Research Output 1976 2020

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2020

Advances in our understanding of the structure and functionality of edible fats and fat mimetics

Marangoni, A. G., Van Duynhoven, J. P. M., Acevedo, N. C., Nicholson, R. A. & Patel, A. R., 1 Jan 2020, In : Soft Matter. 16, 2, p. 289-306 18 p.

Research output: Contribution to journalArticleAcademicpeer-review

fats
Oils and fats
Fats
Emulsions
food

Direct Visualization of Native CRISPR Target Search in Live Bacteria Reveals Cascade DNA Surveillance Mechanism

Vink, J. N. A., Martens, K. J. A., Vlot, M., McKenzie, R. E., Almendros, C., Estrada Bonilla, B., Brocken, D. J. W., Hohlbein, J. & Brouns, S. J. J., 2 Jan 2020, In : Molecular Cell. 77, 1, p. 39-50.e10

Research output: Contribution to journalArticleAcademicpeer-review

Clustered Regularly Interspaced Short Palindromic Repeats
Interspersed Repetitive Sequences
Bacteria
DNA
RNA
Open Access
Magnetic resonance
whey protein
magnetic resonance imaging
nuclear magnetic resonance spectroscopy
Digestion

Impact of water degumming and enzymatic degumming on gum mesostructure formation in crude soybean oil

Nikolaeva, T., Rietkerk, T., Sein, A., Dalgliesh, R., Bouwman, W. G., Velichko, E., Tian, B., Van As, H. & van Duynhoven, J., 1 May 2020, In : Food Chemistry. 311, 126017.

Research output: Contribution to journalArticleAcademicpeer-review

Degumming
degumming
Soybean Oil
Petroleum
Gingiva

Morphological and physiological responses of the potato stem transport tissues to dehydration stress

Aliche, E. B., Prusova-Bourke, A., Ruiz-Sanchez, M., Oortwijn, M., Gerkema, E., Van As, H., Visser, R. G. F. & van der Linden, C. G., 8 Jan 2020, In : Planta. 251, 2, 45.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Xylem
desiccation (plant physiology)
Solanum tuberosum
Dehydration
plant response

Photosystem II core quenching in desiccated Leptolyngbya ohadii

Ranjbar Choubeh, R., Bar-Eyal, L., Paltiel, Y., Keren, N., Struik, P. C. & van Amerongen, H., Jan 2020, In : Photosynthesis Research. 143, 1, p. 13-18

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Leptolyngbya
High intensity light
Photosystem II Protein Complex
photosystem II
light intensity
2019

31P NMR assessment of the phosvitin-iron complex in mayonnaise

Merkx, D. W. H., Delić, F., Wierenga, P. A., Hennebelle, M. & van Duynhoven, J. P. M., Sep 2019, In : Magnetic Resonance in Chemistry. 57, 9, p. 540-547 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Phosvitin
Iron
Nuclear magnetic resonance
Lipids
Phosphoserine

3D biofilm visualization and quantification on granular bioanodes with magnetic resonance imaging

Caizán-Juanarena, L., Krug, J. R., Vergeldt, F. J., Kleijn, J. M., Velders, A. H., van As, H. & ter Heijne, A., 15 Dec 2019, In : Water Research. 167, 115059.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Biofilms
Magnetic resonance
biofilm
visualization
Visualization
3 Citations (Scopus)

Anhydrobiosis: Inside yeast cells

Rapoport, A., Golovina, E. A., Gervais, P., Dupont, S. & Beney, L., 2019, In : Biotechnology Advances. 37, 1, p. 51-67

Research output: Contribution to journalArticleAcademicpeer-review

Microorganisms
Yeast
Yeasts
Cells
Dehydration
1 Citation (Scopus)

A versatile shear cell for investigation of structure of food materials under shear

Velichko, E., Tian, B., Nikolaeva, T., Koning, J., van Duynhoven, J. & Bouwman, W. G., 5 Apr 2019, In : Colloids and Surfaces A: Physicochemical and Engineering Aspects. 566, p. 21-28

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Neutron scattering
food
shear
X ray scattering
Geometry
1 Citation (Scopus)
Open Access
Photosystem I Protein Complex
Digitonin
Arabidopsis
Antennas
Light
1 Citation (Scopus)

Efficiency of excitation energy trapping in the green photosynthetic bacterium Chlorobaculum tepidum

Ranjbar Choubeh, R., Koehorst, R. B. M., Bína, D., Struik, P. C., Pšenčík, J. & van Amerongen, H., 1 Feb 2019, In : Biochimica et Biophysica Acta - Bioenergetics. 1860, 2, p. 147-154

