Research Output 2006 2020

3 Citations (Scopus)

3C in maize and arabidopsis

Weber, B., Jamge, S. & Stam, M., 2018, Plant Chromatin Dynamics: Methods and Protocols. Humana Press Inc., p. 247-270 (Methods in Molecular Biology; vol. 1675).

Research output: Chapter in Book/Report/Conference proceedingChapter

Arabidopsis
Zea mays
Chromosomes
Genome
Research

Aanwezigheid van een gen is nog lang geen garantie : Moleculaire en genetische kennis maakt sprongen

Angenent, G. C., Kierkels, T. & Heuvelink, E., 2014, In : Onder Glas. 11, 9, p. 18-19

Research output: Contribution to journalArticleProfessional

Open Access
47 Citations (Scopus)

Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP i cascade in Arabidopsis axillary buds

Gonzalez-Grandio, E., Pajoro, A., Franco-Zorrilla, J. M., Tarancon, C., Immink, R. G. H. & Cubas, P., 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 2, p. E245-E254

Research output: Contribution to journalArticleAcademicpeer-review

leucine zipper
homeodomain proteins
abscisic acid
Zea
buds

A cautionary note on the use of chromosome conformation capture in plants

Jamge, S., Stam, M., Angenent, G. C. & Immink, R. G. H., 16 Nov 2017, In : Plant Methods. 13, 1, 101.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Chromatin
Chromosomes
chromosomes
chromatin
Suppressor Genes
38 Citations (Scopus)

A cautionary note on the use of split-YFP/BiFC in plant protein-protein interaction studies

Horstman, A., Nougalli Tonaco, I. A., Boutilier, K. A. & Immink, R. G. H., 2014, In : International Journal of Molecular Sciences. 15, p. 9628-9643

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Plant Proteins
proteins
Proteins
interactions
Self assembly
10 Citations (Scopus)

Addendium : Receptor-like proteins: Searching for functions

Guodong Wang, G. & Fiers, M. A., 2010, In : Plant Signaling & Behavior. 5, 5, p. 540-542

Research output: Contribution to journalComment/Letter to the editorAcademic

receptors
proteins
developmental stages
phenotype
mutants
17 Citations (Scopus)

A fast ethanol assay to detect seed deterioration

Kodde, J., Buckley, W. T., de Groot, C. C., Retiere, M., Víquez Zamora, A. M. & Groot, S. P. C., 2012, In : Seed Science Research. 22, p. 55-62

Research output: Contribution to journalArticleAcademicpeer-review

ethanol production
deterioration
ethanol
assays
seeds
14 Citations (Scopus)

AIL and HDG proteins act antagonistically to control cell proliferation

Horstman, A., Fukuoka, H., Muino Acuna, J. M., Nitsch, L. M. C., Guo, C., Passarinho, P. A., Sanchez Perez, G. F., Immink, R. G. H., Angenent, G. C. & Boutilier, K. A., 2015, In : Development. 142, p. 454-464

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cell Proliferation
Meristem
Proteins
Cell Differentiation
Transcription Factors
72 Citations (Scopus)

AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks

Horstman, A., Willemsen, V., Boutilier, K. A. & Heidstra, R., 2014, In : Trends in Plant Science. 19, 3, p. 146-157

Research output: Contribution to journalArticleAcademicpeer-review

transcription factors
somatic embryogenesis
meristems
plant tissues
stem cells
9 Citations (Scopus)

Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana

Lozano-Sotomayor, P., Chávez Montes, R. A., Silvestre-Vañó, M., Herrera-Ubaldo, H., Greco, R., Pablo-Villa, J., Galliani, B. M., Diaz-Ramirez, D., Weemen, M. & Boutilier, K., 1 Nov 2016, In : The Plant Journal. 88, 3, p. 437-451 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Basic-Leucine Zipper Transcription Factors
Meristem
Growth and Development
Arabidopsis
meristems

Alternative Oxidase (AOX) Senses Stress Levels to Coordinate Auxin-Induced Reprogramming From Seed Germination to Somatic Embryogenesis—A Role Relevant for Seed Vigor Prediction and Plant Robustness

Mohanapriya, G., Bharadwaj, R., Noceda, C., Costa, J. H., Kumar, S. R., Sathishkumar, R., Thiers, K. L. L., Santos Macedo, E., Silva, S., Annicchiarico, P., Groot, S. P. C., Kodde, J., Kumari, A., Gupta, K. J. & Arnholdt-Schmitt, B., 20 Sep 2019, In : Frontiers in Plant Science. 10, 1134.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
vigor
auxins
seed germination
somatic embryogenesis
prediction

Ambient temperature‐directed flowering time regulation: the role of alternative splicing

Verhage, D. S. L., 2017, Wageningen: Wageningen University. 161 p.

