Biophysics

Search results

• Single-Molecule FRET-Resolved Protein Dynamics - from Plasmid to Data in Six Steps

  Vermeer, B. (Creator), van Ossenbruggen, J. (Creator) & Schmid, S. (Creator), Wageningen University & Research, 3 Jul 2023

  DOI: 10.5281/zenodo.7273265

  Dataset

• Data for 'Droplet size dependency and spatial heterogeneity of lipid oxidation in whey protein isolate-stabilized emulsions'

  Yang, S. (Creator), ten Klooster, S. (Creator) & Nguyen, K. (Creator), Wageningen University & Research, 25 Apr 2024

  DOI: 10.5281/zenodo.10118653

  Dataset

• Datasets and Simulator of the kinSoftChallenge & related article

  Götz, M. (Creator) & Schmid, S. (Creator), University of Montpellier, 14 Nov 2021

  DOI: 10.5281/zenodo.5701309

  Dataset

• Data underlying the TARDIS manuscript

  Martens, K. (Contributor), Turkowyd, B. (Contributor), Hohlbein, J. (Contributor) & Endesfelder, U. (Contributor), Universität Bonn, 11 May 2023

  DOI: 10.5281/zenodo.7900405

  Dataset

• Enabling spectrally resolved single-molecule localization microscopy at high emitter densities: Dataset

  Martens, K. (Creator), Gobes, M. (Creator), Archontaki, E. (Creator), Brillas, R. R. (Creator), Zijlstra, N. (Creator), Albertazzi, L. (Creator) & Hohlbein, J. (Creator), Wageningen University & Research, 29 Jun 2022

  DOI: 10.5281/zenodo.6778964

  Dataset

• Data underlying the publication: Spectral Diversity of Photosystem I from Flowering Plants

  Bos, P. (Creator), Wientjes, E. (Creator) & Schiphorst, C. (Creator), Wageningen University & Research, 21 Oct 2022

  DOI: 10.4121/20029532

  Dataset

• Hirschfeldia incana isolate:HINC_NIJ6 Genome sequencing and assembly

  Garassino, F. (Creator), Wijfjes, R. Y. (Creator), Boesten, R. (Creator), Reyes Marquez, F. (Creator), Becker, F. (Creator), Clapero, V. (Creator), van den Hatert, I. (Creator), Holmer, R. (Creator), Schranz, E. (Creator), Harbinson, J. (Creator), de Ridder, D. (Creator), Smit, S. (Creator) & Aarts, M. (Creator), Wageningen University & Research, 21 Nov 2022

  https://www.ncbi.nlm.nih.gov/bioproject/612790

  Dataset

• DATA

  Yang, S. (Creator), A. Verhoeff, A. (Creator), W.H. Merkx, D. (Creator), van Duynhoven, J. (Creator) & Hohlbein, J. (Creator), Wageningen University & Research, 17 Dec 2020

  DOI: 10.5281/zenodo.4271320

  Dataset

• Unravelling mechanisms of protein and lipid oxidation in mayonnaise at multiple length scales

  Yang, S. (Creator), Takeuchi, M. (Creator), Friedrich, H. (Creator), van Duynhoven, J. (Creator) & Hohlbein, J. (Creator), Wageningen University & Research, 3 Oct 2022

  DOI: 10.5281/zenodo.5938385

  Dataset

• Reciprocal cybrids reveal how organellar genomes affect plant phenotypes - RNA Sequencing

  Flood, P. (Creator), Theeuwen, T. (Creator), Schneeberger, K. (Creator), Keizer, P. (Creator), Kruijer, W. (Creator), Severing, E. (Creator), Kouklas, E. (Creator), Hageman, J. (Creator), Wijfjes, R. (Creator), Calvo Baltanas, V. (Creator), Becker, F. (Creator), Schnabel, S. (Creator), Willems, L. (Creator), Ligterink, W. (Creator), van Arkel, J. (Creator), Mumm, R. (Creator), Gualberto, J. M. (Creator), Savage, L. (Creator), Kramer, D. M. (Creator), Keurentjes, J. (Creator), van Eeuwijk, F. (Creator), Koornneef, M. (Creator), Harbinson, J. (Creator), Aarts, M. (Creator) & Wijnker, E. (Creator), Wageningen University, 12 Nov 2019

  https://www.ebi.ac.uk/ena/data/view/PRJEB35324

  Dataset

• Reciprocal cybrids reveal how organellar genomes affect plant phenotypes - Whole Genome Sequencing

