Research Output 1989 2020

2020

Development and evaluation of two TaqMan assays for generic detection of Dickeya species

Zijlstra, C., De Haas, L. G., Krijger, M., Verstappen, E., Warris, S., de Haan, E. & van der Wolf, J., Jan 2020, In : European Journal of Plant Pathology. 156, p. 311-316 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Dickeya
assays
DNA
Erwinia chrysanthemi
potatoes

Green and White Asparagus (Asparagus officinalis): A Source of Developmental, Chemical and Urinary Intrigue

Pegiou, I., Mumm, R., Acharya, P., de Vos, C. H. & Hall, R. D., Jan 2020, In : Metabolites. 10, 1, 17.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Asparagus officinalis
asparagus spears
crops
flavor
pyrazines

Identification of bioactive phytochemicals in mulberries

D’urso, G., Mes, J. J., Montoro, P., Hall, R. D. & de Vos, R. C. H., 1 Jan 2020, In : Metabolites. 10, 1, 7.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Morus
Glucosidases
Phytochemicals
Antioxidants
Fruit

Metabolic flux ratio analysis by parallel 13C labeling of isoprenoid biosynthesis in Rhodobacter sphaeroides

Orsi, E., Beekwilder, J., Peek, S., Eggink, G., Kengen, S. W. M. & Weusthuis, R. A., 1 Jan 2020, In : Metabolic Engineering. 57, p. 228-238 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Metabolic Flux Analysis
Rhodobacter sphaeroides
Biosynthesis
Terpenes
Labeling

Reciprocal cybrids reveal how organellar genomes affect plant phenotypes

Flood, P. J., Theeuwen, T. P. J. M., Schneeberger, K., Keizer, P., Kruijer, W., Severing, E., Kouklas, E., Hageman, J. A., Wijfjes, R., Calvo-Baltanas, V., Becker, F. F. M., Schnabel, S. K., Willems, L. A. J., Ligterink, W., Van Arkel, J., Mumm, R., Gualberto, J. M., Savage, L., Kramer, D. M., Keurentjes, J. J. B. & 5 others, Van Eeuwijk, F., Koornneef, M., Harbinson, J., Aarts, M. G. M. & Wijnker, E., 1 Jan 2020, In : Nature Plants. 6, 1, p. 13-21

Research output: Contribution to journalArticleAcademicpeer-review

cybrids
phenotype
haploidy
genome
chloroplast DNA

Revisiting the Role of Master Regulators in Tomato Ripening

Wang, R., Angenent, G. C., Seymour, G. & de Maagd, R. A., 8 Jan 2020, In : Trends in Plant Science.

Research output: Contribution to journalArticleAcademicpeer-review

mutagenesis
ripening
tomatoes
needs assessment
gene targeting

Seed stored mRNAs that are specifically associated to monosome are translationally regulated during germination

Bai, B., Van Der Horst, S., Cordewener, J., America, T., Hanson, J. & Bentsink, L., 6 Jan 2020, In : Plant Physiology. 182, 1, p. 378-392

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Stored Messenger RNA
Germination
Seeds
germination
seeds
2019

A blueprint of seed desiccation sensitivity in the genome of Castanospermum australe

Correia Silva Santana Marques, A., Dias Costa, M. C., Chathuri, U., Jonkheer, E., Zhao, T., Schijlen, E. G. W. M., Derks, M. F. L., Nijveen, H., Marcet-Houben, M., Julca, I., Delahaie, J., Schranz, E., Gabaldon, T., Pelletier, S., Leprince, O., Ligterink, W., Buitink, J., Hilhorst, H. W. M. & Farrant, J. M., 10 Jun 2019.

Research output: Working paperAcademic

Open Access
Castanospermum australe
desiccation (plant physiology)
genome
seeds
legumes

A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters

Witjes, L., Kooke, R., van der Hooft, J. J. J., de Vos, R. C. H., Keurentjes, J. J. B., Medema, M. H. & Nijveen, H., 2 Apr 2019, In : BMC Research Notes. 12, 1, 194.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Plant Genes
Metabolomics
Multigene Family
Genes
Metabolites

Alternative Oxidase (AOX) Senses Stress Levels to Coordinate Auxin-Induced Reprogramming From Seed Germination to Somatic Embryogenesis—A Role Relevant for Seed Vigor Prediction and Plant Robustness

