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2020

Advances in our understanding of the structure and functionality of edible fats and fat mimetics

Marangoni, A. G., Van Duynhoven, J. P. M., Acevedo, N. C., Nicholson, R. A. & Patel, A. R., 1 Jan 2020, In : Soft Matter. 16, 2, p. 289-306 18 p.

Research output: Contribution to journalArticleAcademicpeer-review

Design principles of a minimal auxin response system

Kato, H., Mutte, S. K., Suzuki, H., Crespo, I., Das, S., Radoeva, T., Fontana, M., Yoshitake, Y., Hainiwa, E., van den Berg, W., Lindhoud, S., Ishizaki, K., Hohlbein, J., Borst, J. W., Boer, R., Nishihama, R., Kohchi, T. & Weijers, D., 1 May 2020, In : Nature Plants. 6, 5, p. 473-482 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Direct Visualization of Native CRISPR Target Search in Live Bacteria Reveals Cascade DNA Surveillance Mechanism

Vink, J. N. A., Martens, K. J. A., Vlot, M., McKenzie, R. E., Almendros, C., Estrada Bonilla, B., Brocken, D. J. W., Hohlbein, J. & Brouns, S. J. J., 2 Jan 2020, In : Molecular Cell. 77, 1, p. 39-50.e10

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)
Open Access
1 Citation (Scopus)

High Field MicroMRI Velocimetric Measurement of Quantitative Local Flow Curves

Nikolaeva, T., Vergeldt, F. J., Serial, R., Dijksman, J. A., Venema, P., Voda, A., Van Duynhoven, J. & Van As, H., 13 Feb 2020, In : Analytical Chemistry. 92, 6, p. 4193-4200

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Impact of water degumming and enzymatic degumming on gum mesostructure formation in crude soybean oil

Nikolaeva, T., Rietkerk, T., Sein, A., Dalgliesh, R., Bouwman, W. G., Velichko, E., Tian, B., Van As, H. & van Duynhoven, J., 1 May 2020, In : Food Chemistry. 311, 126017.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)
Open Access
2 Citations (Scopus)

Magnetic Resonance Microscopy at Cellular Resolution and Localised Spectroscopy of Medicago truncatula at 22.3 Tesla

van Schadewijk, R., Krug, J. R., Shen, D., Sankar Gupta, K. B. S., Vergeldt, F. J., Bisseling, A. H. J., Webb, A. G., Van As, H., Velders, A. H., de Groot, H. J. M. & Alia, A., 22 Jan 2020, In : Scientific Reports. 10, 1, 971.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Morphological and physiological responses of the potato stem transport tissues to dehydration stress

Aliche, E. B., Prusova-Bourke, A., Ruiz-Sanchez, M., Oortwijn, M., Gerkema, E., Van As, H., Visser, R. G. F. & van der Linden, C. G., 8 Jan 2020, In : Planta. 251, 2, 45.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Photosystem II core quenching in desiccated Leptolyngbya ohadii

Ranjbar Choubeh, R., Bar-Eyal, L., Paltiel, Y., Keren, N., Struik, P. C. & van Amerongen, H., Jan 2020, In : Photosynthesis Research. 143, 1, p. 13-18

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

The relevance of dynamic thylakoid organisation to photosynthetic regulation

Johnson, M. P. & Wientjes, E., 1 Apr 2020, In : Biochimica et Biophysica Acta - Bioenergetics. 1861, 4, 148039.

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)
2019

31P NMR assessment of the phosvitin-iron complex in mayonnaise

Merkx, D. W. H., Delić, F., Wierenga, P. A., Hennebelle, M. & van Duynhoven, J. P. M., Sep 2019, In : Magnetic Resonance in Chemistry. 57, 9, p. 540-547 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

3D biofilm visualization and quantification on granular bioanodes with magnetic resonance imaging

Caizán-Juanarena, L., Krug, J. R., Vergeldt, F. J., Kleijn, J. M., Velders, A. H., van As, H. & ter Heijne, A., 15 Dec 2019, In : Water Research. 167, 115059.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Anhydrobiosis: Inside yeast cells

Rapoport, A., Golovina, E. A., Gervais, P., Dupont, S. & Beney, L., 2019, In : Biotechnology Advances. 37, 1, p. 51-67

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

A versatile shear cell for investigation of structure of food materials under shear