  Flood, P. (Creator), Theeuwen, T. (Creator), Schneeberger, K. (Creator), Keizer, P. (Creator), Kruijer, W. (Creator), Severing, E. (Creator), Kouklas, E. (Creator), Hageman, J. (Creator), Wijfjes, R. (Creator), Calvo Baltanas, V. (Creator), Becker, F. (Creator), Schnabel, S. (Creator), Willems, L. (Creator), Ligterink, W. (Creator), van Arkel, J. (Creator), Mumm, R. (Creator), Gualberto, J. M. (Creator), Savage, L. (Creator), Kramer, D. M. (Creator), Keurentjes, J. (Creator), van Eeuwijk, F. (Creator), Koornneef, M. (Creator), Harbinson, J. (Creator), Aarts, M. (Creator) & Wijnker, E. (Creator), Wageningen University, 11 Nov 2019

  https://www.ebi.ac.uk/ena/data/view/PRJEB29654

  Dataset

• Design principles of a minimal auxin response system

  Kato, H. (Creator), Mutte, S. (Creator), Suzuki, H. (Creator), Crespo, I. (Creator), Das, S. (Creator), Radoeva, T. (Creator), Fontana, M. (Creator), Yoshitake, Y. (Creator), Hainiwa, E. (Creator), van den Berg, W. (Creator), Lindhoud, S. (Creator), Ishizaki, K. (Creator), Hohlbein, J. (Creator), Borst, J. W. (Creator), Boer, R. (Creator), Nishihama, R. (Creator), Kohchi, T. (Creator) & Weijers, D. (Creator), Wageningen University & Research, 13 Jul 2019

  https://www.ncbi.nlm.nih.gov/bioproject/554398

  Dataset

• NEOtrap data with cholesterol functionalized DNA origami spheres

  Wen, C. (Creator), Wageningen University & Research, 4 Sept 2022

  DOI: 10.5281/zenodo.7047595

  Dataset

• Can DyeCycling break the photobleaching limit in single-molecule FRET?

  Vermeer, B. (Creator) & Schmid, S. (Creator), Wageningen University & Research, 8 Feb 2022

  DOI: 10.5281/zenodo.5972932

  Dataset

• HohlbeinLab/OpenMicroscopy

  Hohlbein, J. (Creator), Diederich, B. (Creator), Prakash, K. (Creator), Shepherd, D. (Creator), Jahr, W. (Creator), Tutkus, M. (Creator), Phoess (Creator), Smit, J. (Creator), Haase, R. (Creator), Moore, J. (Creator), Barth, A. (Creator), Vladimirov, N. (Creator), Bowman, R. (Creator) & Vsaggiomo (Creator), Wageningen University & Research, 1 Apr 2022

  DOI: 10.5281/zenodo.6406819

  Dataset

• Data underlying: Expansion Microscopy Resolves the Thylakoid Structure of Spinach

  Wientjes, E. (Creator), Berentsen, J. (Creator) & Bos, P. (Creator), Wageningen University & Research, 2 Nov 2023

  DOI: 10.4121/6c533845-bfec-49d1-8e24-e8984a881bb1

  Dataset

• Data underlying the publication: Single chloroplast in folio imaging sheds light on photosystem energy redistribution during state transitions

  Verhoeven, D. (Creator), van Amerongen, H. (Creator) & Wientjes, E. (Creator), Wageningen University, 8 Feb 2023

