Research Output

2020

Advances in our understanding of the structure and functionality of edible fats and fat mimetics

Marangoni, A. G., Van Duynhoven, J. P. M., Acevedo, N. C., Nicholson, R. A. & Patel, A. R., 1 Jan 2020, In : Soft Matter. 16, 2, p. 289-306 18 p.

Research output: Contribution to journalArticleAcademicpeer-review

Author Correction: A global database for metacommunity ecology, integrating species, traits, environment and space

Jeliazkov, A., Mijatovic, D., Chantepie, S., Andrew, N., Arlettaz, R., Barbaro, L., Barsoum, N., Bartonova, A., Belskaya, E., Bonada, N., Brind’Amour, A., Carvalho, R., Castro, H., Chmura, D., Choler, P., Chong-Seng, K., Cleary, D., Cormont, A., Cornwell, W., de Campos, R. & 60 others, de Voogd, N., Doledec, S., Drew, J., Dziock, F., Eallonardo, A., Edgar, M. J., Farneda, F., Hernandez, D. F., Frenette-Dussault, C., Fried, G., Gallardo, B., Gibb, H., Gonçalves-Souza, T., Higuti, J., Humbert, J. Y., Krasnov, B. R., Saux, E. L., Lindo, Z., Lopez-Baucells, A., Lowe, E., Marteinsdottir, B., Martens, K., Meffert, P., Mellado-Díaz, A., Menz, M. H. M., Meyer, C. F. J., Miranda, J. R., Mouillot, D., Ossola, A., Pakeman, R., Pavoine, S., Pekin, B., Pino, J., Pocheville, A., Pomati, F., Poschlod, P., Prentice, H. C., Purschke, O., Raevel, V., Reitalu, T., Renema, W., Ribera, I., Robinson, N., Robroek, B., Rocha, R., Shieh, S. H., Spake, R., Staniaszek-Kik, M., Stanko, M., Tejerina-Garro, F. L., ter Braak, C., Urban, M. C., van Klink, R., Villéger, S., Wegman, R., Westgate, M. J., Wolff, J., Żarnowiec, J., Zolotarev, M. & Chase, J. M., 2 Mar 2020, In : Scientific Data. 7, 1, 79.

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access

Direct Visualization of Native CRISPR Target Search in Live Bacteria Reveals Cascade DNA Surveillance Mechanism

Vink, J. N. A., Martens, K. J. A., Vlot, M., McKenzie, R. E., Almendros, C., Estrada Bonilla, B., Brocken, D. J. W., Hohlbein, J. & Brouns, S. J. J., 2 Jan 2020, In : Molecular Cell. 77, 1, p. 39-50.e10

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)
Open Access
1 Citation (Scopus)

High Field MicroMRI Velocimetric Measurement of Quantitative Local Flow Curves

Nikolaeva, T., Vergeldt, F. J., Serial, R., Dijksman, J. A., Venema, P., Voda, A., Van Duynhoven, J. & Van As, H., 13 Feb 2020, In : Analytical Chemistry. 92, 6, p. 4193-4200

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Impact of water degumming and enzymatic degumming on gum mesostructure formation in crude soybean oil

Nikolaeva, T., Rietkerk, T., Sein, A., Dalgliesh, R., Bouwman, W. G., Velichko, E., Tian, B., Van As, H. & van Duynhoven, J., 1 May 2020, In : Food Chemistry. 311, 126017.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)
Open Access
2 Citations (Scopus)

Magnetic Resonance Microscopy at Cellular Resolution and Localised Spectroscopy of Medicago truncatula at 22.3 Tesla

van Schadewijk, R., Krug, J. R., Shen, D., Sankar Gupta, K. B. S., Vergeldt, F. J., Bisseling, A. H. J., Webb, A. G., Van As, H., Velders, A. H., de Groot, H. J. M. & Alia, A., 22 Jan 2020, In : Scientific Reports. 10, 1, 971.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Morphological and physiological responses of the potato stem transport tissues to dehydration stress

Aliche, E. B., Prusova-Bourke, A., Ruiz-Sanchez, M., Oortwijn, M., Gerkema, E., Van As, H., Visser, R. G. F. & van der Linden, C. G., 8 Jan 2020, In : Planta. 251, 2, 45.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Photosystem II core quenching in desiccated Leptolyngbya ohadii

Ranjbar Choubeh, R., Bar-Eyal, L., Paltiel, Y., Keren, N., Struik, P. C. & van Amerongen, H., Jan 2020, In : Photosynthesis Research. 143, 1, p. 13-18

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

The relevance of dynamic thylakoid organisation to photosynthetic regulation

Johnson, M. P. & Wientjes, E., 1 Apr 2020, In : Biochimica et Biophysica Acta - Bioenergetics. 1861, 4, 148039.