Velichko, E., Tian, B., Nikolaeva, T., Koning, J., van Duynhoven, J. & Bouwman, W. G., 5 Apr 2019, In : Colloids and Surfaces A: Physicochemical and Engineering Aspects. 566, p. 21-28

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)
Open Access
1 Citation (Scopus)

Efficiency of excitation energy trapping in the green photosynthetic bacterium Chlorobaculum tepidum

Ranjbar Choubeh, R., Koehorst, R. B. M., Bína, D., Struik, P. C., Pšenčík, J. & van Amerongen, H., 1 Feb 2019, In : Biochimica et Biophysica Acta - Bioenergetics. 1860, 2, p. 147-154

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Electrochemically Gated Long-Distance Charge Transport in Photosystem I

López-Martínez, M., López-Ortiz, M., Antinori, M. E., Wientjes, E., Nin-Hill, A., Rovira, C., Croce, R., Díez-Pérez, I. & Gorostiza, P., 16 Sep 2019, In : Angewandte Chemie - International Edition. 58, 38, p. 13280-13284

Research output: Contribution to journalArticleAcademicpeer-review

Enabling High Spectral Resolution of Liquid Mixtures in Porous Media by Antidiagonal Projections of Two-Dimensional 1H NMR COSY Spectra

Terenzi, C., Sederman, A. J., Mantle, M. D. & Gladden, L. F., 11 Sep 2019, In : Journal of Physical Chemistry Letters. 10, 19, p. 5781-5785

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Evaluating single-particle tracking by photo-activation localization microscopy (sptPALM) in Lactococcus lactis

van Beljouw, S. P. B., van der Els, S., Martens, K. J. A., Kleerebezem, M., Bron, P. A. & Hohlbein, J., 8 Mar 2019, In : Physical Biology. 16, 3, 1 p.

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Full 1H and 13C NMR spectral assignment of conjugated valerolactone metabolites isolated from urine of black tea consumers by means of SPE-prepLC–MS–LC–MS-NMR

de Roo, N., Wilmsen, S. M. J., Mihaleva, V. V., Jacobs, D. M. & van Duynhoven, J. P. M., Sep 2019, In : Magnetic Resonance in Chemistry. 57, 9, p. 548-557 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

High-throughput, non-equilibrium studies of single biomolecules using glass-made nanofluidic devices

Fontana, M., Fijen, C., Lemay, S. G., Mathwig, K. & Hohlbein, J., 7 Jan 2019, In : Lab on a Chip. 19, 1, p. 79-86

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Ionic interaction and liquid absorption by wood in lignocellulose inorganic mineral binder composites

Doudart de la Grée, G. C. H., Caprai, V., van Dam, J. E. G., van As, H., Brouwers, H. J. H. & Yu, Q. L., 1 Jan 2019, In : Journal of Cleaner Production. 206, p. 808-818

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Light acclimation of the colonial green alga botryococcus braunii strain showa

van den Berg, T. E., Chukhutsina, V. U., van Amerongen, H., Croce, R. & van Oort, B., Mar 2019, In : Plant Physiology. 179, 3, p. 1132-1143

Research output: Contribution to journalArticleAcademicpeer-review

Manipulation of Recrystallization and Network Formation of Oil-Dispersed Micronized Fat Crystals

Nikolaeva, T., den Adel, R., van der Sman, R., Martens, K. J. A., Van As, H., Voda, A. & van Duynhoven, J., 12 Feb 2019, In : Langmuir. 35, 6, p. 2221-2229

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Quantifying Localized Macromolecular Dynamics within Hydrated Cellulose Fibril Aggregates

Chen, P., Terenzi, C., Furó, I., Berglund, L. A. & Wohlert, J., 19 Sep 2019, In : Macromolecules. 52, 19, p. 7278-7288

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Selective oil-phase rheo-MRI velocity profiles to monitor heterogeneous flow behavior of oil/water food emulsions

Serial, M. R., Nikolaeva, T., Vergeldt, F. J., van Duynhoven, J. & van As, H., Sep 2019, In : Magnetic Resonance in Chemistry. 57, 9, p. 766-770 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Substrate conformational dynamics facilitate structure-specific recognition of gapped DNA by DNA polymerase

