Research Output

Filter
Article
2020

CRISPR/Cas inactivation of RECQ4 increases homeologous crossovers in an interspecific tomato hybrid

de Maagd, R. A., Loonen, A., Chouaref, J., Pelé, A., Meijer-Dekens, F., Fransz, P. & Bai, Y., Mar 2020, In : Plant Biotechnology Journal. 18, 3, p. 805-813

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)
Open Access

Revisiting the Role of Master Regulators in Tomato Ripening

Wang, R., Angenent, G. C., Seymour, G. & de Maagd, R. A., Mar 2020, In : Trends in Plant Science. 25, 3, p. 291-301

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)
Open Access

Symplasmic isolation marks cell fate changes during somatic embryogenesis

Godel-Jedrychowska, K., Kulinska-Lukaszek, K., Horstman, A., Soriano Castan, M., Li, M., Malota, K., Boutilier, K. A. & Kurczynska, E. U., 9 May 2020, In : Journal of Experimental Botany. 71, 9, p. 2612-2628

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access
1 Citation (Scopus)
2019

Alternative Oxidase (AOX) Senses Stress Levels to Coordinate Auxin-Induced Reprogramming From Seed Germination to Somatic Embryogenesis—A Role Relevant for Seed Vigor Prediction and Plant Robustness

Mohanapriya, G., Bharadwaj, R., Noceda, C., Costa, J. H., Kumar, S. R., Sathishkumar, R., Thiers, K. L. L., Santos Macedo, E., Silva, S., Annicchiarico, P., Groot, S. P. C., Kodde, J., Kumari, A., Gupta, K. J. & Arnholdt-Schmitt, B., 20 Sep 2019, In : Frontiers in Plant Science. 10, 1134.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Comprehensive phenotyping reveals interactions and functions of Arabidopsis thaliana TCP genes in yield determination

van Es, S. W., van der Auweraert, E., Rodrigues da Silveira, S., Angenent, G. C., van Dijk, A. D. J. & Immink, G. H., 22 Mar 2019, In : The Plant Journal.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Improved inference of intermolecular contacts through protein–protein interaction prediction using coevolutionary analysis

Correa Marrero, M., Immink, G. H., de Ridder, D. & van Dijk, A. D. J., Jun 2019, In : Bioinformatics. 35, 12, p. 2036-2042 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Long-read annotation: Automated eukaryotic genome annotation based on long-read cDNA sequencing

Cook, D. E., Valle-Inclan, J. E., Pajoro, A., Rovenich, H., Thomma, B. P. H. J. & Faino, L., 1 Jan 2019, In : Plant Physiology. 179, 1, p. 38-54 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
12 Citations (Scopus)

Morphological and Molecular Characterization of Orchid Fruit Development

Dirks-Mulder, A., Ahmed, I., uit het Broek, M., Krol, L., Menger, N., Snier, J., van Winzum, A., de Wolf, A., van 't Wout, M., Zeegers, J. J., Butôt, R., Heijungs, R., Van Heuven, B. J., Kruizinga, J., Langelaan, R., Smets, E. F., Star, W., Bemer, M. & Gravendeel, B., 19 Feb 2019, In : Frontiers in Plant Science. 10, 18 p., 137.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Re-evaluation of transcription factor function in tomato fruit development and ripening with CRISPR/Cas9-mutagenesis

Wang, R., da Rocha Tavano, E. C., Lammers, M., Martinelli, A. P., Angenent, G. C. & de Maagd, R. A., 8 Feb 2019, In : Scientific Reports. 9, 1, 1696.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
16 Citations (Scopus)

Seed maturation and post-harvest ripening negatively affect arabidopsis somatic embryogenesis

Wu, H., Chen, B., Fiers, M., Wróbel-Marek, J., Kodde, J., Groot, S. P. C., Angenent, G., Feng, H., Bentsink, L. & Boutilier, K., Oct 2019, In : Plant Cell, Tissue and Organ Culture. 139, 1, p. 17-27

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

The SAUR gene family: the plant’s toolbox for adaptation of growth and development

Stortenbeker, N. & Bemer, M., 1 Jan 2019, In : Journal of Experimental Botany. 70, 1, p. 17-27

