Research Output 2006 2020

2017

Mechanisms of vegetative propagation in bulbs: a molecular approach

Moreno-Pachón, N., 2017, Wageningen: Wageningen University. 178 p.

Research output: Thesisinternal PhD, WU

Open Access
vegetative propagation
Lilium
bulbs
Tulipa
buds
7 Citations (Scopus)

Molecular regulation of temperature-dependent floral induction in Tulipa gesneriana

Leeggangers, M., Nijveen, H., Bigas, J. N., Hilhorst, H. W. M. & Immink, R. G. H., 2017, In : Plant Physiology. 173, 3, p. 1904-1919

Research output: Contribution to journalArticleAcademicpeer-review

Tulipa
Tulipa gesneriana
Temperature
flowering
Arabidopsis
22 Citations (Scopus)

Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation

Zhao, T., Holmer, R., de Bruijn, S. A., Angenent, G. C., van den Burg, H. A. & Schranz, M. E., 7 Jul 2017, In : The Plant Cell. 29, 6, p. 1278-1292

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Synteny
transposition (genetics)
Transcription Factors
transcription factors
Genes
13 Citations (Scopus)

Re-sequencing transgenic plants revealed rearrangements at T-DNA inserts, and integration of a short T-DNA fragment, but no increase of small mutations elsewhere

Schouten, H. J., van de Geest, H., Papadimitriou, S., Bemer, M., Schaart, J. G., Smulders, R., Perez, G. S. & Schijlen, E., Mar 2017, In : Plant Cell Reports. 36, 3, p. 493-504

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
transgenic plants
mutation
DNA
genome
Arabidopsis thaliana
3 Citations (Scopus)

SELEX-seq: A method to determine DNA binding specificities of plant transcription factors

Smaczniak, C., Angenent, G. C. & Kaufmann, K., 2017, Plant gene regulatory networks: Methods and protocols. Kaufmann, K. & Mueller-Roeber, B. (eds.). Humana Press Inc., Vol. 1629. p. 67-82 (Methods in Molecular Biology - Springer Protocols; vol. 1629).

Research output: Chapter in Book/Report/Conference proceedingChapter

SELEX Aptamer Technique
Transcription Factors
DNA
High-Throughput Nucleotide Sequencing
Nucleotide Motifs
12 Citations (Scopus)

SIEVE ELEMENT-LINING CHAPERONE1 restricts aphid feeding on arabidopsis during heat stress

Kloth, K. J., Busscher-Lange, J., Wiegers, G. L., Kruijer, W., Buijs, G., Meyer, R. C., Albrectsen, B. R., Bouwmeester, H. J., Dicke, M. & Jongsma, M. A., 1 Oct 2017, In : Plant Cell. 29, 10, p. 2450-2464

Research output: Contribution to journalArticleAcademicpeer-review

Phloem
Aphids
sieve elements
Arabidopsis
phloem
20 Citations (Scopus)

Splicing-related genes are alternatively spliced upon changes in ambient temperatures in plants

Verhage, D. S. L., Severing, E., Bucher, J., Lammers, M., Busscher-Lange, J., Bonnema, A. B., Rodenburg, N., Proveniers, M. C. G., Angenent, G. C. & Immink, G. H., 2017, In : PLoS ONE. 12, 3, e0172950.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Recombinant DNA
alternative splicing
ambient temperature
Genes
Temperature
38 Citations (Scopus)

The BABY BOOM transcription factor activates the LEC1-ABI3-FUS3-LEC2 network to induce somatic embryogenesis

Horstman, A., Li, M., Heidmann, I., Weemen, M., Chen, B., Muino, J. M., Angenent, G. C. & Boutilier, K., Oct 2017, In : Plant Physiology. 175, 2, p. 848-857

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Abscisic Acid
somatic embryogenesis
Embryonic Development
abscisic acid
totipotency

The hot, the cold and the tulip: the regulation of flowering time and dormancy release

Leeggangers, H. A. C. F., 2017, Wageningen: Wageningen University. 244 p.