Mohanapriya, G., Bharadwaj, R., Noceda, C., Costa, J. H., Kumar, S. R., Sathishkumar, R., Thiers, K. L. L., Santos Macedo, E., Silva, S., Annicchiarico, P., Groot, S. P. C., Kodde, J., Kumari, A., Gupta, K. J. & Arnholdt-Schmitt, B., 20 Sep 2019, In : Frontiers in Plant Science. 10, 1134.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
vigor
auxins
seed germination
somatic embryogenesis
prediction
4 Citations (Scopus)

A MYB Triad Controls Primary and Phenylpropanoid Metabolites for Pollen Coat Patterning

Battat, M., Eitan, A., Rogachev, I., Hanhineva, K., Fernie, A., Tohge, T., Beekwilder, J. & Aharoni, A., 1 May 2019, In : Plant Physiology. 180, 1, p. 87-108 22 p.

Research output: Contribution to journalArticleAcademicpeer-review

Petunia
phenylpropanoids
Pollen
Arabidopsis
pollen
3 Citations (Scopus)

An analysis of characterized plant sesquiterpene synthases

Durairaj, J., Di Girolamo, A., Bouwmeester, H. J., de Ridder, D., Beekwilder, J. & van Dijk, A. D. J., Feb 2019, In : Phytochemistry. 158, p. 157-165

Research output: Contribution to journalArticleAcademicpeer-review

Sesquiterpenes
sesquiterpenoids
terpenoids
Databases
Mutagenesis
4 Citations (Scopus)

An insight into antidiabetic properties of six medicinal and edible mushrooms: Inhibition of α-amylase and α-glucosidase linked to type-2 diabetes

Stojkovic, D., Smiljkovic, M., Ciric, A., Glamoclija, J., van Griensven, L., Ferreira, I. C. F. R. & Sokovic, M., 1 Jan 2019, In : South African Journal of Botany. 120, p. 100-103

Research output: Contribution to journalArticleAcademicpeer-review

hypoglycemic agents
glucosidases
noninsulin-dependent diabetes mellitus
amylases
mushrooms

An Integrated System for the Automated Recording and Analysis of Insect Behavior in T-maze Arrays

Jongsma, M. A., Thoen, H., Poleij, L. M., Wiegers, G. L., Goedhart, P. W., Dicke, M., Noldus, L. P. J. J. & Kruisselbrink, J. W., 29 Jan 2019, In : Frontiers in Plant Science. 10, 20.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
insect behavior
insects
statistics
Thysanoptera
leaves

Application of high performance compute technology in bioinformatics

Warris, S., 2019, Wageningen: Wageningen University. 156 p.

Research output: Thesisinternal PhD, WU

Open Access
Bioinformatics
Genes
Free energy
DNA
RNA
1 Citation (Scopus)

Association between vitamin content, plant morphology and geographical origin in a worldwide collection of the orphan crop Gynandropsis gynandra (Cleomaceae)

Sogbohossou, E. O. D., Kortekaas, D., Achigan-Dako, E. G., Maundu, P., Stoilova, T., Van Deynze, A., de Vos, C. H. & Schranz, M. E., Sep 2019, In : Planta. 250, 3, p. 933-947 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cleomaceae
Gynandropsis gynandra
vitamin content
Tocopherols
plant morphology
3 Citations (Scopus)

Characterization of Male-Produced Aggregation Pheromone of the Bean Flower Thrips Megalurothrips sjostedti (Thysanoptera: Thripidae)

Niassy, S., Tamiru, A., Hamilton, J. G. C., Kirk, W. D. J., Mumm, R., Sims, C., de Kogel, W. J., Ekesi, S., Maniania, N. K., Bandi, K., Mitchell, F. & Subramanian, S., 21 Feb 2019, In : Journal of Chemical Ecology. 45, p. 348-355

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Megalurothrips sjostedti
Thysanoptera
aggregation pheromone
Thrips (Thripidae)
aggregation pheromones
3 Citations (Scopus)

Comparative analysis of repetitive sequences among species from the potato and the tomato clades

Gaiero Guadagna, P., Vaio, M., Peters, S. A., Schranz, M. E., de Jong, J. H. S. G. M. & Speranza, P. R., 15 Feb 2019, In : Annals of Botany. 123, 3, p. 521-532

Research output: Contribution to journalArticleAcademicpeer-review

repetitive sequences
tomatoes
potatoes
genome
Solanum etuberosum
2 Citations (Scopus)

