Research Output

2020

A DMP-triggered in vivo maternal haploid induction system in the dicotyledonous Arabidopsis

Zhong, Y., Chen, B., Li, M., Wang, D., Jiao, Y., Qi, X., Wang, M., Liu, Z., Chen, C., Wang, Y., Chen, M., Li, J., Xiao, Z., Cheng, D., Liu, W., Boutilier, K. A., Liu, C. & Chen, S., 1 May 2020, In : Nature Plants. 6, p. 466-472

Research output: Contribution to journalLetterAcademicpeer-review

CRISPR/Cas inactivation of RECQ4 increases homeologous crossovers in an interspecific tomato hybrid

de Maagd, R. A., Loonen, A., Chouaref, J., Pelé, A., Meijer-Dekens, F., Fransz, P. & Bai, Y., Mar 2020, In : Plant Biotechnology Journal. 18, 3, p. 805-813

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Editorial Seed Science and Technology Volume 48 Issue 1 (2020)

Groot, S. P. C., 1 Apr 2020, In : Seed Science and Technology. 48, 1, p. 133-142

Research output: Contribution to journalEditorialAcademic

Open Access

Genetic and epigenetic regulation of tomato fruit ripening

Wang, R., 2020, Wageningen: Wageningen University. 175 p.

Research output: Thesisinternal PhD, WU

Revisiting the Role of Master Regulators in Tomato Ripening

Wang, R., Angenent, G. C., Seymour, G. & de Maagd, R. A., Mar 2020, In : Trends in Plant Science. 25, 3, p. 291-301

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)
Open Access

Symplasmic isolation marks cell fate changes during somatic embryogenesis

Godel-Jedrychowska, K., Kulinska-Lukaszek, K., Horstman, A., Soriano Castan, M., Li, M., Malota, K., Boutilier, K. A. & Kurczynska, E. U., 9 May 2020, In : Journal of Experimental Botany. 71, 9, p. 2612-2628

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access
2019

Alternative Oxidase (AOX) Senses Stress Levels to Coordinate Auxin-Induced Reprogramming From Seed Germination to Somatic Embryogenesis—A Role Relevant for Seed Vigor Prediction and Plant Robustness

Mohanapriya, G., Bharadwaj, R., Noceda, C., Costa, J. H., Kumar, S. R., Sathishkumar, R., Thiers, K. L. L., Santos Macedo, E., Silva, S., Annicchiarico, P., Groot, S. P. C., Kodde, J., Kumari, A., Gupta, K. J. & Arnholdt-Schmitt, B., 20 Sep 2019, In : Frontiers in Plant Science. 10, 1134.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Comprehensive phenotyping reveals interactions and functions of Arabidopsis thaliana TCP genes in yield determination

van Es, S. W., van der Auweraert, E., Rodrigues da Silveira, S., Angenent, G. C., van Dijk, A. D. J. & Immink, G. H., 22 Mar 2019, In : The Plant Journal.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Improved inference of intermolecular contacts through protein–protein interaction prediction using coevolutionary analysis

Correa Marrero, M., Immink, G. H., de Ridder, D. & van Dijk, A. D. J., Jun 2019, In : Bioinformatics. 35, 12, p. 2036-2042 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Long-read annotation: Automated eukaryotic genome annotation based on long-read cDNA sequencing

Cook, D. E., Valle-Inclan, J. E., Pajoro, A., Rovenich, H., Thomma, B. P. H. J. & Faino, L., 1 Jan 2019, In : Plant Physiology. 179, 1, p. 38-54 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
11 Citations (Scopus)

Morphological and Molecular Characterization of Orchid Fruit Development

Dirks-Mulder, A., Ahmed, I., uit het Broek, M., Krol, L., Menger, N., Snier, J., van Winzum, A., de Wolf, A., van 't Wout, M., Zeegers, J. J., Butôt, R., Heijungs, R., Van Heuven, B. J., Kruizinga, J., Langelaan, R., Smets, E. F., Star, W., Bemer, M. & Gravendeel, B., 19 Feb 2019, In : Frontiers in Plant Science. 10, 18 p., 137.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Re-evaluation of transcription factor function in tomato fruit development and ripening with CRISPR/Cas9-mutagenesis

Wang, R., da Rocha Tavano, E. C., Lammers, M., Martinelli, A. P., Angenent, G. C. & de Maagd, R. A., 8 Feb 2019, In : Scientific Reports. 9, 1, 1696.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
12 Citations (Scopus)

Satellite data integration for soil clay content modelling at a national scale

Loiseau, T., Chen, S., Mulder, V. L., Román Dobarco, M., Richer-de-forges, A. C., Lehmann, S., Bourennane, H., Saby, N. P. A., Martin, M. P., Vaudour, E., Gomez, C., Lagacherie, P. & Arrouays, D., 1 Oct 2019, In : International Journal of applied Earth Observation and Geoinformation. 82, 101905.

