Research Output

2020

A comparison of high-throughput plasma NMR protocols for comparative untargeted metabolomics

Bliziotis, N. G., Engelke, U. F. H., Aspers, R. L. E. G., Engel, J., Deinum, J., Timmers, H. J. L. M., Wevers, R. A. & Kluijtmans, L. A. J., 1 May 2020, In : Metabolomics. 16, 5, 64.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A global database for metacommunity ecology, integrating species, traits, environment and space

Jeliazkov, A., Mijatovic, D., Chantepie, S., Andrew, N., Arlettaz, R., Barbaro, L., Barsoum, N., Bartonova, A., Belskaya, E., Bonada, N., Brind’Amour, A., Carvalho, R., Castro, H., Chmura, D., Choler, P., Chong-Seng, K., Cleary, D., Cormont, A., Cornwell, W., de Campos, R. & 60 others, de Voogd, N., Doledec, S., Drew, J., Dziock, F., Eallonardo, A., Edgar, M. J., Farneda, F., Hernandez, D. F., Frenette-Dussault, C., Fried, G., Gallardo, B., Gibb, H., Gonçalves-Souza, T., Higuti, J., Humbert, J. Y., Krasnov, B. R., Saux, E. L., Lindo, Z., Lopez-Baucells, A., Lowe, E., Marteinsdottir, B., Martens, K., Meffert, P., Mellado-Díaz, A., Menz, M. H. M., Meyer, C. F. J., Miranda, J. R., Mouillot, D., Ossola, A., Pakeman, R., Pavoine, S., Pekin, B., Pino, J., Pocheville, A., Pomati, F., Poschlod, P., Prentice, H. C., Purschke, O., Raevel, V., Reitalu, T., Renema, W., Ribera, I., Robinson, N., Robroek, B., Rocha, R., Shieh, S. H., Spake, R., Staniaszek-Kik, M., Stanko, M., Tejerina-Garro, F. L., ter Braak, C., Urban, M. C., van Klink, R., Villéger, S., Wegman, R., Westgate, M. J., Wolff, J., Żarnowiec, J., Zolotarev, M. & Chase, J. M., 8 Jan 2020, In : Scientific Data. 7, 1, 6.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Alleles to Enhance Antioxidant Content in Maize-A Genome-Wide Association Approach

Alves, M. L., Bento-Silva, A., Carbas, B., Gaspar, D., Paulo, M., Brites, C., Mendes-Moreira, P., Brites, C. M., Bronze, M. D. R., Malosetti, M., Van Eeuwijk, F. & Vaz Patto, M. C., 1 Apr 2020, In : Journal of Agricultural and Food Chemistry. 68, 13, p. 4051-4061 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

A retain and refine approach to cumulative risk assessment

Kennedy, M. C., Hart, A. D. M., Kruisselbrink, J. W., van Lenthe, M., de Boer, W. J., van der Voet, H., Rorije, E., Sprong, C. & van Klaveren, J., 1 Apr 2020, In : Food and Chemical Toxicology. 138, 111223.

Research output: Contribution to journalArticleAcademicpeer-review

Assessment of Multi-Image Unmanned Aerial Vehicle Based High-Throughput Field Phenotyping of Canopy Temperature

Perich, G., Hund, A., Anderegg, J., Roth, L., Boer, M. P., Walter, A., Liebisch, F. & Aasen, H., 25 Feb 2020, In : Frontiers in Plant Science. 11, 150.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Assessment of the combined nitrate and nitrite exposure from food and drinking water: application of uncertainty around the nitrate to nitrite conversion factor

van den Brand, A. D., Beukers, M., Niekerk, M., van Donkersgoed, G., van der Aa, M., van de Ven, B., Bulder, A., van der Voet, H. & Sprong, C. R., 16 Jan 2020, In : Food Additives and Contaminants - Part A Chemistry, Analysis, Control, Exposure and Risk Assessment. 37, 4, p. 568-582

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Author Correction: A global database for metacommunity ecology, integrating species, traits, environment and space