Research output: Thesisinternal PhD, WU

Open Access
alternative splicing
ambient temperature
flowering
genes
temperature
3 Citations (Scopus)

A molecular network for functional versatility of HECATE transcription factors

Gaillochet, C., Jamge, S., van der Wal, F., Angenent, G., Immink, R. & Lohmann, J. U., 1 Jul 2018, In : Plant Journal. 95, 1, p. 57-70

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
gynoecium
Transcription Factors
transcription factors
Meristem
shoot meristems
5 Citations (Scopus)

A multilevel analysis of fruit growth of two tomato cultivars in response to fruit temperature

Okello, R. C., de Visser, P. H. B., Heuvelink, E., Lammers, M., de Maagd, R. A., Struik, P. C. & Marcelis, L. F. M., 2015, In : Physiologia Plantarum. 153, 3, p. 403-418

Research output: Contribution to journalArticleAcademicpeer-review

Multilevel Analysis
Lycopersicon esculentum
Fruit
tomatoes
Temperature
57 Citations (Scopus)

Analysis of functional redundancies within the Arabidopsis TCP transcription factor family

Danisman, S., van Dijk, A. D. J., Bimbo, A., van der Wal, F., Hennig, L., de Folter, S., Angenent, G. C. & Immink, R. G. H., 2013, In : Journal of Experimental Botany. 64, 18, p. 5673-5685

Research output: Contribution to journalArticleAcademicpeer-review

Arabidopsis
Transcription Factors
transcription factors
Computational Biology
bioinformatics
50 Citations (Scopus)

An Atlas of Type I MADS Box Gene Expression during Female Gametophyte and Seed Development in Arabidopsis[W].

Bemer, M., Heijmans, K., Airoldi, C. A., Davies, B. & Angenent, G. C., 2010, In : Plant Physiology. 154, 1, p. 287-300

Research output: Contribution to journalArticleAcademicpeer-review

Atlases
seed development
Arabidopsis
Seeds
Gene Expression
26 Citations (Scopus)

An efficient flat-surface collar-free grafting method for Arabidopsis thaliana seedlings

Marsch-Martinez, N., Franken, J., Gonzalez-Aguilera, K. L., de Folter, S., Angenent, G. C. & Alvarez-Buylla, E. R., 2013, In : Plant Methods. 9, 14.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Cotyledon
grafting (plants)
collars
Seedlings
Arabidopsis
7 Citations (Scopus)

An O-methyltransferase modifies accumulation of methylated anthocyanins in seedlings of tomato

Gomez Roldan, M. V., Outchkourov, N. S., van Houwelingen, A. M. M. L., Lammers, M., Romero Fuente, I., Ziklo, N., Aharoni, A., Hall, R. D. & Beekwilder, M. J., 2014, In : The Plant Journal. 80, 4, p. 695-708

Research output: Contribution to journalArticleAcademicpeer-review

Anthocyanins
methyltransferases
Methyltransferases
Lycopersicon esculentum
Seedlings
8 Citations (Scopus)

A novel Cry9Aa with increased toxicity for Spodoptera exigua (Hübner)

Naimov, S., Nedyalkova, R., Staykov, N., Weemen-Hendriks, M., Minkov, I. & de Maagd, R. A., 2014, In : Journal of Invertebrate Pathology. 115, p. 99-101

Research output: Contribution to journalArticleAcademicpeer-review

Spodoptera exigua
substitution
toxicity
amino acid
amino acid substitution
3 Citations (Scopus)

A plant-based chemical genomics screen for the identification of flowering inducers

Fiers, M., Hoogenboom, J., Brunazzi, A., Wennekes, T., Angenent, G. C. & Immink, R. G. H., 3 Oct 2017, In : Plant Methods. 13, 9 p., 78.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genomics
Arabidopsis
Salicylic Acid
flowering
genomics

Applied and fundamental aspects of BABY BOOM-mediated regeneration

Heidmann, I. A., 2015, Wageningen: Wageningen University. 180 p.