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Excitation energy
Bacteria
Light
Photons
Chlorobi

Electrochemically Gated Long-Distance Charge Transport in Photosystem I

López-Martínez, M., López-Ortiz, M., Antinori, M. E., Wientjes, E., Nin-Hill, A., Rovira, C., Croce, R., Díez-Pérez, I. & Gorostiza, P., 16 Sep 2019, In : Angewandte Chemie - International Edition. 58, 38, p. 13280-13284

Research output: Contribution to journalArticleAcademicpeer-review

Photosystem I Protein Complex
Charge transfer
Scanning tunneling microscopy
Proteins
Potential energy
1 Citation (Scopus)

Enabling High Spectral Resolution of Liquid Mixtures in Porous Media by Antidiagonal Projections of Two-Dimensional 1H NMR COSY Spectra

Terenzi, C., Sederman, A. J., Mantle, M. D. & Gladden, L. F., 11 Sep 2019, In : Journal of Physical Chemistry Letters. 10, 19, p. 5781-5785

Research output: Contribution to journalArticleAcademicpeer-review

Spectral resolution
porous materials
spectral resolution
Porous materials
projection
1 Citation (Scopus)

Evaluating single-particle tracking by photo-activation localization microscopy (sptPALM) in Lactococcus lactis

van Beljouw, S. P. B., van der Els, S., Martens, K. J. A., Kleerebezem, M., Bron, P. A. & Hohlbein, J., 8 Mar 2019, In : Physical Biology. 16, 3, 1 p.

Research output: Contribution to journalArticleAcademicpeer-review

Lactococcus lactis
Microscopy
CRISPR-Cas Systems
Fermentation
Lactic Acid

Full 1H and 13C NMR spectral assignment of conjugated valerolactone metabolites isolated from urine of black tea consumers by means of SPE-prepLC–MS–LC–MS-NMR

de Roo, N., Wilmsen, S. M. J., Mihaleva, V. V., Jacobs, D. M. & van Duynhoven, J. P. M., Sep 2019, In : Magnetic Resonance in Chemistry. 57, 9, p. 548-557 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Metabolites
Nuclear magnetic resonance
Polyphenols
Bioactivity
Mass spectrometry
2 Citations (Scopus)

High-throughput, non-equilibrium studies of single biomolecules using glass-made nanofluidic devices

Fontana, M., Fijen, C., Lemay, S. G., Mathwig, K. & Hohlbein, J., 7 Jan 2019, In : Lab on a Chip. 19, 1, p. 79-86

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Nanofluidics
Biomolecules
Glass
DNA
Throughput
1 Citation (Scopus)

Ionic interaction and liquid absorption by wood in lignocellulose inorganic mineral binder composites

Doudart de la Grée, G. C. H., Caprai, V., van Dam, J. E. G., van As, H., Brouwers, H. J. H. & Yu, Q. L., 1 Jan 2019, In : Journal of Cleaner Production. 206, p. 808-818

Research output: Contribution to journalArticleAcademicpeer-review

Binders
Wood
Minerals
cement
liquid

Light acclimation of the colonial green alga botryococcus braunii strain showa

van den Berg, T. E., Chukhutsina, V. U., van Amerongen, H., Croce, R. & van Oort, B., Mar 2019, In : Plant Physiology. 179, 3, p. 1132-1143

Research output: Contribution to journalArticleAcademicpeer-review

Chlorophyta
Acclimatization
acclimation
algae
Chlamydomonas reinhardtii
sap flow
xylem vessels
magnetic resonance imaging
earlywood
water flow
1 Citation (Scopus)

Manipulation of Recrystallization and Network Formation of Oil-Dispersed Micronized Fat Crystals

Nikolaeva, T., den Adel, R., van der Sman, R., Martens, K. J. A., Van As, H., Voda, A. & van Duynhoven, J., 12 Feb 2019, In : Langmuir. 35, 6, p. 2221-2229

Research output: Contribution to journalArticleAcademicpeer-review

fats
Oils and fats
manipulators
Oils
oils
1 Citation (Scopus)

Quantifying Localized Macromolecular Dynamics within Hydrated Cellulose Fibril Aggregates

Chen, P., Terenzi, C., Furó, I., Berglund, L. A. & Wohlert, J., 19 Sep 2019, In : Macromolecules. 52, 19, p. 7278-7288

Research output: Contribution to journalArticleAcademicpeer-review

Cellulose
Nuclear magnetic resonance
Molecular dynamics
Computer simulation
Nanocomposites

Selective oil-phase rheo-MRI velocity profiles to monitor heterogeneous flow behavior of oil/water food emulsions