  DOI: 10.4121/20473863

  Dataset

• Enabling single-molecule localization microscopy in turbid food emulsions

  Jabermoradi, A. (Creator), Yang, S. (Creator), Gobes, M. (Creator), van Duynhoven, J. (Creator) & Hohlbein, J. (Creator), Wageningen University & Research, 7 Mar 2021

  DOI: 10.5281/zenodo.5019187

  Dataset

• Cooperative action of separate interaction domains promotes high-affinity DNA binding of Arabidopsis thaliana ARF transcription factors

  Fontana, M. (Contributor), Roosjen, M. (Contributor), García, I. C. (Contributor), van den Berg, W. (Contributor), Malfois, M. (Contributor), Boer, R. (Contributor), Weijers, D. (Contributor) & Hohlbein, J. (Contributor), Wageningen University & Research, 16 Nov 2022

  DOI: 10.5281/zenodo.7249508

  Dataset

• Probing DNA - transcription factor interactions using single-molecule fluorescence detection in nanofluidic devices

  Fontana, M. (Creator), Ivanovaite, Š. (Creator), Lindhoud, S. (Creator), van der Wijk, E. (Creator), Mathwig, K. (Creator), van den Berg, W. (Creator), Weijers, D. (Creator) & Hohlbein, J. (Creator), Wageningen University & Research, 16 Jul 2021

  DOI: 10.5281/zenodo.5110578

  Dataset

• Reciprocal cybrids reveal how organellar genomes affect plant phenotypes

  Theeuwen, T. (Creator), Flood, P. (Creator), Schneeberger, K. (Creator), Kruijer, W. (Creator), Severing, E. (Creator), Kouklas, E. (Creator), Hageman, J. (Creator), Wijfjes, R. (Creator), Calvo Baltanas, V. (Creator), Becker, F. (Creator), Schnabel, S. (Creator), Willems, L. (Creator), Ligterink, W. (Creator), van Arkel, J. (Creator), Mumm, R. (Creator), Gualberto, J. M. (Creator), Savage, L. (Creator), Kramer, D. M. (Creator), Keurentjes, J. (Creator), van Eeuwijk, F. (Creator), Koornneef, M. (Creator), Harbinson, J. (Creator), Aarts, M. (Creator) & Wijnker, E. (Creator), Wageningen University & Research, 19 Dec 2019

  DOI: 10.5061/dryad.cz8w9gj05

  Dataset

• Data_for_'Adapting cryogenic correlative light and electron microscopy (cryo-CLEM) for food oxidation studies'

  Yang, S. (Creator), Takeuchi, M. (Creator), Joosten, R. R. M. (Creator), van Duynhoven, J. (Creator), Friedrich, H. (Creator) & Hohlbein, J. (Creator), Wageningen University & Research, 2023

  DOI: 10.5281/zenodo.10148507

  Dataset

• Live cell imaging reveals the trade-off between target search flexibility and efficiency for Cas9 and Cas12a

  Hohlbein, J. (Creator) & Olivi, L. (Creator), Wageningen University & Research, 16 Nov 2023

  DOI: 10.5281/zenodo.10142521

  Dataset

• Non-Invasive Rheo-MRI Study of Egg Yolk-Stabilized Emulsions: Yield Stress Decay and Protein Release

  Serial, R. (Creator), Arnaudov, L. N. (Creator), Stoyanov, S. (Creator), Dijksman, J. (Creator), Terenzi, C. (Creator) & van Duynhoven, J. (Creator), Wageningen University & Research, 26 Apr 2022

  DOI: 10.5281/zenodo.6491052

  Dataset

• Expression of protocadherin gamma in skeletal muscle tissue is associated with age and muscle weakness

  Hangelbroek, R. (Creator), Fazelzadeh, P. (Creator), Tieland, C. A. B. (Creator), Boekschoten, M. (Creator), Hooiveld, G. (Creator), van Duynhoven, J. (Creator), Timmons, J. (Creator), Verdijk, L. (Creator), de Groot, L. (Creator), van Loon, L. J. C. (Creator) & Müller, M. R. (Creator), Wageningen University, 24 Jul 2018

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE117525

  Dataset