Research output: Contribution to journalArticleAcademicpeer-review

Seed maturation and post-harvest ripening negatively affect arabidopsis somatic embryogenesis

Wu, H., Chen, B., Fiers, M., Wróbel-Marek, J., Kodde, J., Groot, S. P. C., Angenent, G., Feng, H., Bentsink, L. & Boutilier, K., Oct 2019, In : Plant Cell, Tissue and Organ Culture. 139, 1, p. 17-27

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

The SAUR gene family: the plant’s toolbox for adaptation of growth and development

Stortenbeker, N. & Bemer, M., 1 Jan 2019, In : Journal of Experimental Botany. 70, 1, p. 17-27

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)
2018

3C in maize and arabidopsis

Weber, B., Jamge, S. & Stam, M., 2018, Plant Chromatin Dynamics: Methods and Protocols. Humana Press Inc., p. 247-270 (Methods in Molecular Biology; vol. 1675).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

A molecular network for functional versatility of HECATE transcription factors

Gaillochet, C., Jamge, S., van der Wal, F., Angenent, G., Immink, R. & Lohmann, J. U., 1 Jul 2018, In : Plant Journal. 95, 1, p. 57-70

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Arabidopsis thaliana ambient temperature responsive lncRNAs

Severing, E., Faino, L., Jamge, S., Busscher, M., Kuijer-Zhang, Y., Bellinazzo, F., Busscher-Lange, J., Fernández, V., Angenent, G. C., Immink, R. G. H. & Pajoro, A., 13 Jul 2018, In : BMC Plant Biology. 18, 1, 145.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

A seed treatment to prevent shoot apical meristem arrest in Brassica oleracea

de Jonge, J., Goffman, F. D., Kodde, J., Angenent, G. C. & Groot, S. P. C., 26 Jan 2018, In : Scientia Horticulturae. 228, p. 76-80

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Comparative analysis of binding patterns of MADS-domain proteins in Arabidopsis thaliana

Aerts, N., de Bruijn, S., van Mourik, H., Angenent, G. C. & van Dijk, A. D. J., 25 Jun 2018, In : BMC Plant Biology. 18, 1, 131.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Desiccation sensitive seeds: understanding their evolution, genetics and physiology

Correia Silva de Santana Marques, A., 2018, Wageningen: Wageningen University. 189 p.

Research output: Thesisinternal PhD, WU

Open Access
3 Citations (Scopus)

Engineering storage capacity for volatile sesquiterpenes in Nicotiana benthamiana leaves

Delatte, T. L., Scaiola, G., Molenaar, J., de Sousa Farias, K., Alves Gomes Albertti, L., Busscher, J., Verstappen, F., Carollo, C., Bouwmeester, H. & Beekwilder, J., Dec 2018, In : Plant Biotechnology Journal. 16, 12, p. 1997-2006

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Environmental tuning of the genetic control of seed performance: a systems genetics approach

Serin, E. A. R., 2018, Wageningen: Wageningen University. 214 p.

Research output: Thesisinternal PhD, WU

Open Access

Genetic control of meristem arrest and life span in Arabidopsis by a FRUITFULL-APETALA2 pathway

Balanzà, V., Martínez-Fernández, I., Sato, S., Yanofsky, M. F., Kaufmann, K., Angenent, G. C., Bemer, M. & Ferrándiz, C., 8 Feb 2018, In : Nature Communications. 9, 1, 565.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
25 Citations (Scopus)

Identification and functional analyses of genes regulating seed dormancy, longevity and germination

Yazdanpanah, F., 2018, Wageningen: Wageningen University. 150 p.

Research output: Thesisinternal PhD, WU

Identification of in planta protein–protein interactions using IP-MS

Jamge, S., Angenent, G. & Bemer, M., 2018, Plant Chromatin Dynamics: Methods and Protocols. Humana Press Inc., p. 315-329 (Methods in Molecular Biology; vol. 1675).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)
Open Access

Microbiome-related metabolite changes in gut tissue, cecum content and feces of rats treated with antibiotics

Behr, C., Sperber, S., Jiang, X., Strauss, V., Kamp, H., Walk, T., Herold, M., Beekmann, K., Rietjens, I. M. C. M. & van Ravenzwaay, B., 15 Sep 2018, In : Toxicology and Applied Pharmacology. 355, p. 198-210

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Novel functions of the Arabidopsis transcription factor TCP5 in petal development and ethylene biosynthesis

van Es, S. W., Silveira, S. R., Rocha, D. I., Bimbo, A., Martinelli, A. P., Dornelas, M. C., Angenent, G. C. & Immink, G. H., Jun 2018, In : The Plant Journal. 94, 5, p. 867-879

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)

Organic seed production, certification and availability: Corp Breeding and cultivation:

Groot, S. P. C. & Raaijmakers, M. H. J. E., 2018, Improving organic crop cultivation. Köpke, U. (ed.). Cambridge, UK: Burleigh Dodds Science Publishing Limited

Research output: Chapter in Book/Report/Conference proceedingChapter

PISTILLATA paralogs in Tarenaya hassleriana have diverged in interaction specificity

de Bruijn, S., Zhao, T., Muiño, J. M., Schranz, E. M., Angenent, G. C. & Kaufmann, K., 22 Dec 2018, In : BMC Plant Biology. 18, 1, 368.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Profiling nucleosome occupancy by MNase-seq: Experimental protocol and computational analysis

Pajoro, A., Muiño, J. M., Angenent, G. C. & Kaufmann, K., 2018, Plant Chromatin Dynamics: Methods and Protocols. Humana Press Inc., p. 167-181 (Methods in Molecular Biology; vol. 1675).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Citations (Scopus)

Rapid loss of seed viability in ex situ conserved wheat and barley at 4°C as compared to −20°C storage

van Treuren, R., Bas, N., Kodde, J., Groot, S. P. C. & Kik, C., 25 Jun 2018, In : Conservation Physiology. 6, 1, coy033.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Role of Tulipa gesneriana TEOSINTE BRANCHED1 (TgTB1) in the control of axillary bud outgrowth in bulbs

Moreno-Pachon, N. M., Mutimawurugo, M. C., Heynen, E., Sergeeva, L., Benders, A., Blilou, I., Hilhorst, H. W. M. & Immink, R. G. H., Jun 2018, In : Plant Reproduction. 31, 2, p. 145-157

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Sculpting a plant: TCP transcription factors as key regulators of plant growth and development

Es, S. W., 2018, Wageningen: Wageningen University. 173 p.

Research output: Thesisinternal PhD, WU

Seed dormancy release accelerated by elevated partial pressure of oxygen is associated with DOG loci

Buijs, G., Kodde, J., Groot, S. P. C. & Bentsink, L., 27 Jun 2018, In : Journal of Experimental Botany. 69, 15, p. 3601-3608

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Unraveling the complex epigenetic mechanisms that regulate gene activity

Bemer, M., 2018, Plant Chromatin Dynamics. Humana Press Inc., p. 205-231 (Methods in Molecular Biology; vol. 1675).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Citations (Scopus)

Vitale Teelt 2030: Visie van de bloembollensector

Looman, B. H. M., Poot, E. H. & Immink, G. H., 2018, KAVB. 19 p.

Research output: Book/ReportReportProfessional

Open Access
2017

Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP i cascade in Arabidopsis axillary buds

Gonzalez-Grandio, E., Pajoro, A., Franco-Zorrilla, J. M., Tarancon, C., Immink, R. G. H. & Cubas, P., 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 2, p. E245-E254

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
56 Citations (Scopus)

A cautionary note on the use of chromosome conformation capture in plants

Jamge, S., Stam, M., Angenent, G. C. & Immink, R. G. H., 16 Nov 2017, In : Plant Methods. 13, 1, 101.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Ambient temperature‐directed flowering time regulation: the role of alternative splicing

Verhage, D. S. L., 2017, Wageningen: Wageningen University. 161 p.

Research output: Thesisinternal PhD, WU

Open Access

A plant-based chemical genomics screen for the identification of flowering inducers

Fiers, M., Hoogenboom, J., Brunazzi, A., Wennekes, T., Angenent, G. C. & Immink, R. G. H., 3 Oct 2017, In : Plant Methods. 13, 9 p., 78.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

A transcriptional view on somatic embryogenesis

Horstman, A., Bemer, M. & Boutilier, K. A., 1 Aug 2017, In : Regeneration. 4, 4, p. 201-216

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Cross-Family Transcription Factor Interactions: An Additional Layer of Gene Regulation

Bemer, M., van Dijk, A-J., Immink, R. G. H. & Angenent, G. C., 2017, In : Trends in Plant Science. 22, 1, p. 66-80

Research output: Contribution to journalArticleAcademicpeer-review

34 Citations (Scopus)

Differences in DNA binding specificity of floral homeotic protein complexes predict organ-specific target genes

Smaczniak, C., Muiño, J. M., Chen, D., Angenent, G. C. & Kaufmann, K., 2017, In : The Plant Cell. 29, 8, p. 1822-1835

Research output: Contribution to journalArticleAcademicpeer-review

16 Citations (Scopus)

Divergent regulation of Arabidopsis SAUR genes: A focus on the SAUR10-clade

van Mourik, H., van Dijk, A. D. J., Stortenbeker, N., Angenent, G. C. & Bemer, M., 19 Dec 2017, In : BMC Plant Biology. 17, 245.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
11 Citations (Scopus)

Don't waste your efforts

Groot, S. P. C., 8 Oct 2017, In : Prophyta - Focus on Europe. p. 32-34

Research output: Contribution to journalArticleProfessional

Open Access