Serial, M. R., Nikolaeva, T., Vergeldt, F. J., van Duynhoven, J. & van As, H., Sep 2019, In : Magnetic Resonance in Chemistry. 57, 9, p. 766-770 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

Substrate conformational dynamics facilitate structure-specific recognition of gapped DNA by DNA polymerase

Craggs, T. D., Sustarsic, M., Plochowietz, A., Mosayebi, M., Kaju, H., Cuthbert, A., Hohlbein, J., Domicevica, L., Biggin, P. C., Doye, J. P. K. & Kapanidis, A. N., 18 Nov 2019, In : Nucleic acids research. 47, 20, p. 10788-10800 13 p., gkz797.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
DNA-Directed DNA Polymerase
DNA
DNA Polymerase I
Nucleic Acid Conformation
DNA Primers
3 Citations (Scopus)

The relevance of dynamic thylakoid organisation to photosynthetic regulation

Johnson, M. P. & Wientjes, E., 20 Jun 2019, In : Biochimica et Biophysica Acta - Bioenergetics.

Research output: Contribution to journalArticleAcademicpeer-review

Thylakoids
Light
Photosynthesis
NADP
Adenosine Triphosphate

Two Quenchers Formed During Photodamage of Phostosystem II and The Role of One Quencher in Preemptive Photoprotection

Zavafer, A., Iermak, I., Cheah, M. H. & Chow, W. S., 21 Nov 2019, In : Scientific Reports. 9, 17275.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Fluorescence
Photosystem II Protein Complex
Chlorophyll
Physiological Phenomena
Qi
2 Citations (Scopus)

Visualisation of dCas9 target search in vivo using an open-microscopy framework

Martens, K. J. A., van Beljouw, S. P. B., van der Els, S., Vink, J. N. A., Baas, S., Vogelaar, G. A., Brouns, S. J. J., van Baarlen, P., Kleerebezem, M. & Hohlbein, J., 7 Aug 2019, In : Nature Communications. 10, 1, 3552.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Clustered Regularly Interspaced Short Palindromic Repeats
Microscopy
Microscopic examination
Screening
Plasmids
2018
10 Citations (Scopus)

A functional compartmental model of the Synechocystis PCC 6803 phycobilisome

van Stokkum, I. H. M., Gwizdala, M., Tian, T., Snellenburg, J. J., van Grondelle, R., van Amerongen, H. & Berera, R., Mar 2018, In : Photosynthesis Research. 135, 1-3, p. 87-102

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Phycobilisomes
phycobilisome
Synechocystis
Pigments
pigments
6 Citations (Scopus)

A possible molecular basis for photoprotection in the minor antenna proteins of plants

Fox, K. F., Ünlü, C., Balevičius, V., Ramdour, B. N., Kern, C., Pan, X., Li, M., van Amerongen, H. & Duffy, C. D. P., 1 Jul 2018, In : Biochimica et Biophysica Acta - Bioenergetics. 1859, 7, p. 471-481

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Plant Proteins
Carotenoids
Quenching
Antennas
Light
9 Citations (Scopus)

Dynamic changes between two LHCX-related energy quenching sites control diatom photoacclimation

Taddei, L., Chukhutsina, V. U., Lepetit, B., Stella, G. R., Bassi, R., van Amerongen, H., Bouly, J. P., Jaubert, M., Finazzi, G. & Falciatore, A., Jul 2018, In : Plant Physiology. 177, 3, p. 953-965

Research output: Contribution to journalArticleAcademicpeer-review

Diatoms
Bacillariophyceae
Light
energy
antennae
16 Citations (Scopus)

Dynamic feedback of the photosystem II reaction centre on photoprotection in plants

Farooq, S., Chmeliov, J., Wientjes, E., Koehorst, R., Bader, A., Valkunas, L., Trinkunas, G. & van Amerongen, H., May 2018, In : Nature Plants. 4, p. 225-231

Research output: Contribution to journalArticleAcademicpeer-review

photostability
photosystem II
fluorescence
wavelengths
fluorescence emission spectroscopy
3 Citations (Scopus)

Fat Crystallite Thickness Distribution Based on SAXD Peak Shape Analysis

den Adel, R., van Malssen, K., van Duynhoven, J., Mykhaylyk, O. O. & Voda, A., Sep 2018, In : European Journal of Lipid Science and Technology. 120, 9, 1800222.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
fat thickness
Oils and fats
X-ray diffraction
X-Ray Diffraction
Triglycerides

