser, P. D., Aharoni, A., Hall, R. D., Huang, S., Giovannoni, J. J., Sonnewald, U. & Fernie, A. R., Jun 2020, In : Plant Journal. 102, 5, p. 897-902

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Microbial Engineering for Production of N-Functionalized Amino Acids and Amines

Mindt, M., Walter, T., Kugler, P. & Wendisch, V. F., 13 Mar 2020, In : Biotechnology Journal.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Novel routes towards bioplastics from plants: elucidation of the methylperillate biosynthesis pathway from Salvia dorisiana trichomes

Jongedijk, E., Müller, S., Van Dijk, A. D. J., Schijlen, E., Champagne, A., Boutry, M., Levisson, M., Van Der Krol, S., Bouwmeester, H., Beekwilder, J. & Takahashi, H., 30 May 2020, In : Journal of Experimental Botany. 71, 10, p. 3052-3065

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Plant Aromatic Prenyltransferases: Tools for Microbial Cell Factories

de Bruijn, W. J. C., Levisson, M., Beekwilder, J., van Berkel, W. J. H. & Vincken, J. P., 13 Apr 2020, In : Trends in Biotechnology.

Research output: Contribution to journalArticleAcademicpeer-review

Prevalence of coeliac disease in Northwest China: heterogeneity across Northern Silk road ethnic populations

Zhou, C., Gao, F., Gao, J., Yuan, J., Lu, J., Sun, Z., Xu, M., Engel, J., Hui, W., Gilissen, L. J. W. J. & Chen, H., Jun 2020, In : Alimentary Pharmacology and Therapeutics. 51, 11, p. 1116-1129 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Reciprocal cybrids reveal how organellar genomes affect plant phenotypes

Flood, P. J., Theeuwen, T. P. J. M., Schneeberger, K., Keizer, P., Kruijer, W., Severing, E., Kouklas, E., Hageman, J. A., Wijfjes, R., Calvo-Baltanas, V., Becker, F. F. M., Schnabel, S. K., Willems, L. A. J., Ligterink, W., Van Arkel, J., Mumm, R., Gualberto, J. M., Savage, L., Kramer, D. M., Keurentjes, J. J. B. & 5 others, Van Eeuwijk, F., Koornneef, M., Harbinson, J., Aarts, M. G. M. & Wijnker, E., 13 Jan 2020, In : Nature Plants. 6, 1, p. 13-21

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

Revisiting the Role of Master Regulators in Tomato Ripening

Wang, R., Angenent, G. C., Seymour, G. & de Maagd, R. A., Mar 2020, In : Trends in Plant Science. 25, 3, p. 291-301

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Seed stored mRNAs that are specifically associated to monosome are translationally regulated during germination

Bai, B., Van Der Horst, S., Cordewener, J., America, T., Hanson, J. & Bentsink, L., 6 Jan 2020, In : Plant Physiology. 182, 1, p. 378-392

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)
Open Access

Stimulated biosynthesis of delphinidin-related anthocyanins in tea shoots reducing the quality of green tea in summer

Zhang, Q., Hu, J., Liu, M., Shi, Y., de Vos, C. H. & Ruan, J., 15 Mar 2020, In : Journal of the Science of Food and Agriculture. 100, 4, p. 1505-1514

Research output: Contribution to journalArticleAcademicpeer-review

Symplasmic isolation marks cell fate changes during somatic embryogenesis

Godel-Jedrychowska, K., Kulinska-Lukaszek, K., Horstman, A., Soriano Castan, M., Li, M., Malota, K., Boutilier, K. A. & Kurczynska, E. U., 9 May 2020, In : Journal of Experimental Botany. 71, 9, p. 2612-2628

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access

Variation in secondary metabolites in a unique set of tomato accessions collected in Turkey

Bakir, S., Capanoglu, E., Hall, R. D. & de Vos, R. C. H., 1 Jul 2020, In : Food Chemistry. 317, 126406.

Research output: Contribution to journalArticleAcademicpeer-review

2019

A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters

Witjes, L., Kooke, R., van der Hooft, J. J. J., de Vos, R. C. H., Keurentjes, J. J. B., Medema, M. H. & Nijveen, H., 2 Apr 2019, In : BMC Research Notes. 12, 1, 194.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Alternative Oxidase (AOX) Senses Stress Levels to Coordinate Auxin-Induced Reprogramming From Seed Germination to Somatic Embryogenesis—A Role Relevant for Seed Vigor Prediction and Plant Robustness

Mohanapriya, G., Bharadwaj, R., Noceda, C., Costa, J. H., Kumar, S. R., Sathishkumar, R., Thiers, K. L. L., Santos Macedo, E., Silva, S., Annicchiarico, P., Groot, S. P. C., Kodde, J., Kumari, A., Gupta, K. J. & Arnholdt-Schmitt, B., 20 Sep 2019, In : Frontiers in Plant Science. 10, 1134.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A MYB Triad Controls Primary and Phenylpropanoid Metabolites for Pollen Coat Patterning

Battat, M., Eitan, A., Rogachev, I., Hanhineva, K., Fernie, A., Tohge, T., Beekwilder, J. & Aharoni, A., 1 May 2019, In : Plant Physiology. 180, 1, p. 87-108 22 p.