Comparative genomics of chytrid fungi reveal insights into the obligate biotrophic and pathogenic lifestyle of Synchytrium endobioticum

van de Vossenberg, B. T. L. H., Warris, S., Nguyen, H. D. T., van Gent-Pelzer, M. P. E., Joly, D. L., van de Geest, H. C., Bonants, P. J. M., Smith, D. S., Lévesque, A. C. & van der Lee, T. A. J., 17 Jun 2019, In : Scientific Reports. 9, 1, 8672.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Synchytrium endobioticum
Chytridiomycota
lifestyle
genomics
fungi
3 Citations (Scopus)

Comprehensive phenotyping reveals interactions and functions of Arabidopsis thaliana TCP genes in yield determination

van Es, S. W., van der Auweraert, E., Rodrigues da Silveira, S., Angenent, G. C., van Dijk, A. D. J. & Immink, G. H., 22 Mar 2019, In : The Plant Journal.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Arabidopsis
seed yield
Arabidopsis thaliana
vegetative growth
phenotype

Coupling DAD and MS data in untargeted metabolomics

Wehrens, H. R. M. J., Engel, J., van Treuren, R., de Vos, R., Haug, K. & Rocca-Serra, P., 2019.

Research output: Contribution to conferencePosterAcademic

Open Access
2 Citations (Scopus)

CRISPR/Cas inactivation of RECQ4 increases homeologous crossovers in an interspecific tomato hybrid

de Maagd, R. A., Loonen, A., Chouaref, J., Pelé, A., Meijer-Dekens, F., Fransz, P. & Bai, Y., 4 Sep 2019, In : Plant Biotechnology Journal.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
Lycopersicon esculentum
inactivation
tomatoes
wild relatives

Defense of pyrethrum flowers: repelling herbivore and recruiting carnivore by producing aphid alarm pheromone

Li, J., Hu, H., Mao, J., Yu, L., Stoopen, G., Wang, M., Mumm, R., de Ruijter, N. C. A., Dicke, M., Jongsma, M. A. & Wang, C., Aug 2019, In : New Phytologist. 223, 3, p. 1607-1620

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chrysanthemum cinerariifolium
alarm pheromones
Aphids
Herbivory
Pheromones

Developing a stronger and better - tasting mushroom with unique features: An innovative multi-disciplinary approach

Baars, J., Mumm, R., Stijger, I., Engel, J. & Wehrens, R., 2019, Wageningen: Stichting Wageningen Research, Wageningen Plant Research, Business unit Plant Breeding. 36 p. (Rapport / Stichting Wageningen Research, Wageningen Plant Research, Business unit Plant Breeding; no. 2019-1)

Research output: Book/ReportReportProfessional

Open Access

Development of Offshore Seaweed Cultivation: food safety, cultivation, ecology and economy : synthesis report 2018

Jansen, H. M., Tonk, L., van der Werf, A., van der Meer, I., van Tuinen, S., van der Burg, S., Veen, J., Bronswijk, L. & Brouwers, E., 2019, IJmuiden: Wageningen Marine Research. 17 p. (Wageningen Marine Research report; no. C012/19)

Research output: Book/ReportReportProfessional

Open Access
1 Citation (Scopus)

Effect of fermentation on content, molecule weight distribution and viscosity of β-glucans in oat sourdough

Lu, J., Shan, L., Xie, Y., Min, F., Gao, J., Guo, L., Ren, C., Yuan, J., Gilissen, L. & Chen, H., 2019, In : International Journal of Food Science and Technology. 54, 1, p. 62-67

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
sourdough
Glucans
glucans
Viscosity
Fermentation
Open Access
nutritive value
crops
food quality
Netherlands
students

Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map

Kooke, R., Morgado, L. N., Becker, F. F. M., van Eekelen, H. D. L. M., Hazarika, R., Zhang, Q., de Vos, C. H., Johannes, F. & Keurentjes, J. J. B., 2019, In : Genome Research. 29, 1, p. 96-106

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Metabolome
Arabidopsis
Epigenomics
Phenotype
RNA
4 Citations (Scopus)

Genetic variation in phytochemicals in leaves of pepper (Capsicum) in relation to thrips resistance

Maharijaya, A., Vosman, B., Pelgrom, K., Wahyuni, Y., de Vos, R. C. H. & Voorrips, R. E., Feb 2019, In : Arthropod-Plant Interactions. 13, 1, p. 1-9

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
thrips
Capsicum
sweet peppers
Thysanoptera
phytopharmaceuticals
3 Citations (Scopus)

Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards

Lind, A. L., Lai, Y. Y. Y., Mostovoy, Y., Holloway, A. K., Iannucci, A., Mak, A. C. Y., Fondi, M., Orlandini, V., Eckalbar, W. L., Milan, M., Rovatsos, M., Kichigin, I. G., Makunin, A. I., Johnson Pokorná, M., Altmanová, M., Trifonov, V. A., Schijlen, E., Kratochvíl, L., Fani, R., Velenský, P. & 10 others, Rehák, I., Patarnello, T., Jessop, T. S., Hicks, J. W., Ryder, O. A., Mendelson, J. R., Ciofi, C., Kwok, P. Y., Pollard, K. S. & Bruneau, B. G., 29 Jul 2019, In : Nature Ecology and Evolution. 3, 8, p. 1241-1252

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
lizard
lizards
genome
reptile
anticoagulant

Glucosinolate variability between turnip organs during development

Bonnema, G., Lee, J. G., Shuhang, W., Lagarrigue, D., Bucher, J., Wehrens, R., De Vos, R. & Beekwilder, J., 1 Jun 2019, In : PLoS ONE. 14, 6, e0217862.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Glucosinolates
Brassica napus
turnips
glucosinolates
tubers

Identification of Loci Associated with Enhanced Virulence in Spodoptera litura Nucleopolyhedrovirus Isolates Using Deep Sequencing

Zwart, M. P., Ali, G., van Strien, E. A., Schijlen, E. G. W. M., Wang, M., van der Werf, W. & Vlak, J. M., 17 Sep 2019, In : Viruses. 11, 9, 872.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Biological Control Agents
Central Asia
Nucleopolyhedrovirus
High-Throughput Nucleotide Sequencing
Spodoptera
4 Citations (Scopus)

IgE Cross-Reactivity of Cashew Nut Allergens

Bastiaan-Net, S., Reitsma, M., Cordewener, J. H. G., van der Valk, J. P. M., America, T. A. H. P., Dubois, A. E. J., Gerth van Wijk, R., Savelkoul, H. F. J., de Jong, N. W. & Wichers, H. J., 2019, In : International Archives of Allergy and Immunology. 178, 1, p. 19-32

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Anacardium
Nuts
Allergens
Immunoglobulin E
Anacardiaceae
5 Citations (Scopus)

Impact of Cereal Seed Sprouting on Its Nutritional and Technological Properties: A Critical Review

Lemmens, E., Moroni, A. V., Pagand, J., Heirbaut, P., Ritala, A., Karlen, Y., Kim-Anne, L., van den Broeck, H. C., Brouns, F. J. P. H., De Brier, N. & Delcour, J. A., 2019, In : Comprehensive Reviews in Food Science and Food Safety. 18, 1, p. 305-328

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
sprouting
Seeds
Food
Insurance Benefits
seeds
1 Citation (Scopus)
Protein-protein Interaction
Contact
Proteins
Protein
Mutation
1 Citation (Scopus)

Influence of foliar kaolin application and irrigation on photosynthetic activity of grape berries

Garrido, A., Serôdio, J., Vos, R. D., Conde, A. & Cunha, A., 27 Oct 2019, In : Agronomy. 9, 11, 685.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
kaolin
grapes
irrigation
small fruits
exocarp

Insights into heterologous biosynthesis of Arteannuin B and artemisinin in physcomitrella patens

Ikram, N. K. K., Kashkooli, A. B., Peramuna, A., Van Der Krol, A. R., Bouwmeester, H. & Simonsen, H. T., 23 Oct 2019, In : Molecules. 24, 21, 3822.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Bryopsida
biosynthesis
Biosynthesis
genes
Genes
4 Citations (Scopus)

Light-Induced Vitamin C Accumulation in Tomato Fruits is Independent of Carbohydrate Availability

Ntagkas, N., Woltering, E. J., Bouras, S., de Vos, C. H., Dieleman, J. A., Nicole, C., Labrie, C. W. & Marcelis, L. F. M., 3 Apr 2019, In : Plants. 8, 4, 86.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
ascorbic acid
tomatoes
carbohydrates
fruits
myo-inositol
8 Citations (Scopus)

Long-read annotation: Automated eukaryotic genome annotation based on long-read cDNA sequencing

Cook, D. E., Valle-Inclan, J. E., Pajoro, A., Rovenich, H., Thomma, B. P. H. J. & Faino, L., 1 Jan 2019, In : Plant Physiology. 179, 1, p. 38-54 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
complementary DNA
DNA Sequence Analysis
sequence analysis
Complementary DNA
Genome
4 Citations (Scopus)
Open Access
Processed foods
Metabolomics
Flavors
Mass spectrometry
Mass Spectrometry

maTE: discovering expressed interactions between microRNAs and their targets

Yousef, M., Abddallah, L. & Allmer, J., 15 Oct 2019, In : Bioinformatics. 35, 20, p. 4020-2028 btz204.