Global testing of shifts in metabolic phenotype

Fazelzadeh, P., Hoefsloot, H. C. J., Hankemeier, T., Most, J., Kersten, S., Blaak, E. E., Boekschoten, M. & van Duynhoven, J., 4 Oct 2018, In : Metabolomics. 14, 10, 139.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Polyphenols
Weight Loss
Phenotype
Fasting
Testing
1 Citation (Scopus)

Heterogeneity of Network Structures and Water Dynamics in κ‑Carrageenan Gels Probed by Nanoparticle Diffusometry

de Kort, D. W., Schuster, E., Hoeben, F. J. M., Barnes, R., Emondts, M., Janssen, H. M., Lorén, N., Han, S., Van As, H. & van Duynhoven, J. P. M., 22 Aug 2018, In : Langmuir. 34, p. 11110-11120

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Carrageenan
Gels
gels
Nanoparticles
nanoparticles
7 Citations (Scopus)

Modulating D-amino acid oxidase (DAAO) substrate specificity through facilitated solvent access

Subramanian, K., Góra, A., Spruijt, R., Mitusińska, K., Suarez-Diez, M., Martins Dos Santos, V. & Schaap, P. J., 1 Jan 2018, In : PLoS ONE. 13, 6, e0198990.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
D-Amino-Acid Oxidase
substrate specificity
Substrate Specificity
amino acids
Substrates
6 Citations (Scopus)

Networks of micronized fat crystals grown under static conditions

Nikolaeva, T., den Adel, R., Velichko, E., Bouwman, W. G., Hermida-Merino, D., Van As, H., Voda, A. & Van Duynhoven, J., 25 Apr 2018, In : Food & Function. 9, 4, p. 2102-2111

Research output: Contribution to journalArticleAcademicpeer-review

crystals
Fats
lipids
shears
Fractals
8 Citations (Scopus)
Open Access
Program processors
Microscopic examination
microscopy
Molecules
molecules
2 Citations (Scopus)

Picosecond excitation energy transfer of allophycocyanin studied in solution and in crystals

Ranjbar Choubeh, R., Sonani, R. R., Madamwar, D., Struik, P. C., Bader, A. N., Robert, B. & van Amerongen, H., Mar 2018, In : Photosynthesis Research. 135, 1-3, p. 79-86

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Excitation energy
Energy Transfer
phycobilisome
energy transfer
Energy transfer
40 Citations (Scopus)

Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study

Hellenkamp, B., Schmid, S., Doroshenko, O., Opanasyuk, O., Kühnemuth, R., Rezaei Adariani, S., Ambrose, B., Aznauryan, M., Barth, A., Birkedal, V., Bowen, M. E., Chen, H., Cordes, T., Eilert, T., Fijen, C., Gebhardt, C., Götz, M., Gouridis, G., Gratton, E., Ha, T. & 43 others, Hao, P., Hanke, C. A., Hartmann, A., Hendrix, J., Hildebrandt, L. L., Hirschfeld, V., Hohlbein, J., Hua, B., Hübner, C. G., Kallis, E., Kapanidis, A. N., Kim, J. Y., Krainer, G., Lamb, D. C., Lee, N. K., Lemke, E. A., Levesque, B., Levitus, M., McCann, J. J., Naredi-Rainer, N., Nettels, D., Ngo, T., Qiu, R., Robb, N. C., Röcker, C., Sanabria, H., Schlierf, M., Schröder, T., Schuler, B., Seidel, H., Streit, L., Thurn, J., Tinnefeld, P., Tyagi, S., Vandenberk, N., Vera, A. M., Weninger, K. R., Wünsch, B., Yanez-Orozco, I. S., Michaelis, J., Seidel, C. A. M., Craggs, T. D. & Hugel, T., 31 Aug 2018, In : Nature Methods. 15, 9, p. 669-676

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Benchmarking
Energy Transfer
Energy transfer
Molecules
Structural Models
6 Citations (Scopus)

Quantification of food polysaccharide mixtures by ¹H NMR

Merkx, D. W. H., Westphal, Y., van Velzen, E. J. J., Thakoer, K. V., de Roo, N. & van Duynhoven, J. P. M., 1 Jan 2018, In : Carbohydrate Polymers. 179, p. 379-385

Research output: Contribution to journalArticleAcademicpeer-review

Polysaccharides
Nuclear magnetic resonance
Monosaccharides
Hydrolysis
Pectins
4 Citations (Scopus)

Quantitative Structural Analysis of Fat Crystal Networks by Means of Raman Confocal Imaging

Martens, K. J. A., van Dalen, G., Heussen, P. C. M., Voda, M. A., Nikolaeva, T. & van Duynhoven, J. P. M., Mar 2018, In : JAOCS, Journal of the American Oil Chemists' Society. 95, 3, p. 259-265