Jeliazkov, A., Mijatovic, D., Chantepie, S., Andrew, N., Arlettaz, R., Barbaro, L., Barsoum, N., Bartonova, A., Belskaya, E., Bonada, N., Brind’Amour, A., Carvalho, R., Castro, H., Chmura, D., Choler, P., Chong-Seng, K., Cleary, D., Cormont, A., Cornwell, W., de Campos, R. & 60 others, de Voogd, N., Doledec, S., Drew, J., Dziock, F., Eallonardo, A., Edgar, M. J., Farneda, F., Hernandez, D. F., Frenette-Dussault, C., Fried, G., Gallardo, B., Gibb, H., Gonçalves-Souza, T., Higuti, J., Humbert, J. Y., Krasnov, B. R., Saux, E. L., Lindo, Z., Lopez-Baucells, A., Lowe, E., Marteinsdottir, B., Martens, K., Meffert, P., Mellado-Díaz, A., Menz, M. H. M., Meyer, C. F. J., Miranda, J. R., Mouillot, D., Ossola, A., Pakeman, R., Pavoine, S., Pekin, B., Pino, J., Pocheville, A., Pomati, F., Poschlod, P., Prentice, H. C., Purschke, O., Raevel, V., Reitalu, T., Renema, W., Ribera, I., Robinson, N., Robroek, B., Rocha, R., Shieh, S. H., Spake, R., Staniaszek-Kik, M., Stanko, M., Tejerina-Garro, F. L., ter Braak, C., Urban, M. C., van Klink, R., Villéger, S., Wegman, R., Westgate, M. J., Wolff, J., Żarnowiec, J., Zolotarev, M. & Chase, J. M., 2 Mar 2020, In : Scientific Data. 7, 1, 79.

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access

Benthic invertebrate and microbial biodiversity in sub-tropical urban rivers: Correlations with environmental variables and emerging chemicals

Peng, F. J., Pan, C. G., Zhang, N. S., ter Braak, C. J. F., Salvito, D., Selck, H., Ying, G. G. & Van den Brink, P. J., 20 Mar 2020, In : Science of the Total Environment. 709, 136281.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Compositional turnover and variation in Eemian pollen sequences in Europe

Felde, V. A., Flantua, S. G. A., Jenks, C. R., Benito, B. M., de Beaulieu, J. L., Kuneš, P., Magri, D., Nalepka, D., Risebrobakken, B., ter Braak, C. J. F., Allen, J. R. M., Granoszewski, W., Helmens, K. F., Huntley, B., Kondratienė, O., Kalniņa, L., Kupryjanowicz, M., Malkiewicz, M., Milner, A. M., Nita, M. & 8 others, Noryśkiewicz, B., Pidek, I. A., Reille, M., Salonen, S., Šeirienė, V., Winter, H., Tzedakis, P. C. & Birks, J. B., Jan 2020, In : Vegetation History and Archaeobotany. 29, 1, p. 101-109 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)
Open Access

Distribution of P1(D1) wart disease resistance in potato germplasm and GWAS identification of haplotype-specific SNP markers

Prodhomme, C., Vos, P. G., Paulo, M. J., Tammes, J. E., Visser, R. G. F., Vossen, J. H. & van Eck, H. J., 11 Feb 2020, In : Theoretical and Applied Genetics.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access

ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries

Thompson, P. M., Jahanshad, N., Ching, C. R. K., Salminen, L. E., Thomopoulos, S. I., Bright, J., Baune, B. T., Bertolín, S., Bralten, J., Bruin, W. B., Bülow, R., Chen, J., Chye, Y., Dannlowski, U., de Kovel, C. G. F., Donohoe, G., Eyler, L. T., Faraone, S. V., Favre, P., Filippi, C. A. & 30 others, Frodl, T., Garijo, D., Gil, Y., Grabe, H. J., Grasby, K. L., Hajek, T., Han, L. K. M., Hatton, S. N., Hilbert, K., Ho, T. C., Holleran, L., Homuth, G., Hosten, N., Houenou, J., Ivanov, I., Jia, T., Kelly, S., Klein, M., Kwon, J. S., Laansma, M. A., Leerssen, J., Lueken, U., Nunes, A., Neill, J. O., Opel, N., Piras, F., Piras, F., Postema, M. C., Pozzi, E. & Wang, L., 20 Mar 2020, In : Translational Psychiatry. 10, 1, 1 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)
Open Access

Genetic Variability of Morphological, Flowering, and Biomass Quality Traits in Hemp (Cannabis sativa L.)

Petit, J., Salentijn, E. M. J., Paulo, M. J., Thouminot, C., van Dinter, B. J., Magagnini, G., Gusovius, H. J., Tang, K., Amaducci, S., Wang, S., Uhrlaub, B., Müssig, J. & Trindade, L. M., 20 Feb 2020, In : Frontiers in Plant Science. 11, 102.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Open Access

Imputation of 3 million SNPs in the Arabidopsis regional mapping population

Arouisse, B., Korte, A., van Eeuwijk, F. & Kruijer, W., May 2020, In : Plant Journal. 102, 4, p. 872-882

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Interdisciplinary measurement: A systematic review of the case of sustainability

Brink, M., Hengeveld, G. M. & Tobi, H., May 2020, In : Ecological Indicators. 112, 106145.