Craggs, T. D., Sustarsic, M., Plochowietz, A., Mosayebi, M., Kaju, H., Cuthbert, A., Hohlbein, J., Domicevica, L., Biggin, P. C., Doye, J. P. K. & Kapanidis, A. N., 18 Nov 2019, In : Nucleic acids research. 47, 20, p. 10788-10800 13 p., gkz797.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Two Quenchers Formed During Photodamage of Phostosystem II and The Role of One Quencher in Preemptive Photoprotection

Zavafer, A., Iermak, I., Cheah, M. H. & Chow, W. S., 21 Nov 2019, In : Scientific Reports. 9, 17275.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Visualisation of dCas9 target search in vivo using an open-microscopy framework

Martens, K. J. A., van Beljouw, S. P. B., van der Els, S., Vink, J. N. A., Baas, S., Vogelaar, G. A., Brouns, S. J. J., van Baarlen, P., Kleerebezem, M. & Hohlbein, J., 7 Aug 2019, In : Nature Communications. 10, 1, 3552.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)
2018

A functional compartmental model of the Synechocystis PCC 6803 phycobilisome

van Stokkum, I. H. M., Gwizdala, M., Tian, T., Snellenburg, J. J., van Grondelle, R., van Amerongen, H. & Berera, R., Mar 2018, In : Photosynthesis Research. 135, 1-3, p. 87-102

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
14 Citations (Scopus)

A possible molecular basis for photoprotection in the minor antenna proteins of plants

Fox, K. F., Ünlü, C., Balevičius, V., Ramdour, B. N., Kern, C., Pan, X., Li, M., van Amerongen, H. & Duffy, C. D. P., 1 Jul 2018, In : Biochimica et Biophysica Acta - Bioenergetics. 1859, 7, p. 471-481

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

Dynamic changes between two LHCX-related energy quenching sites control diatom photoacclimation

Taddei, L., Chukhutsina, V. U., Lepetit, B., Stella, G. R., Bassi, R., van Amerongen, H., Bouly, J. P., Jaubert, M., Finazzi, G. & Falciatore, A., Jul 2018, In : Plant Physiology. 177, 3, p. 953-965

Research output: Contribution to journalArticleAcademicpeer-review

15 Citations (Scopus)

Dynamic feedback of the photosystem II reaction centre on photoprotection in plants

Farooq, S., Chmeliov, J., Wientjes, E., Koehorst, R., Bader, A., Valkunas, L., Trinkunas, G. & van Amerongen, H., May 2018, In : Nature Plants. 4, p. 225-231

Research output: Contribution to journalArticleAcademicpeer-review

17 Citations (Scopus)

Fat Crystallite Thickness Distribution Based on SAXD Peak Shape Analysis

den Adel, R., van Malssen, K., van Duynhoven, J., Mykhaylyk, O. O. & Voda, A., Sep 2018, In : European Journal of Lipid Science and Technology. 120, 9, 1800222.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Global testing of shifts in metabolic phenotype

Fazelzadeh, P., Hoefsloot, H. C. J., Hankemeier, T., Most, J., Kersten, S., Blaak, E. E., Boekschoten, M. & van Duynhoven, J., 4 Oct 2018, In : Metabolomics. 14, 10, 139.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Heterogeneity of Network Structures and Water Dynamics in κ‑Carrageenan Gels Probed by Nanoparticle Diffusometry

de Kort, D. W., Schuster, E., Hoeben, F. J. M., Barnes, R., Emondts, M., Janssen, H. M., Lorén, N., Han, S., Van As, H. & van Duynhoven, J. P. M., 22 Aug 2018, In : Langmuir. 34, p. 11110-11120

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Modulating D-amino acid oxidase (DAAO) substrate specificity through facilitated solvent access

Subramanian, K., Góra, A., Spruijt, R., Mitusińska, K., Suarez-Diez, M., Martins Dos Santos, V. & Schaap, P. J., 1 Jan 2018, In : PLoS ONE. 13, 6, e0198990.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
10 Citations (Scopus)

Networks of micronized fat crystals grown under static conditions

Nikolaeva, T., den Adel, R., Velichko, E., Bouwman, W. G., Hermida-Merino, D., Van As, H., Voda, A. & Van Duynhoven, J., 25 Apr 2018, In : Food & Function. 9, 4, p. 2102-2111

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)
Open Access
10 Citations (Scopus)

Picosecond excitation energy transfer of allophycocyanin studied in solution and in crystals