Research output: Thesisinternal PhD, WU

Open Access
Tulipa
dormancy
flowering
bulbs
transcriptome
12 Citations (Scopus)

The origin of floral organ identity quartets

Ruelens, P., Zhang, Z., van Mourik, H., Maere, S., Kaufmann, K. & Geuten, K., 2017, In : The Plant Cell. 29, 2, p. 229-242

Research output: Contribution to journalArticleAcademicpeer-review

MADS Domain Proteins
Gymnosperms
Angiosperms
Angiospermae
flowers
4 Citations (Scopus)

The physiological and neuroendocrine correlates of hunger in the Red Junglefowl (Gallus gallus)

Lees, J. J., Lindholm, C., Batakis, P., Busscher, M. & Altimiras, J., 1 Dec 2017, In : Scientific Reports. 7, 1, 17984.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gallus gallus
hunger
pro-opiomelanocortin
Agouti
neuropeptide Y

Veredelingsonderzoek naar damping-off in spinazie: Groene Veredeling Spinazie

Magnée, K., Scholten, O. E., Lammerts Van Bueren, E., Groot, S. P. C. & Postma, J., Jun 2017, 2 p. Wageningen : Wageningen University & Research.

Research output: Other contributionPamphlet

Open Access
12 Citations (Scopus)

Visualization of BRI1 and SERK3/BAK1 nanoclusters in Arabidopsis roots

Hutten, S. J., Hamers, D. S., Den Toorn, M. A., Van Esse, W., Nolles, A., Bücherl, C. A., De Vries, S. C., Hohlbein, J. & Borst, J., 2017, In : PLoS ONE. 12, 1, e0169905.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Brassinosteroids
brassinosteroids
Nanoclusters
somatic embryogenesis
Arabidopsis
2016
9 Citations (Scopus)

Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana

Lozano-Sotomayor, P., Chávez Montes, R. A., Silvestre-Vañó, M., Herrera-Ubaldo, H., Greco, R., Pablo-Villa, J., Galliani, B. M., Diaz-Ramirez, D., Weemen, M. & Boutilier, K., 1 Nov 2016, In : The Plant Journal. 88, 3, p. 437-451 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Basic-Leucine Zipper Transcription Factors
Meristem
Growth and Development
Arabidopsis
meristems
28 Citations (Scopus)

AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling

Kloth, K. J., Wiegers, G. L., Busscher-Lange, J., van Haarst, J. C., Kruijer, W. T., Bouwmeester, H. J., Dicke, M. & Jongsma, M. A., 23 Apr 2016, In : Journal of Experimental Botany. 67, 1, p. 3383-3396

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Aphids
Salicylic Acid
jasmonic acid
salicylic acid
Aphidoidea
13 Citations (Scopus)

Barley seed aging: Genetics behind the dry elevated pressure of oxygen aging and moist controlled deterioration

Nagel, M., Kodde, J., Pistrick, S., Mascher, M., Börner, A. & Groot, S. P. C., 2016, In : Frontiers in Plant Science. 7, 388.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
deterioration
barley
oxygen
seeds
quantitative trait loci

Chromatin and epigenetics in all their states: Meeting report of the first conference on Epigenetic and Chromatin Regulation of Plant Traits - January 14 – 15, 2016 - Strasbourg, France

Bey, T., Jamge, S., Klemme, S., Komar, D. N., Le Gall, S., Mikulski, P., Schmidt, M., Zicola, J. & Berr, A., 2016, In : Epigenetics. 11, 8, p. 625-634

Research output: Contribution to journalArticleAcademicpeer-review

Epigenomics
Chromatin
France
Atmosphere
Research
7 Citations (Scopus)

Cross-talk between sporophyte and gametophyte generations is promoted by CHD3 chromatin remodelers in Arabidopsis thaliana