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Oils and fats
Structural analysis
Fats
Imaging techniques
Crystals
2 Citations (Scopus)

Rapid and noninvasive quality control of anhydrous milk fat by PTR-MS: The effect of storage time and packaging

Pedrotti, M., Khomenko, I., Cappellin, L., Fontana, M., Somenzi, M., Falchero, L., Arveda, M., Fogliano, V. & Biasioli, F., 1 Jan 2018, In : Journal of Mass Spectrometry. 53, 9, p. 753-762

Research output: Contribution to journalArticleAcademicpeer-review

Proton transfer
Quality control
Mass spectrometry
Packaging
Fats
8 Citations (Scopus)

Rapid Quantitative Profiling of Lipid Oxidation Products in a Food Emulsion by 1H NMR

Merkx, D. W. H., Hong, G. T. S., Ermacora, A. & Van Duynhoven, J. P. M., 5 Mar 2018, In : Analytical Chemistry. 90, 7, p. 4863-4870

Research output: Contribution to journalArticleAcademicpeer-review

Emulsions
Nuclear magnetic resonance
Lipids
Oxidation
Hydrogen Peroxide
6 Citations (Scopus)

State transitions in the cyanobacterium Synechococcus elongatus 7942 involve reversible quenching of the photosystem II core

Ranjbar Choubeh, R., Wientjes, E., Struik, P. C., Kirilovsky, D. & van Amerongen, H., 1 Oct 2018, In : Biochimica et Biophysica Acta - Bioenergetics. 1859, 10, p. 1059-1066

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Synechococcus
Photosystem II Protein Complex
Cyanobacteria
Photosystem I Protein Complex
Quenching
7 Citations (Scopus)

Weight loss moderately affects the mixed meal challenge response of the plasma metabolome and transcriptome of peripheral blood mononuclear cells in abdominally obese subjects

Fazelzadeh, P., Hangelbroek, R. W. J., Joris, P. J., Schalkwijk, C. G., Esser, D., Afman, L., Hankemeier, T., Jacobs, D. M., Mihaleva, V. V., Kersten, S., van Duynhoven, J. & Boekschoten, M. V., 1 Apr 2018, In : Metabolomics. 14, 4, 46.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Metabolome
Transcriptome
Meals
Weight Loss
Blood Cells
2017

A Nanofluidic Mixing Device for High-throughput Fluorescence Sensing of Single Molecules

Mathwig, K., Fijen, C., Fontana, M., Lemay, S. G. & Hohlbein, J. C., 2017, In : Procedia Technology. 27, p. 141-142 2 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Nanofluidics
Fluorescence
Throughput
Molecules
Energy transfer
1 Citation (Scopus)

Application of laser-based photoacoustic spectroscopy and colorimetry for quantification of anthocyanin in hard boiled candy

Kovács, M., Dóka, O., Bicanic, D. & Ajtony, Z., 2017, In : Microchemical Journal. 135, p. 100-104

Research output: Contribution to journalArticleAcademicpeer-review

Photoacoustic spectroscopy
Colorimetry
Anthocyanins
Spectrophotometry
Lasers
9 Citations (Scopus)

A single-molecule FRET sensor for monitoring DNA synthesis in real time

Fijen, C., Monton Silva, A., Hochkoeppler, A. & Hohlbein, J. C., 2017, In : Physical Chemistry Chemical Physics. 19, 6, p. 4222-4230

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Energy transfer
deoxyribonucleic acid
energy transfer
Molecules
DNA-Directed DNA Polymerase
7 Citations (Scopus)

Changes in aggregation states of light-harvesting complexes as a mechanism for modulating energy transfer in desert crust cyanobacteria

Bar Eyal, L., Ranjbar Choubeh, R., Cohen, E., Eisenberg, I., Tamburu, C., Dorogi, M., Ünnep, R., Appavou, M-S., Revo, R., Raviv, U., Reich, Z., Garab, G., van Amerongen, H., Paltiel, Y. & Keren, N., 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 35, p. 9481-9486

Research output: Contribution to journalArticleAcademicpeer-review

deserts
crusts
energy transfer
antenna components
dew
4 Citations (Scopus)

Effect of theobromine consumption on serum lipoprotein profiles in apparently healthy humans with low HDL-cholesterol concentrations

Jacobs, D. M., Smolders, L., Lin, Y., de Roo, N., Trautwein, E. A., van Duynhoven, J., Mensink, R. P., Plat, J. & Mihaleva, V. V., 24 Aug 2017, In : Frontiers in Molecular Biosciences. 4, AUG, 59.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Theobromine
HDL Cholesterol
Lipoproteins
Triglycerides
Cholesterol