Ranjbar Choubeh, R., Sonani, R. R., Madamwar, D., Struik, P. C., Bader, A. N., Robert, B. & van Amerongen, H., Mar 2018, In : Photosynthesis Research. 135, 1-3, p. 79-86

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study

Hellenkamp, B., Schmid, S., Doroshenko, O., Opanasyuk, O., Kühnemuth, R., Rezaei Adariani, S., Ambrose, B., Aznauryan, M., Barth, A., Birkedal, V., Bowen, M. E., Chen, H., Cordes, T., Eilert, T., Fijen, C., Gebhardt, C., Götz, M., Gouridis, G., Gratton, E., Ha, T. & 43 others, Hao, P., Hanke, C. A., Hartmann, A., Hendrix, J., Hildebrandt, L. L., Hirschfeld, V., Hohlbein, J., Hua, B., Hübner, C. G., Kallis, E., Kapanidis, A. N., Kim, J. Y., Krainer, G., Lamb, D. C., Lee, N. K., Lemke, E. A., Levesque, B., Levitus, M., McCann, J. J., Naredi-Rainer, N., Nettels, D., Ngo, T., Qiu, R., Robb, N. C., Röcker, C., Sanabria, H., Schlierf, M., Schröder, T., Schuler, B., Seidel, H., Streit, L., Thurn, J., Tinnefeld, P., Tyagi, S., Vandenberk, N., Vera, A. M., Weninger, K. R., Wünsch, B., Yanez-Orozco, I. S., Michaelis, J., Seidel, C. A. M., Craggs, T. D. & Hugel, T., 31 Aug 2018, In : Nature Methods. 15, 9, p. 669-676

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
59 Citations (Scopus)

Quantification of food polysaccharide mixtures by ¹H NMR

Merkx, D. W. H., Westphal, Y., van Velzen, E. J. J., Thakoer, K. V., de Roo, N. & van Duynhoven, J. P. M., 1 Jan 2018, In : Carbohydrate Polymers. 179, p. 379-385

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)

Quantitative Structural Analysis of Fat Crystal Networks by Means of Raman Confocal Imaging

Martens, K. J. A., van Dalen, G., Heussen, P. C. M., Voda, M. A., Nikolaeva, T. & van Duynhoven, J. P. M., Mar 2018, In : JAOCS, Journal of the American Oil Chemists' Society. 95, 3, p. 259-265

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Rapid and noninvasive quality control of anhydrous milk fat by PTR-MS: The effect of storage time and packaging

Pedrotti, M., Khomenko, I., Cappellin, L., Fontana, M., Somenzi, M., Falchero, L., Arveda, M., Fogliano, V. & Biasioli, F., 1 Jan 2018, In : Journal of Mass Spectrometry. 53, 9, p. 753-762

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

Rapid Quantitative Profiling of Lipid Oxidation Products in a Food Emulsion by 1H NMR

Merkx, D. W. H., Hong, G. T. S., Ermacora, A. & Van Duynhoven, J. P. M., 5 Mar 2018, In : Analytical Chemistry. 90, 7, p. 4863-4870

Research output: Contribution to journalArticleAcademicpeer-review

11 Citations (Scopus)

State transitions in the cyanobacterium Synechococcus elongatus 7942 involve reversible quenching of the photosystem II core

Ranjbar Choubeh, R., Wientjes, E., Struik, P. C., Kirilovsky, D. & van Amerongen, H., 1 Oct 2018, In : Biochimica et Biophysica Acta - Bioenergetics. 1859, 10, p. 1059-1066

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)

Weight loss moderately affects the mixed meal challenge response of the plasma metabolome and transcriptome of peripheral blood mononuclear cells in abdominally obese subjects

Fazelzadeh, P., Hangelbroek, R. W. J., Joris, P. J., Schalkwijk, C. G., Esser, D., Afman, L., Hankemeier, T., Jacobs, D. M., Mihaleva, V. V., Kersten, S., van Duynhoven, J. & Boekschoten, M. V., 1 Apr 2018, In : Metabolomics. 14, 4, 46.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)
2017

A Nanofluidic Mixing Device for High-throughput Fluorescence Sensing of Single Molecules

Mathwig, K., Fijen, C., Fontana, M., Lemay, S. G. & Hohlbein, J. C., 2017, In : Procedia Technology. 27, p. 141-142 2 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access