Carter, B., Henderson, J. T., Svedin, E., Fiers, M. A., McCarthy, K., Smith, A., Guo, C., Bishop, B., Zhang, H., Riksen-Bruinsma, T., Shockley, A., Dilkes, B. P., Boutilier, K. A. & Ogas, J., 2016, In : Genetics. 203, 2, p. 817-829

Research output: Contribution to journalArticleAcademicpeer-review

Arabidopsis
Chromatin
Seeds
Diploidy
Ovule
6 Citations (Scopus)

Elucidating and mining the Tulipa and Lilium transcriptomes

Moreno-Pachon, N. M., Leeggangers, M., Nijveen, H., Severing, E., Hilhorst, H. & Immink, R. G. H., 2016, In : Plant Molecular Biology. 92, 3, p. 249-261

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Tulipa
Lilium
Transcriptome
transcriptome
Genome
16 Citations (Scopus)

Evolution of DNA-Binding Sites of a Floral Master Regulatory Transcription Factor

Muiño, J. M., de Bruijn, S. A., Pajoro, A., Geuten, K., Vingron, M., Angenent, G. C. & Kaufmann, K., 2016, In : Molecular Biology and Evolution. 33, 1, p. 185-200

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
binding sites
Transcription Factors
transcription factors
Binding Sites
DNA

Heat stress tolerance responses in developing tomato anthers

Bita, E., 2016, Wageningen: Wageningen University. 109 p.

Research output: Thesisinternal PhD, WU

Open Access
stress tolerance
anthers
heat stress
tomatoes
genotype
15 Citations (Scopus)
Open Access
Solanum chmielewskii
Solanum lycopersicum
introgression
secondary metabolites
tomatoes
2 Citations (Scopus)

Low Temperature Affects Stem Cell Maintenance in Brassica oleracea Seedlings

de Jonge, J., Kodde, J., Severing, E. I., Bonnema, G., Angenent, G. C., Immink, R. G. H. & Groot, S. P. C., 2016, In : Frontiers in Plant Science. 7, 800.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Brassica oleracea
stem cells
blindness
seedlings
temperature
5 Citations (Scopus)

Plasticity versus Adaptation of Ambient-Temperature Flowering Response

Pajoro, A., Verhage, L. & Immink, R. G. H., 2016, In : Trends in Plant Science. 21, 1, p. 6-8

Research output: Contribution to journalArticleAcademicpeer-review

transposons
global warming
Angiospermae
ambient temperature
flowering
12 Citations (Scopus)

Quantitative Genetics Identifies Cryptic Genetic Variation Involved in the Paternal Regulation of Seed Development

Pires, N. D., Bemer, M., Müller, L. M., Baroux, C., Spillane, C. & Grossniklaus, U., 2016, In : Plos Genetics. 12, 1, e1005806.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
quantitative genetics
paternal effect
seed development
genetic variation
Seeds
2 Citations (Scopus)

Secrets of the world's most popular bedding plant unlocked

van der Krol, S. & Immink, R. G. H., 2016, In : Nature Plants. 2, 16085.

Research output: Contribution to journalArticleAcademicpeer-review

bedding plants
Petunia hybrida
genome
Petunia
ancestry

Stress speelt een belangrijke rol : inzicht in koploosheid groeit door gezamenlijk onderzoek

Groot, S. P. C., Kierkels, T. & Heuvelink, E., 2016, In : Onder Glas. 13, 8, p. 30-31

Research output: Contribution to journalArticleProfessional

Open Access
2 Citations (Scopus)

Synthesis and evaluation of locostatin-based chemical probes towards PEBP-proteins

Hoogenboom, J., Fiers, M., Immink, R., Zuilhof, H. & Wennekes, T., 2016, In : Tetrahedron Letters. 57, 22, p. 2406-2409

Research output: Contribution to journalArticleAcademicpeer-review

Ethanolamine
Carrier Proteins
Florigen
Physiological Phenomena
Proteins

Training and research in seed technology. No quality seeds without skilled staff

Groot, S. P. C. & Hilhorst, H. W. M., 31 May 2016, In : Prophyta Annual. 2016, p. 38-39