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
12 Citations (Scopus)
2018

A molecular network for functional versatility of HECATE transcription factors

Gaillochet, C., Jamge, S., van der Wal, F., Angenent, G., Immink, R. & Lohmann, J. U., 1 Jul 2018, In : Plant Journal. 95, 1, p. 57-70

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Arabidopsis thaliana ambient temperature responsive lncRNAs

Severing, E., Faino, L., Jamge, S., Busscher, M., Kuijer-Zhang, Y., Bellinazzo, F., Busscher-Lange, J., Fernández, V., Angenent, G. C., Immink, R. G. H. & Pajoro, A., 13 Jul 2018, In : BMC Plant Biology. 18, 1, 145.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)

A seed treatment to prevent shoot apical meristem arrest in Brassica oleracea

de Jonge, J., Goffman, F. D., Kodde, J., Angenent, G. C. & Groot, S. P. C., 26 Jan 2018, In : Scientia Horticulturae. 228, p. 76-80

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana

Aerts, N., de Bruijn, S., van Mourik, H., Angenent, G. C. & van Dijk, A. D. J., 25 Jun 2018, In : BMC Plant Biology. 18, 1, 131.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)
3 Citations (Scopus)

Engineering storage capacity for volatile sesquiterpenes in Nicotiana benthamiana leaves

Delatte, T. L., Scaiola, G., Molenaar, J., de Sousa Farias, K., Alves Gomes Albertti, L., Busscher, J., Verstappen, F., Carollo, C., Bouwmeester, H. & Beekwilder, J., Dec 2018, In : Plant Biotechnology Journal. 16, 12, p. 1997-2006

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Genetic control of meristem arrest and life span in Arabidopsis by a FRUITFULL-APETALA2 pathway

Balanzà, V., Martínez-Fernández, I., Sato, S., Yanofsky, M. F., Kaufmann, K., Angenent, G. C., Bemer, M. & Ferrándiz, C., 8 Feb 2018, In : Nature Communications. 9, 1, 565.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
28 Citations (Scopus)

Novel functions of the Arabidopsis transcription factor TCP5 in petal development and ethylene biosynthesis

van Es, S. W., Silveira, S. R., Rocha, D. I., Bimbo, A., Martinelli, A. P., Dornelas, M. C., Angenent, G. C. & Immink, G. H., Jun 2018, In : The Plant Journal. 94, 5, p. 867-879

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
12 Citations (Scopus)

PISTILLATA paralogs in Tarenaya hassleriana have diverged in interaction specificity

de Bruijn, S., Zhao, T., Muiño, J. M., Schranz, E. M., Angenent, G. C. & Kaufmann, K., 22 Dec 2018, In : BMC Plant Biology. 18, 1, 368.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Rapid loss of seed viability in ex situ conserved wheat and barley at 4°C as compared to −20°C storage

van Treuren, R., Bas, N., Kodde, J., Groot, S. P. C. & Kik, C., 25 Jun 2018, In : Conservation Physiology. 6, 1, coy033.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Role of Tulipa gesneriana TEOSINTE BRANCHED1 (TgTB1) in the control of axillary bud outgrowth in bulbs

Moreno-Pachon, N. M., Mutimawurugo, M. C., Heynen, E., Sergeeva, L., Benders, A., Blilou, I., Hilhorst, H. W. M. & Immink, R. G. H., Jun 2018, In : Plant Reproduction. 31, 2, p. 145-157

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Seed dormancy release accelerated by elevated partial pressure of oxygen is associated with DOG loci

Buijs, G., Kodde, J., Groot, S. P. C. & Bentsink, L., 27 Jun 2018, In : Journal of Experimental Botany. 69, 15, p. 3601-3608

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)
2017

Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP i cascade in Arabidopsis axillary buds

Gonzalez-Grandio, E., Pajoro, A., Franco-Zorrilla, J. M., Tarancon, C., Immink, R. G. H. & Cubas, P., 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 2, p. E245-E254

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
67 Citations (Scopus)