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Ultrafast processes in photosynthetic light-harvesting

Wientjes, E. & Lambrev, P., 1 May 2020, In : Photosynthesis Research. 144, 2, p. 123-125 3 p.

Research output: Contribution to journalEditorialAcademic

Open Access
2019

31P NMR assessment of the phosvitin-iron complex in mayonnaise

Merkx, D. W. H., Delić, F., Wierenga, P. A., Hennebelle, M. & van Duynhoven, J. P. M., Sep 2019, In : Magnetic Resonance in Chemistry. 57, 9, p. 540-547 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

3D biofilm visualization and quantification on granular bioanodes with magnetic resonance imaging

Caizán-Juanarena, L., Krug, J. R., Vergeldt, F. J., Kleijn, J. M., Velders, A. H., van As, H. & ter Heijne, A., 15 Dec 2019, In : Water Research. 167, 115059.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Anhydrobiosis: Inside yeast cells

Rapoport, A., Golovina, E. A., Gervais, P., Dupont, S. & Beney, L., 2019, In : Biotechnology Advances. 37, 1, p. 51-67

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Applications of magnetic resonance in food science

van Duynhoven, J. & Rondeau-Mouro, C., Sep 2019, In : Magnetic Resonance in Chemistry. 57, 9, p. 539-539

Research output: Contribution to journalEditorialAcademic

A versatile shear cell for investigation of structure of food materials under shear

Velichko, E., Tian, B., Nikolaeva, T., Koning, J., van Duynhoven, J. & Bouwman, W. G., 5 Apr 2019, In : Colloids and Surfaces A: Physicochemical and Engineering Aspects. 566, p. 21-28

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Corrigendum to “Quantification of lipoprotein profiles by nuclear magnetic resonance spectroscopy and multivariate data analysis”

Aru, V., Lam, C., Khakimov, B., Hoefsloot, H. C. J., Zwanenburg, G., Lind, M. V., Schäfer, H., van Duynhoven, J., Jacobs, D. M., Smilde, A. K. & Engelsen, S. B., Oct 2019, In : TrAC - Trends in Analytical Chemistry. 119, 115631.

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access
Open Access
1 Citation (Scopus)

Efficiency of excitation energy trapping in the green photosynthetic bacterium Chlorobaculum tepidum

Ranjbar Choubeh, R., Koehorst, R. B. M., Bína, D., Struik, P. C., Pšenčík, J. & van Amerongen, H., 1 Feb 2019, In : Biochimica et Biophysica Acta - Bioenergetics. 1860, 2, p. 147-154

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Electrochemically Gated Long-Distance Charge Transport in Photosystem I

López-Martínez, M., López-Ortiz, M., Antinori, M. E., Wientjes, E., Nin-Hill, A., Rovira, C., Croce, R., Díez-Pérez, I. & Gorostiza, P., 16 Sep 2019, In : Angewandte Chemie - International Edition. 58, 38, p. 13280-13284

Research output: Contribution to journalArticleAcademicpeer-review

Enabling High Spectral Resolution of Liquid Mixtures in Porous Media by Antidiagonal Projections of Two-Dimensional 1H NMR COSY Spectra

Terenzi, C., Sederman, A. J., Mantle, M. D. & Gladden, L. F., 11 Sep 2019, In : Journal of Physical Chemistry Letters. 10, 19, p. 5781-5785

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Evaluating single-particle tracking by photo-activation localization microscopy (sptPALM) in Lactococcus lactis

van Beljouw, S. P. B., van der Els, S., Martens, K. J. A., Kleerebezem, M., Bron, P. A. & Hohlbein, J., 8 Mar 2019, In : Physical Biology. 16, 3, 1 p.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Full 1H and 13C NMR spectral assignment of conjugated valerolactone metabolites isolated from urine of black tea consumers by means of SPE-prepLC–MS–LC–MS-NMR

de Roo, N., Wilmsen, S. M. J., Mihaleva, V. V., Jacobs, D. M. & van Duynhoven, J. P. M., Sep 2019, In : Magnetic Resonance in Chemistry. 57, 9, p. 548-557 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

High-throughput, non-equilibrium studies of single biomolecules using glass-made nanofluidic devices