Research output: Contribution to journalArticlePopular

Open Access
seed quality
seed industry
seeds
Netherlands
farmers
2015
14 Citations (Scopus)

AIL and HDG proteins act antagonistically to control cell proliferation

Horstman, A., Fukuoka, H., Muino Acuna, J. M., Nitsch, L. M. C., Guo, C., Passarinho, P. A., Sanchez Perez, G. F., Immink, R. G. H., Angenent, G. C. & Boutilier, K. A., 2015, In : Development. 142, p. 454-464

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cell Proliferation
Meristem
Proteins
Cell Differentiation
Transcription Factors
5 Citations (Scopus)

A multilevel analysis of fruit growth of two tomato cultivars in response to fruit temperature

Okello, R. C., de Visser, P. H. B., Heuvelink, E., Lammers, M., de Maagd, R. A., Struik, P. C. & Marcelis, L. F. M., 2015, In : Physiologia Plantarum. 153, 3, p. 403-418

Research output: Contribution to journalArticleAcademicpeer-review

Multilevel Analysis
Lycopersicon esculentum
Fruit
tomatoes
Temperature

Applied and fundamental aspects of BABY BOOM-mediated regeneration

Heidmann, I. A., 2015, Wageningen: Wageningen University. 180 p.

Research output: Thesisinternal PhD, WU

Open Access
infants
somatic embryogenesis
sweet peppers
transcription factors
auxins
20 Citations (Scopus)

A Quantitative and Dynamic Model of the Arabidopsis Flowering Time Gene Regulatory Network

Valentim, F. L., van Mourik, S., Posé, D., Kim, M. C., Schmid, M., van Ham, R. C. H. J., Busscher, M., Sanchez Perez, G. F., Molenaar, J., Angenent, G. C., Immink, R. G. H. & van Dijk, A. D. J., 2015, In : PLoS ONE. 10, 2, e0116973.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gene Regulatory Networks
Arabidopsis
dynamic models
Dynamic models
Genes

BABY BOOM-induced somatic embryogenesis in Arabidopsis

Horstman, A., 2015, Wageningen: Wageningen University. 233 p.

Research output: Thesisinternal PhD, WU

Open Access
somatic embryogenesis
Arabidopsis
transcription factors
genes
fluorescence
7 Citations (Scopus)

Bacillus thuringiensis-based Products for Insect Pest Control

de Maagd, R. A., 2015, Principles of Plant-Microbe Interactions : Microbes for Sustainable Agriculture. Lugtenberg, B. (ed.). Springer, p. 185-192 185 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

pest control
Bacillus thuringiensis
insect pests
toxins
crystals
7 Citations (Scopus)

Characterization of in vivo DNA-binding events of plant transcription factors by ChIP-seq: Experimental protocol and computational analysis

Van Mourik, H., Muiño, J. M., Pajoro, A., Angenent, G. C. & Kaufmann, K., 2015, Plant Functional Genomics: Methods and Protocols: Second Edition. Springer New York LLC, p. 93-121

Research output: Chapter in Book/Report/Conference proceedingChapter

Transcription Factors
transcription factors
DNA
Proteins
proteins
6 Citations (Scopus)
Solanum lycopersicum
Lycopersicon esculentum
Lighting
Cell Division
lighting

Groeiend inzicht kan leiden tot versnelling levenscyclus bollen : de bloembol: van black box naar open boek

Immink, G. H., Kierkels, T. & Heuvelink, E., 2015, In : Onder Glas. 12, 2, p. 15-17

Research output: Contribution to journalArticleProfessional

Open Access

Haploid embryogenesis

Boutilier, K., Angenent, G. C., Soriano Castan, M. & Hui, L., 2 Apr 2015, Patent No. WO2015043621, Priority date 24 Sep 2013

Research output: PatentAcademic

Open Access
haploidy
embryogenesis
histones
microspores
embryo (plant)