Research output: Thesisinternal PhD, WU

Open Access
infants
somatic embryogenesis
sweet peppers
transcription factors
auxins
20 Citations (Scopus)

A Quantitative and Dynamic Model of the Arabidopsis Flowering Time Gene Regulatory Network

Valentim, F. L., van Mourik, S., Posé, D., Kim, M. C., Schmid, M., van Ham, R. C. H. J., Busscher, M., Sanchez Perez, G. F., Molenaar, J., Angenent, G. C., Immink, R. G. H. & van Dijk, A. D. J., 2015, In : PLoS ONE. 10, 2, e0116973.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Gene Regulatory Networks
Arabidopsis
dynamic models
Dynamic models
Genes
140 Citations (Scopus)

Arabidopsis Class I and Class II TCP Transcription Factors Regulate Jasmonic Acid Metabolism and Leaf Development Antagonistically.

Danisman, S., van der Wal, F., Dhondt, S., Waites, R., de Folter, S., Bimbo, A., van Dijk, A. D. J., Muino Acuna, J., Cutri, L., Dornelas, M. C., Angenent, G. C. & Immink, R. G. H., 2012, In : Plant Physiology. 159, 4, p. 1511-1523

Research output: Contribution to journalArticleAcademicpeer-review

leaf development
jasmonic acid
Cell Size
Arabidopsis
Transcription Factors
5 Citations (Scopus)

Arabidopsis thaliana ambient temperature responsive lncRNAs

Severing, E., Faino, L., Jamge, S., Busscher, M., Kuijer-Zhang, Y., Bellinazzo, F., Busscher-Lange, J., Fernández, V., Angenent, G. C., Immink, R. G. H. & Pajoro, A., 13 Jul 2018, In : BMC Plant Biology. 18, 1, 145.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
ambient temperature
Arabidopsis thaliana
Arabidopsis
flowering
genome
149 Citations (Scopus)

Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency

Assuncao, A. G. L., Herrero, E., Lin, Y. F., Huettel, B., Talukdar, S., Smaczniak, C. D., Immink, R. G. H., van Eldik, M., Fiers, M., Schat, H. & Aarts, M. G. M., 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, p. 10296-10301

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Arabidopsis thaliana
transcription factors
zinc
leucine zipper
genes

A seed treatment to prevent shoot apical meristem arrest in Brassica oleracea

de Jonge, J., Goffman, F. D., Kodde, J., Angenent, G. C. & Groot, S. P. C., 26 Jan 2018, In : Scientia Horticulturae. 228, p. 76-80

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
shoot meristems
apical meristems
Brassica oleracea
seed treatment
seeds

A transcriptional view on somatic embryogenesis

Horstman, A., Bemer, M. & Boutilier, K. A., 1 Aug 2017, In : Regeneration. 4, 4, p. 201-216

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
somatic embryogenesis
transcription factors
embryo (plant)
chromatin
hormones

A two-component system for seedless fruit development

Bovy, A. G., de Vos, C. H., Schijlen, E. G. W. M. & Angenent, G. C., 31 Jan 2008, Patent No. WO2008013450, Priority date 24 Jul 2006

Research output: PatentOther research output

Open Access
fruiting
eggplants
melons
seed set
pepper
28 Citations (Scopus)

AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling

Kloth, K. J., Wiegers, G. L., Busscher-Lange, J., van Haarst, J. C., Kruijer, W. T., Bouwmeester, H. J., Dicke, M. & Jongsma, M. A., 23 Apr 2016, In : Journal of Experimental Botany. 67, 1, p. 3383-3396

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Aphids
Salicylic Acid
jasmonic acid
salicylic acid
Aphidoidea

BABY BOOM-induced somatic embryogenesis in Arabidopsis

Horstman, A., 2015, Wageningen: Wageningen University. 233 p.