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)

An analysis of characterized plant sesquiterpene synthases

Durairaj, J., Di Girolamo, A., Bouwmeester, H. J., de Ridder, D., Beekwilder, J. & van Dijk, A. D. J., Feb 2019, In : Phytochemistry. 158, p. 157-165

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)

An insight into antidiabetic properties of six medicinal and edible mushrooms: Inhibition of α-amylase and α-glucosidase linked to type-2 diabetes

Stojkovic, D., Smiljkovic, M., Ciric, A., Glamoclija, J., van Griensven, L., Ferreira, I. C. F. R. & Sokovic, M., 1 Jan 2019, In : South African Journal of Botany. 120, p. 100-103

Research output: Contribution to journalArticleAcademicpeer-review

9 Citations (Scopus)

An Integrated System for the Automated Recording and Analysis of Insect Behavior in T-maze Arrays

Jongsma, M. A., Thoen, H., Poleij, L. M., Wiegers, G. L., Goedhart, P. W., Dicke, M., Noldus, L. P. J. J. & Kruisselbrink, J. W., 29 Jan 2019, In : Frontiers in Plant Science. 10, 20.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Association between vitamin content, plant morphology and geographical origin in a worldwide collection of the orphan crop Gynandropsis gynandra (Cleomaceae)

Sogbohossou, E. O. D., Kortekaas, D., Achigan-Dako, E. G., Maundu, P., Stoilova, T., Van Deynze, A., de Vos, C. H. & Schranz, M. E., Sep 2019, In : Planta. 250, 3, p. 933-947 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Characterization of Male-Produced Aggregation Pheromone of the Bean Flower Thrips Megalurothrips sjostedti (Thysanoptera: Thripidae)

Niassy, S., Tamiru, A., Hamilton, J. G. C., Kirk, W. D. J., Mumm, R., Sims, C., de Kogel, W. J., Ekesi, S., Maniania, N. K., Bandi, K., Mitchell, F. & Subramanian, S., 21 Feb 2019, In : Journal of Chemical Ecology. 45, p. 348-355

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Comparative analysis of repetitive sequences among species from the potato and the tomato clades

Gaiero Guadagna, P., Vaio, M., Peters, S. A., Schranz, M. E., de Jong, J. H. S. G. M. & Speranza, P. R., 15 Feb 2019, In : Annals of Botany. 123, 3, p. 521-532

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Comparative genomics of chytrid fungi reveal insights into the obligate biotrophic and pathogenic lifestyle of Synchytrium endobioticum

van de Vossenberg, B. T. L. H., Warris, S., Nguyen, H. D. T., van Gent-Pelzer, M. P. E., Joly, D. L., van de Geest, H. C., Bonants, P. J. M., Smith, D. S., Lévesque, A. C. & van der Lee, T. A. J., 17 Jun 2019, In : Scientific Reports. 9, 1, 8672.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Comprehensive phenotyping reveals interactions and functions of Arabidopsis thaliana TCP genes in yield determination

van Es, S. W., van der Auweraert, E., Rodrigues da Silveira, S., Angenent, G. C., van Dijk, A. D. J. & Immink, G. H., 22 Mar 2019, In : The Plant Journal.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Defense of pyrethrum flowers: repelling herbivore and recruiting carnivore by producing aphid alarm pheromone

Li, J., Hu, H., Mao, J., Yu, L., Stoopen, G., Wang, M., Mumm, R., de Ruijter, N. C. A., Dicke, M., Jongsma, M. A. & Wang, C., Aug 2019, In : New Phytologist. 223, 3, p. 1607-1620

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Effect of fermentation on content, molecule weight distribution and viscosity of β-glucans in oat sourdough

Lu, J., Shan, L., Xie, Y., Min, F., Gao, J., Guo, L., Ren, C., Yuan, J., Gilissen, L. & Chen, H., 2019, In : International Journal of Food Science and Technology. 54, 1, p. 62-67

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map

Kooke, R., Morgado, L. N., Becker, F. F. M., van Eekelen, H. D. L. M., Hazarika, R., Zhang, Q., de Vos, C. H., Johannes, F. & Keurentjes, J. J. B., 2019, In : Genome Research. 29, 1, p. 96-106