A cautionary note on the use of chromosome conformation capture in plants

Jamge, S., Stam, M., Angenent, G. C. & Immink, R. G. H., 16 Nov 2017, In : Plant Methods. 13, 1, 101.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A plant-based chemical genomics screen for the identification of flowering inducers

Fiers, M., Hoogenboom, J., Brunazzi, A., Wennekes, T., Angenent, G. C. & Immink, R. G. H., 3 Oct 2017, In : Plant Methods. 13, 9 p., 78.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

A transcriptional view on somatic embryogenesis

Horstman, A., Bemer, M. & Boutilier, K. A., 1 Aug 2017, In : Regeneration. 4, 4, p. 201-216

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Cross-Family Transcription Factor Interactions: An Additional Layer of Gene Regulation

Bemer, M., van Dijk, A-J., Immink, R. G. H. & Angenent, G. C., 2017, In : Trends in Plant Science. 22, 1, p. 66-80

Research output: Contribution to journalArticleAcademicpeer-review

34 Citations (Scopus)

Differences in DNA binding specificity of floral homeotic protein complexes predict organ-specific target genes

Smaczniak, C., Muiño, J. M., Chen, D., Angenent, G. C. & Kaufmann, K., 2017, In : The Plant Cell. 29, 8, p. 1822-1835

Research output: Contribution to journalArticleAcademicpeer-review

16 Citations (Scopus)

Divergent regulation of Arabidopsis SAUR genes: A focus on the SAUR10-clade

van Mourik, H., van Dijk, A. D. J., Stortenbeker, N., Angenent, G. C. & Bemer, M., 19 Dec 2017, In : BMC Plant Biology. 17, 245.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
13 Citations (Scopus)

Don't waste your efforts

Groot, S. P. C., 8 Oct 2017, In : Prophyta - Focus on Europe. p. 32-34

Research output: Contribution to journalArticleProfessional

Open Access

FRUITFULL controls SAUR10 expression and regulates Arabidopsis growth and architecture

Bemer, M., van Mourik, H., Muiño, J. M., Ferrándiz, C., Kaufmann, K. & Angenent, G. C., 15 Jun 2017, In : Journal of Experimental Botany. 68, 13, p. 3391-3403

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
26 Citations (Scopus)

Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping

Thoen, H. P. M., Davila Olivas, N. H., Kloth, K. J., Coolen, S., Huang, P., Aarts, M. G. M., Molenaar, J. A., Bakker, J., Bouwmeester, H. J., Broekgaarden, C., Bucher, J., Busscher-Lange, J., Cheng, X., van Dijk-Fradin, E. F., Jongsma, M. A., Julkowska, M. M., Keurentjes, J. J. B., Ligterink, W., Pieterse, C. M. J., Ruyter-Spira, C. P. & 13 others, Smant, G., van Schaik, C. C., van Wees, S. C. M., Visser, R. G. F., Voorrips, R. E., Vosman, B., Vreugdenhil, D., Warmerdam, S., Wiegers, G. L., van Heerwaarden, J., Kruijer, W. T., van Eeuwijk, F. A. & Dicke, M., 2017, In : New Phytologist. 213, 3, p. 1346-1362

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
63 Citations (Scopus)

Histone H3 lysine 36 methylation affects temperature-induced alternative splicing and flowering in plants

Pajoro, A., Severing, E., Angenent, G. C. & Immink, R. G. H., 2017, In : Genome Biology. 18, 12 p., 102.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
38 Citations (Scopus)

Molecular regulation of temperature-dependent floral induction in Tulipa gesneriana

Leeggangers, M., Nijveen, H., Bigas, J. N., Hilhorst, H. W. M. & Immink, R. G. H., 2017, In : Plant Physiology. 173, 3, p. 1904-1919

Research output: Contribution to journalArticleAcademicpeer-review

10 Citations (Scopus)

Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation

Zhao, T., Holmer, R., de Bruijn, S. A., Angenent, G. C., van den Burg, H. A. & Schranz, M. E., 7 Jul 2017, In : The Plant Cell. 29, 6, p. 1278-1292

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
26 Citations (Scopus)

Re-sequencing transgenic plants revealed rearrangements at T-DNA inserts, and integration of a short T-DNA fragment, but no increase of small mutations elsewhere