Research output: Thesisinternal PhD, WU

Open Access
somatic embryogenesis
Arabidopsis
transcription factors
genes
fluorescence
7 Citations (Scopus)

Bacillus thuringiensis-based Products for Insect Pest Control

de Maagd, R. A., 2015, Principles of Plant-Microbe Interactions : Microbes for Sustainable Agriculture. Lugtenberg, B. (ed.). Springer, p. 185-192 185 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

pest control
Bacillus thuringiensis
insect pests
toxins
crystals
13 Citations (Scopus)

Barley seed aging: Genetics behind the dry elevated pressure of oxygen aging and moist controlled deterioration

Nagel, M., Kodde, J., Pistrick, S., Mascher, M., Börner, A. & Groot, S. P. C., 2016, In : Frontiers in Plant Science. 7, 388.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
deterioration
barley
oxygen
seeds
quantitative trait loci

Beleg valorisatie bij kennisinstellingen

Angenent, G. C., Hall, R. D., Govers, F. & Leone, G. O. M., 2012, In : Onderzoek Nederland. 298, p. 5-5

Research output: Contribution to journalArticleProfessional

Benzenesulfonamide compounds for somatic embryogenesis in plants

Fiers, M. A. & Boutilier, K. A., 5 Jun 2014, Patent No. WO2014083384, Priority date 28 Nov 2011

Research output: PatentOther research output

Open Access
somatic embryogenesis
pyridines
amines
embryo (plant)
2,4-D

Betere test voor houdbaarheid zaad

Groot, S. P. C., 2011, In : Kennis Online. 2011, 14 juni, p. 9

Research output: Contribution to journalArticleProfessional

Open Access

Biological containment strategies for transgenic crops

de Maagd, R. A. & Boutilier, K. A., 2013, Genetically modified and non-genetically modified food supply chains: Co-existence and traceability. Bertheau, Y. (ed.).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

biocontainment
genetically modified organisms
crops
transgenes
plant development

Can interactions between Bt proteins be predicted and how should effects on non-target organisms of GM crops with multiple Bt Proteins be assessed?

De Schrijver, A., de Clercq, P., Booij, K., de Maagd, R. A. & van Frankenhuyzen, K., 2014, Bilthoven: Cogem. 95 p. (CGM; no. 2014-05)

Research output: Book/ReportReportProfessional

Open Access
nontarget organisms
Bacillus thuringiensis
safety assessment
proteins
genes
4 Citations (Scopus)

Carboxy-terminal extension effects on crystal formation and insecticidal properties of Cry15Aa

Naimov, S., Valkova, R., Dukjandiev, S., Minkov, J. & de Maagd, R. A., 2011, In : Journal of Invertebrate Pathology. 108, 1, p. 56-8

Research output: Contribution to journalArticleAcademicpeer-review

insecticidal properties
crystals
crystal
protein
proteins
51 Citations (Scopus)

Cell plate-restricted association of Arabidopsis dynamin related proteins and PIN auxin efflux carriers is required for PIN endocytic trafficking during cytokinesis.

Mravec, J., Petrasek, J., Li, N., Boeren, J. A., Karlova, R. B., Kitakura, S., Naramoto, S., Nodzynski, T., Dhonukshe, P. B., de Vries, S. C., Zazimalova, E. & Friml, J., 2011, In : Current Biology. 21, 12, p. 1055-1060

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Dynamins
Indoleacetic Acids
Cytokinesis
cytokinesis
Arabidopsis
87 Citations (Scopus)

Central Cell-Derived Peptides Regulate Early Embryo Patterning in Flowering Plants

Costa, L. M., Marshall, E., Tesfaye, M., Silverstein, K. A. T., Mori, M., Umetsu, Y., Otterbach, S. L., Papareddy, R., Dickinson, H. G., Boutilier, K. A., VandenBosch, K. A., Ohki, S. & Gutierrez-Marcos, J. F., 2014, In : Science. 344, 6180, p. 168-172

Research output: Contribution to journalArticleAcademicpeer-review

embryo (plant)
Angiospermae
peptides
endosperm
germ cells
7 Citations (Scopus)

Characterization of in vivo DNA-binding events of plant transcription factors by ChIP-seq: Experimental protocol and computational analysis

Van Mourik, H., Muiño, J. M., Pajoro, A., Angenent, G. C. & Kaufmann, K., 2015, Plant Functional Genomics: Methods and Protocols: Second Edition. Springer New York LLC, p. 93-121