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Genetic variation in phytochemicals in leaves of pepper (Capsicum) in relation to thrips resistance

Maharijaya, A., Vosman, B., Pelgrom, K., Wahyuni, Y., de Vos, R. C. H. & Voorrips, R. E., Feb 2019, In : Arthropod-Plant Interactions. 13, 1, p. 1-9

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards

Lind, A. L., Lai, Y. Y. Y., Mostovoy, Y., Holloway, A. K., Iannucci, A., Mak, A. C. Y., Fondi, M., Orlandini, V., Eckalbar, W. L., Milan, M., Rovatsos, M., Kichigin, I. G., Makunin, A. I., Johnson Pokorná, M., Altmanová, M., Trifonov, V. A., Schijlen, E., Kratochvíl, L., Fani, R., Velenský, P. & 10 others, Rehák, I., Patarnello, T., Jessop, T. S., Hicks, J. W., Ryder, O. A., Mendelson, J. R., Ciofi, C., Kwok, P. Y., Pollard, K. S. & Bruneau, B. G., 29 Jul 2019, In : Nature Ecology and Evolution. 3, 8, p. 1241-1252

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)

Glucosinolate variability between turnip organs during development

Bonnema, G., Lee, J. G., Shuhang, W., Lagarrigue, D., Bucher, J., Wehrens, R., De Vos, R. & Beekwilder, J., 1 Jun 2019, In : PLoS ONE. 14, 6, e0217862.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Identification of Loci Associated with Enhanced Virulence in Spodoptera litura Nucleopolyhedrovirus Isolates Using Deep Sequencing

Zwart, M. P., Ali, G., van Strien, E. A., Schijlen, E. G. W. M., Wang, M., van der Werf, W. & Vlak, J. M., 17 Sep 2019, In : Viruses. 11, 9, 872.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

IgE Cross-Reactivity of Cashew Nut Allergens

Bastiaan-Net, S., Reitsma, M., Cordewener, J. H. G., van der Valk, J. P. M., America, T. A. H. P., Dubois, A. E. J., Gerth van Wijk, R., Savelkoul, H. F. J., de Jong, N. W. & Wichers, H. J., 2019, In : International Archives of Allergy and Immunology. 178, 1, p. 19-32

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)

Impact of Cereal Seed Sprouting on Its Nutritional and Technological Properties: A Critical Review

Lemmens, E., Moroni, A. V., Pagand, J., Heirbaut, P., Ritala, A., Karlen, Y., Kim-Anne, L., van den Broeck, H. C., Brouns, F. J. P. H., De Brier, N. & Delcour, J. A., 2019, In : Comprehensive Reviews in Food Science and Food Safety. 18, 1, p. 305-328

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
11 Citations (Scopus)

Improved inference of intermolecular contacts through protein–protein interaction prediction using coevolutionary analysis

Correa Marrero, M., Immink, G. H., de Ridder, D. & van Dijk, A. D. J., Jun 2019, In : Bioinformatics. 35, 12, p. 2036-2042 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Influence of foliar kaolin application and irrigation on photosynthetic activity of grape berries

Garrido, A., Serôdio, J., Vos, R. D., Conde, A. & Cunha, A., 27 Oct 2019, In : Agronomy. 9, 11, 685.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Insights into heterologous biosynthesis of Arteannuin B and artemisinin in physcomitrella patens

Ikram, N. K. K., Kashkooli, A. B., Peramuna, A., Van Der Krol, A. R., Bouwmeester, H. & Simonsen, H. T., 23 Oct 2019, In : Molecules. 24, 21, 3822.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Light-Induced Vitamin C Accumulation in Tomato Fruits is Independent of Carbohydrate Availability

Ntagkas, N., Woltering, E. J., Bouras, S., de Vos, C. H., Dieleman, J. A., Nicole, C., Labrie, C. W. & Marcelis, L. F. M., 3 Apr 2019, In : Plants. 8, 4, 86.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Long-read annotation: Automated eukaryotic genome annotation based on long-read cDNA sequencing

Cook, D. E., Valle-Inclan, J. E., Pajoro, A., Rovenich, H., Thomma, B. P. H. J. & Faino, L., 1 Jan 2019, In : Plant Physiology. 179, 1, p. 38-54 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
11 Citations (Scopus)
Open Access
11 Citations (Scopus)

maTE: discovering expressed interactions between microRNAs and their targets

Yousef, M., Abddallah, L. & Allmer, J., 15 Oct 2019, In : Bioinformatics. 35, 20, p. 4020-2028 btz204.

Research output: Contribution to journalArticleAcademicpeer-review