Health Management for Seeds and Other Organic Propagation Material

Koch, E. & Groot, S. P. C., 2015, Plant Diseaes and Their Management in Organic Agriculture. Finckh, M. R., van Bruggen, A. H. C. & Tamm, L. (eds.). Minnesota: The American Phytopathological Society, p. 189-203

Research output: Chapter in Book/Report/Conference proceedingChapter

propagation materials
seeds
organic production
seed tubers
plant cuttings
Open Access
protein binding
chromatin
flowering
transcription factors
nucleosomes
2 Citations (Scopus)

Pepper, Sweet (Capsicum annuum)

Heidmann, I. & Boutilier, K. A., 2015, Agrobacterium Protocols: Volume 1 (third edition). Wang, K. (ed.). New York, p. 321-334 368 p. (Methods in Molecular Biology; no. 1223).

Research output: Chapter in Book/Report/Conference proceedingChapter

sweet peppers
Capsicum annuum
Agrobacterium
genetically modified organisms
Capsicum
47 Citations (Scopus)

Plant embryogenesis requires AUX/LAX-mediated auxin influx

Robert, H. S., Grunewald, W., Cannoot, B., Soriano, M., Swarup, R., Weijers, D., Bennett, M., Boutilier, K. A. & Friml, J., 2015, In : Development. 142, p. 702-711

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Indoleacetic Acids
Embryonic Development
Embryonic Structures
Brassica napus
Plant Growth Regulators
Open Access
plant reproduction
genes
storage quality
seeds
production technology
5 Citations (Scopus)

Production of interspecific Campanula hybrids by ovule culture: exploring the effecto of ovule isolation time

Röper, A. C., Lütken, H., Christensen, B., Boutilier, K. A., Petersen, K. K. & Müller, R., 2015, In : Euphytica. 203, p. 643-657

Research output: Contribution to journalArticleAcademicpeer-review

Campanulaceae
ovule culture
Campanula
Ovule
ovules
23 Citations (Scopus)

Prolonging the longevity of ex situ conserved seeds by storage under anoxia

Groot, S. P. C., de Groot, L., Kodde, J. & van Treuren, R., 2015, In : Plant genetic resources: characterization and utilization. 13, 1, p. 18-26

Research output: Contribution to journalArticleAcademicpeer-review

hypoxia
Seeds
seeds
seed storage
deterioration
1 Citation (Scopus)

Quality improvement of aged cabbage (Brassica oleracea var. capitata) seeds using chlorophyll fluorescence sensor

Yadav, S. K., Jalink, H., Groot, S. P. C., Van Der Schoor, R., Dadlani, M. & Kodde, J., 25 Jun 2015, In : Scientia Horticulturae. 189, p. 81-85 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

Brassica oleracea var. capitata
cabbage
fluorescence
chlorophyll
seeds
11 Citations (Scopus)

Quantitative Trait Locus Analysis of seed germination and seedling vigour in Brassica rapa reveals QTL hotspots and epistatic interactions

Basnet, R. K., Duwal, A., Tiwari, D. N., Xiao, D., Monakhos, S., Bucher, J., Visser, R. G. F., Groot, S. P. C., Bonnema, A. B. & Maliepaard, C. A., 2015, In : Frontiers in Plant Science. 6, 32 p., 1032.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Brassica rapa
vigor
quantitative trait loci
seed germination
seedlings
7 Citations (Scopus)

Relevance of Bt toxin interaction studies for environmental risk assessment of genetically modified crops

De Schrijver, A., De Clercq, P., de Maagd, R. A. & van Frankenhuyzen, K., 2015, In : Plant Biotechnology Journal. 13, 9, p. 1221-1223

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Bacillus thuringiensis
environmental assessment
toxins
crops
synergism
34 Citations (Scopus)

Role of alternative pre-mRNA splicing in temperature signaling

Capovilla, G., Pajoro, A., Immink, R. G. H. & Schmidt, M., 2015, In : Current Opinion in Plant Biology. 27, p. 97-103

Research output: Contribution to journalArticleAcademicpeer-review

alternative splicing
temperature
thermometers
circadian rhythm
plant development