Research output: Chapter in Book/Report/Conference proceedingChapter

Transcription Factors
transcription factors
DNA
Proteins
proteins
253 Citations (Scopus)

Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development

Smaczniak, C., Immink, G. H., Muiño, J. M., Blanvillain, R., Busscher, M., Busscher-Lange, J., Dinh, Q. D., Liu, S., Westphal, A. H., Boeren, S., Parcy, F., Xu, L., Carles, C., Angenent, G. C. & Kaufmann, K., 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 5, p. 1560-1565

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
transcription factors
Arabidopsis
flowering
proteins
in vitro studies
96 Citations (Scopus)

Characterization of SOC1’s Central Role in Flowering by the Identification of Its Upstream and Downstream Regulators1[C][W]

Immink, R. G. H., Posé, D., Ferrario, S. I. T., Ott, F., Kaufmann, K., Valentim, F. L., de Folter, S., van der Wal, F., van Dijk, A. D. J., Schmid, M. & Angenent, G. C., 2012, In : Plant Physiology. 160, 1, p. 433-449

Research output: Contribution to journalArticleAcademicpeer-review

MADS Domain Proteins
Homeodomain Proteins
flowering
Arabidopsis
regulatory sequences
43 Citations (Scopus)

ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions

Muino, J. M., Kaufmann, K., van Ham, R. C. H. J., Angenent, G. C. & Krajewski, P., 2011, In : Plant Methods. 7, 11.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Artifacts
genomics
Polymerase Chain Reaction
Software
Poisson Distribution

Chlorophyll fluorescence and X-ray analyses to characterise and improve paddy rice seed quality

Costa, D. S., Kodde, J. & Groot, S. P. C., 2014, In : Seed Science and Technology. 42, 3, p. 449-453

Research output: Contribution to journalArticleAcademicpeer-review

seed quality
X-radiation
fluorescence
chlorophyll
rice

Chromatin and epigenetics in all their states: Meeting report of the first conference on Epigenetic and Chromatin Regulation of Plant Traits - January 14 – 15, 2016 - Strasbourg, France

Bey, T., Jamge, S., Klemme, S., Komar, D. N., Le Gall, S., Mikulski, P., Schmidt, M., Zicola, J. & Berr, A., 2016, In : Epigenetics. 11, 8, p. 625-634

Research output: Contribution to journalArticleAcademicpeer-review

Epigenomics
Chromatin
France
Atmosphere
Research
5 Citations (Scopus)

Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana

Aerts, N., de Bruijn, S., van Mourik, H., Angenent, G. C. & van Dijk, A. D. J., 25 Jun 2018, In : BMC Plant Biology. 18, 1, 131.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Arabidopsis thaliana
transcription factors
DNA-binding domains
protein binding
ecotypes
4 Citations (Scopus)

Comprehensive phenotyping reveals interactions and functions of Arabidopsis thaliana TCP genes in yield determination

van Es, S. W., van der Auweraert, E., Rodrigues da Silveira, S., Angenent, G. C., van Dijk, A. D. J. & Immink, G. H., 22 Mar 2019, In : The Plant Journal.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Arabidopsis
seed yield
Arabidopsis thaliana
vegetative growth
phenotype
39 Citations (Scopus)

Constitutive Activation of the Midgut Response to Bacillus thuringiensis in Bt-Resistant Spodoptera exigua

Hernandez-Martinez, P., Navarro-Cerrillo, G., Caccia, S., de Maagd, R. A., Moar, W. J., Ferre, J., Escriche, B. & Herrero, S., 2010, In : PLoS ONE. 5, 9, e12795.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Spodoptera
Bacillus thuringiensis
Spodoptera exigua
Bacilli
midgut
15 Citations (Scopus)

Continuous-time modeling of cell fate determination in Arabidopsis flowers

van Mourik, S., van Dijk, A. D. J., de Gee, M., Immink, R. G. H., Kaufmann, K., Angenent, G. C., van Ham, R. C. H. J. & Molenaar, J., 2010, In : BMC Systems Biology. 4, 13 p., 101.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Arabidopsis
Continuous Time
Mutation
Gene Regulatory Networks
Cell