Schouten, H. J., van de Geest, H., Papadimitriou, S., Bemer, M., Schaart, J. G., Smulders, R., Perez, G. S. & Schijlen, E., Mar 2017, In : Plant Cell Reports. 36, 3, p. 493-504

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
17 Citations (Scopus)

SIEVE ELEMENT-LINING CHAPERONE1 restricts aphid feeding on arabidopsis during heat stress

Kloth, K. J., Busscher-Lange, J., Wiegers, G. L., Kruijer, W., Buijs, G., Meyer, R. C., Albrectsen, B. R., Bouwmeester, H. J., Dicke, M. & Jongsma, M. A., 1 Oct 2017, In : Plant Cell. 29, 10, p. 2450-2464

Research output: Contribution to journalArticleAcademicpeer-review

14 Citations (Scopus)

Splicing-related genes are alternatively spliced upon changes in ambient temperatures in plants

Verhage, D. S. L., Severing, E., Bucher, J., Lammers, M., Busscher-Lange, J., Bonnema, A. B., Rodenburg, N., Proveniers, M. C. G., Angenent, G. C. & Immink, G. H., 2017, In : PLoS ONE. 12, 3, e0172950.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
23 Citations (Scopus)

The BABY BOOM transcription factor activates the LEC1-ABI3-FUS3-LEC2 network to induce somatic embryogenesis

Horstman, A., Li, M., Heidmann, I., Weemen, M., Chen, B., Muino, J. M., Angenent, G. C. & Boutilier, K., Oct 2017, In : Plant Physiology. 175, 2, p. 848-857

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
54 Citations (Scopus)

The origin of floral organ identity quartets

Ruelens, P., Zhang, Z., van Mourik, H., Maere, S., Kaufmann, K. & Geuten, K., 2017, In : The Plant Cell. 29, 2, p. 229-242

Research output: Contribution to journalArticleAcademicpeer-review

14 Citations (Scopus)

The physiological and neuroendocrine correlates of hunger in the Red Junglefowl (Gallus gallus)

Lees, J. J., Lindholm, C., Batakis, P., Busscher, M. & Altimiras, J., 1 Dec 2017, In : Scientific Reports. 7, 1, 17984.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Visualization of BRI1 and SERK3/BAK1 nanoclusters in Arabidopsis roots

Hutten, S. J., Hamers, D. S., Den Toorn, M. A., Van Esse, W., Nolles, A., Bücherl, C. A., De Vries, S. C., Hohlbein, J. & Borst, J., 2017, In : PLoS ONE. 12, 1, e0169905.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
17 Citations (Scopus)
2016

Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana

Lozano-Sotomayor, P., Chávez Montes, R. A., Silvestre-Vañó, M., Herrera-Ubaldo, H., Greco, R., Pablo-Villa, J., Galliani, B. M., Diaz-Ramirez, D., Weemen, M. & Boutilier, K., 1 Nov 2016, In : The Plant Journal. 88, 3, p. 437-451 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

10 Citations (Scopus)

AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling

Kloth, K. J., Wiegers, G. L., Busscher-Lange, J., van Haarst, J. C., Kruijer, W. T., Bouwmeester, H. J., Dicke, M. & Jongsma, M. A., 23 Apr 2016, In : Journal of Experimental Botany. 67, 1, p. 3383-3396

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
36 Citations (Scopus)

Barley seed aging: Genetics behind the dry elevated pressure of oxygen aging and moist controlled deterioration

Nagel, M., Kodde, J., Pistrick, S., Mascher, M., Börner, A. & Groot, S. P. C., 2016, In : Frontiers in Plant Science. 7, 388.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
15 Citations (Scopus)

Chromatin and epigenetics in all their states: Meeting report of the first conference on Epigenetic and Chromatin Regulation of Plant Traits - January 14 – 15, 2016 - Strasbourg, France

Bey, T., Jamge, S., Klemme, S., Komar, D. N., Le Gall, S., Mikulski, P., Schmidt, M., Zicola, J. & Berr, A., 2016, In : Epigenetics. 11, 8, p. 625-634

Research output: Contribution to journalArticleAcademicpeer-review