Fontana, M., Fijen, C., Lemay, S. G., Mathwig, K. & Hohlbein, J., 7 Jan 2019, In : Lab on a Chip. 19, 1, p. 79-86

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Ionic interaction and liquid absorption by wood in lignocellulose inorganic mineral binder composites

Doudart de la Grée, G. C. H., Caprai, V., van Dam, J. E. G., van As, H., Brouwers, H. J. H. & Yu, Q. L., 1 Jan 2019, In : Journal of Cleaner Production. 206, p. 808-818

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Light acclimation of the colonial green alga botryococcus braunii strain showa

van den Berg, T. E., Chukhutsina, V. U., van Amerongen, H., Croce, R. & van Oort, B., Mar 2019, In : Plant Physiology. 179, 3, p. 1132-1143

Research output: Contribution to journalArticleAcademicpeer-review

Manipulation of Recrystallization and Network Formation of Oil-Dispersed Micronized Fat Crystals

Nikolaeva, T., den Adel, R., van der Sman, R., Martens, K. J. A., Van As, H., Voda, A. & van Duynhoven, J., 12 Feb 2019, In : Langmuir. 35, 6, p. 2221-2229

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Multiscale assessment of food lipid structures

Nikolaeva, T., 2019, Wageningen: Wageningen University. 204 p.

Research output: Thesisinternal PhD, WU

Open Access

Photosynthesis 2.0

Aarts, M. G. M., van Amerongen, H., Bock, R., Carmo-Silva, E., Croce, R., Finazzi, G., Foyer, C., Genty, B., Harbinson, J., Hibberd, J., Klein Lankhorst, R. M., Schranz, M. E., Struik, P. C. & Weijers, D., 2019, 5 p. Wageningen University and Research.

Research output: Other contributionPamphlet

Open Access

Quantifying Localized Macromolecular Dynamics within Hydrated Cellulose Fibril Aggregates

Chen, P., Terenzi, C., Furó, I., Berglund, L. A. & Wohlert, J., 19 Sep 2019, In : Macromolecules. 52, 19, p. 7278-7288

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Selective oil-phase rheo-MRI velocity profiles to monitor heterogeneous flow behavior of oil/water food emulsions

Serial, M. R., Nikolaeva, T., Vergeldt, F. J., van Duynhoven, J. & van As, H., Sep 2019, In : Magnetic Resonance in Chemistry. 57, 9, p. 766-770 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Substrate conformational dynamics facilitate structure-specific recognition of gapped DNA by DNA polymerase

Craggs, T. D., Sustarsic, M., Plochowietz, A., Mosayebi, M., Kaju, H., Cuthbert, A., Hohlbein, J., Domicevica, L., Biggin, P. C., Doye, J. P. K. & Kapanidis, A. N., 18 Nov 2019, In : Nucleic acids research. 47, 20, p. 10788-10800 13 p., gkz797.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

TD‐NMR to understand water‐binding food properties

Rodriguez Alonso, E., Vergeldt, F. J. & van der Goot, A. J., Sep 2019, In : Magnetic Resonance in Chemistry. 57, 9, p. 603-606 4 p.

Research output: Contribution to journalEditorialAcademic

Open Access
1 Citation (Scopus)

Two Quenchers Formed During Photodamage of Phostosystem II and The Role of One Quencher in Preemptive Photoprotection

Zavafer, A., Iermak, I., Cheah, M. H. & Chow, W. S., 21 Nov 2019, In : Scientific Reports. 9, 17275.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Visualisation of dCas9 target search in vivo using an open-microscopy framework

Martens, K. J. A., van Beljouw, S. P. B., van der Els, S., Vink, J. N. A., Baas, S., Vogelaar, G. A., Brouns, S. J. J., van Baarlen, P., Kleerebezem, M. & Hohlbein, J., 7 Aug 2019, In : Nature Communications. 10, 1, 3552.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)
2018

A functional compartmental model of the Synechocystis PCC 6803 phycobilisome

van Stokkum, I. H. M., Gwizdala, M., Tian, T., Snellenburg, J. J., van Grondelle, R., van Amerongen, H. & Berera, R., Mar 2018, In : Photosynthesis Research. 135, 1-3, p. 87-102

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
14 Citations (Scopus)

A possible molecular basis for photoprotection in the minor antenna proteins of plants

Fox, K. F., Ünlü, C., Balevičius, V., Ramdour, B. N., Kern, C., Pan, X., Li, M., van Amerongen, H. & Duffy, C. D. P., 1 Jul 2018, In : Biochimica et Biophysica Acta - Bioenergetics. 1859, 7, p. 471-481

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)

DNA polymerases at work: single-molecule observations of DNA synthesis in real time

Fijen, C., 2018, Wageningen: Wageningen University. 174 p.