Research output: Contribution to journalArticleAcademicpeer-review

MicroRNA
MicroRNAs
Gene expression
Classifiers
Genes

Measurement Technologies

Yanes, O., Hollywood, K., Mumm, R., Vinaixa, M., Rankin, N., Wehrens, H. R. M. J. & Salek, R., 19 Aug 2019, Metabolomics: Practical Guide to Design and Analysis. Wehrens, R. & Salek, R. (eds.). 1st ed. New York: Chapman and Hall, 38 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mass spectrometry
Capillary electrophoresis
Liquid chromatography
Metabolites
Ultraviolet spectroscopy
1 Citation (Scopus)

Metabolomics of Thrips Resistance in Pepper (Capsicum spp.) Reveals Monomer and Dimer Acyclic Diterpene Glycosides as Potential Chemical Defenses

Macel, M., Visschers, I. S. G., Peters, J., Kappers, I. F., de Vos, C. H. & van Dam, N. M., Jun 2019, In : Journal of Chemical Ecology. 45, 5-6, p. 490-501 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Thysanoptera
Thrips (Thripidae)
Capsicum
thrips
Metabolomics
1 Citation (Scopus)

Morphological and Molecular Characterization of Orchid Fruit Development

Dirks-Mulder, A., Ahmed, I., uit het Broek, M., Krol, L., Menger, N., Snier, J., van Winzum, A., de Wolf, A., van 't Wout, M., Zeegers, J. J., Butôt, R., Heijungs, R., Van Heuven, B. J., Kruizinga, J., Langelaan, R., Smets, E. F., Star, W., Bemer, M. & Gravendeel, B., 19 Feb 2019, In : Frontiers in Plant Science. 10, 18 p., 137.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
fruiting
fruits
dehiscence
Angiospermae
seed shattering

Novel and Stable Dual-Color IL-6 and IL-10 Reporters Derived from RAW 264.7 for Anti-Inflammation Screening of Natural Products

Saiki, P., Kawano, Y., Nakajima, Y., Van Griensven, L. J. L. D. & Miyazaki, K., 18 Sep 2019, In : International Journal of Molecular Sciences. 20, 18, 4620.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
interleukins
Biological Products
Interleukin-10
Bioluminescence
Interleukin-6

Pseudo-chromosome-length genome assembly of a double haploid "Bartlett" pear (Pyrus communis L.)

Linsmith, G., Rombauts, S., Montanari, S., Deng, C. H., Celton, J. M., Guérif, P., Liu, C., Lohaus, R., Zurn, J. D., Cestaro, A., Bassil, N. V., Bakker, L. V., Schijlen, E., Gardiner, S. E., Lespinasse, Y., Durel, C. E., Velasco, R., Neale, D. B., Chagné, D., Van de Peer, Y. & 2 others, Troggio, M. & Bianco, L., Dec 2019, In : GigaScience. 8, 12, giz138.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Pyrus
Haploidy
Chromosomes
Genes
Genome
1 Citation (Scopus)

Pyrethric acid of natural pyrethrin insecticide: complete pathway elucidation and reconstitution in Nicotiana benthamiana

Xu, H., Li, W., Schilmiller, A. L., van Eekelen, H. D. L. M., de Vos, C. H., Jongsma, M. A. & Pichersky, E., Jul 2019, In : New Phytologist. 223, 2, p. 751-765

Research output: Contribution to journalArticleAcademicpeer-review

Pyrethrins
Nicotiana benthamiana
Insecticides
pyrethrins
Tobacco
4 Citations (Scopus)

QTL mapping of insect resistance components of Solanum galapagense

Vosman, B., Kashaninia, A., van’t Westende, W., Meijer-Dekens, F., van Eekelen, H., Visser, R. G. F., de Vos, R. C. H. & Voorrips, R. E., Feb 2019, In : Theoretical and Applied Genetics. 132, 2, p. 531–541

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Solanum galapagense
Trichomes
Solanum
trichomes
Insects