Research output: Thesisinternal PhD, WU

Dynamic changes between two LHCX-related energy quenching sites control diatom photoacclimation

Taddei, L., Chukhutsina, V. U., Lepetit, B., Stella, G. R., Bassi, R., van Amerongen, H., Bouly, J. P., Jaubert, M., Finazzi, G. & Falciatore, A., Jul 2018, In : Plant Physiology. 177, 3, p. 953-965

Research output: Contribution to journalArticleAcademicpeer-review

15 Citations (Scopus)

Dynamic feedback of the photosystem II reaction centre on photoprotection in plants

Farooq, S., Chmeliov, J., Wientjes, E., Koehorst, R., Bader, A., Valkunas, L., Trinkunas, G. & van Amerongen, H., May 2018, In : Nature Plants. 4, p. 225-231

Research output: Contribution to journalArticleAcademicpeer-review

17 Citations (Scopus)

Erratum to: Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study

Hellenkamp, B., Schmid, S., Doroshenko, O., Opanasyuk, O., Kühnemuth, R., Adariani, S. R., Ambrose, B., Aznauryan, M., Barth, A., Birkedal, V., Bowen, M. E., Chen, H., Cordes, T., Eilert, T., Fijen, C., Gebhardt, C., Götz, M., Gouridis, G., Gratton, E., Ha, T. & 30 others, Hao, P., Hanke, C. A., Hartmann, A., Hendrix, J., Hildebrandt, L. L., Hirschfeld, V., Hohlbein, J., Hua, B., Hübner, C. G., Kallis, E., Kapanidis, A. N., Kim, J. Y., Krainer, G., Lamb, D. C., Lee, N. K., Lemke, E. A., Levesque, B., Levitus, M., McCann, J. J., Naredi-Rainer, N., Nettels, D., Ngo, T., Qiu, R., Robb, N. C., Röcker, C., Sanabria, H., Schlierf, M., Schröder, T., Schuler, B. & Seidel, H., 1 Sep 2018, In : Nature Methods. 15, 11, p. 984-984

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access
1 Citation (Scopus)

Fat Crystallite Thickness Distribution Based on SAXD Peak Shape Analysis

den Adel, R., van Malssen, K., van Duynhoven, J., Mykhaylyk, O. O. & Voda, A., Sep 2018, In : European Journal of Lipid Science and Technology. 120, 9, 1800222.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Global testing of shifts in metabolic phenotype

Fazelzadeh, P., Hoefsloot, H. C. J., Hankemeier, T., Most, J., Kersten, S., Blaak, E. E., Boekschoten, M. & van Duynhoven, J., 4 Oct 2018, In : Metabolomics. 14, 10, 139.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Heterogeneity of Network Structures and Water Dynamics in κ‑Carrageenan Gels Probed by Nanoparticle Diffusometry

de Kort, D. W., Schuster, E., Hoeben, F. J. M., Barnes, R., Emondts, M., Janssen, H. M., Lorén, N., Han, S., Van As, H. & van Duynhoven, J. P. M., 22 Aug 2018, In : Langmuir. 34, p. 11110-11120

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Introduction: light harvesting for photosynthesis

Pandit, A., van Stokkum, I. H. M., van Amerongen, H. & Croce, R., Mar 2018, In : Photosynthesis Research. 135, 1-3, p. 1-2

Research output: Contribution to journalEditorialAcademic

1 Citation (Scopus)

Light Harvesting in Photosynthesis

Croce, R. (ed.), van Grondelle, R. (ed.), van Amerongen, H. (ed.) & van Stokkum, I. H. M. (ed.), Feb 2018, Boca Raton: CRC Press. 597 p.

Research output: Book/ReportBook editingAcademic

Modern Magnetic Resonance

Webb, G. A. (ed.), Craik, D. J. (ed.), Martin, G. (ed.), Saito, H. (ed.), Standal, I. B. (ed.), van Duynhoven, J. (ed.), Aursand, M. (ed.), Bardet, M. (ed.), So, P-W. (ed.), Utz, M. (ed.) & Huang, Y., 15 Apr 2018, 2 ed. Springer Science.

Research output: Book/ReportBook editingAcademic