Research output: Contribution to journalLiterature reviewAcademicpeer-review

Investigating microbial associations from sequencing survey data with co-correspondence analysis

Alric, B., ter Braak, C. J. F., Desdevises, Y., Lebredonchel, H. & Dray, S., Mar 2020, In : Molecular Ecology Resources. 20, 2, p. 468-480

Research output: Contribution to journalArticleAcademicpeer-review

Natural Variation in Portuguese Common Bean Germplasm Reveals New Sources of Resistance Against Fusarium oxysporum f. sp. phaseoli and Resistance-Associated Candidate Genes

Leitão, S. T., Malosetti, M., Song, Q., van Eeuwijk, F., Rubiales, D. & Vaz Patto, M. C., 1 Mar 2020, In : Phytopathology. 110, 3, p. 633-647 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Prevalence of coeliac disease in Northwest China: heterogeneity across Northern Silk road ethnic populations

Zhou, C., Gao, F., Gao, J., Yuan, J., Lu, J., Sun, Z., Xu, M., Engel, J., Hui, W., Gilissen, L. J. W. J. & Chen, H., Jun 2020, In : Alimentary Pharmacology and Therapeutics. 51, 11, p. 1116-1129 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Reciprocal cybrids reveal how organellar genomes affect plant phenotypes

Flood, P. J., Theeuwen, T. P. J. M., Schneeberger, K., Keizer, P., Kruijer, W., Severing, E., Kouklas, E., Hageman, J. A., Wijfjes, R., Calvo-Baltanas, V., Becker, F. F. M., Schnabel, S. K., Willems, L. A. J., Ligterink, W., Van Arkel, J., Mumm, R., Gualberto, J. M., Savage, L., Kramer, D. M., Keurentjes, J. J. B. & 5 others, Van Eeuwijk, F., Koornneef, M., Harbinson, J., Aarts, M. G. M. & Wijnker, E., 13 Jan 2020, In : Nature Plants. 6, 1, p. 13-21

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

Statement on advancing the assessment of chemical mixtures and their risks for human health and the environment

Drakvik, E., Altenburger, R., Aoki, Y., Backhaus, T., Bahadori, T., Barouki, R., Brack, W., Cronin, M. T. D., Demeneix, B., Hougaard Bennekou, S., van Klaveren, J., Kneuer, C., Kolossa-Gehring, M., Lebret, E., Posthuma, L., Reiber, L., Rider, C., Rüegg, J., Testa, G., van der Burg, B. & 6 others, van der Voet, H., Warhurst, M., van de Water, B., Yamazaki, K., Öberg, M. & Bergman, Å., Jan 2020, In : Environment International. 134, 105267.

Research output: Contribution to journalLetterAcademicpeer-review

Open Access
2 Citations (Scopus)

The MCRA toolbox of models and data to support chemical mixture risk assessment

van der Voet, H., Kruisselbrink, J. W., de Boer, W. J., van Lenthe, M. S., van den Heuvel, J. J. B., Crépet, A., Kennedy, M. C., Zilliacus, J., Beronius, A., Tebby, C., Brochot, C., Luckert, C., Lampen, A., Rorije, E., Sprong, C. & van Klaveren, J. D., Apr 2020, In : Food and Chemical Toxicology. 138, 111185.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Threshold effects of air pollution and climate change on understory plant communities at forested sites in the eastern United States

McDonnell, T. C., Reinds, G. J., Wamelink, G. W. W., Goedhart, P. W., Posch, M., Sullivan, T. J. & Clark, C. M., Jul 2020, In : Environmental Pollution. 262, 114351.

Research output: Contribution to journalArticleAcademicpeer-review

2019

Agent-based modelling of socio-ecological systems: Models, projects and ontologies

Gotts, N. M., van Voorn, G. A. K., Polhill, J. G., de Jong, E., Edmonds, B., Hofstede, G. J. & Meyer, R., Dec 2019, In : Ecological Complexity. 40, B, 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

An Integrated System for the Automated Recording and Analysis of Insect Behavior in T-maze Arrays

Jongsma, M. A., Thoen, H., Poleij, L. M., Wiegers, G. L., Goedhart, P. W., Dicke, M., Noldus, L. P. J. J. & Kruisselbrink, J. W., 29 Jan 2019, In : Frontiers in Plant Science. 10, 20.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

A probabilistic approach for risk-benefit assessment of food substitutions: A case study on substituting meat by fish

Thomsen, S. T., de Boer, W., Pires, S. M., Devleesschauwer, B., Fagt, S., Andersen, R., Poulsen, M. & van der Voet, H., 1 Apr 2019, In : Food and Chemical Toxicology. 126, p. 79-96

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Author Correction: Climatic controls of decomposition drive the global biogeography of forest-tree symbioses

28 Jun 2019, In : Nature. 571, 7765, E8.

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access
1 Citation (Scopus)
Open Access
1 Citation (Scopus)

Climatic controls of decomposition drive the global biogeography of forest-tree symbioses

Steidinger, B. S., Crowther, T. W., Liang, J., Van Nuland, M. E., Werner, G. D. A., Reich, P. B., Nabuurs, G., de-Miguel, S., Zhou, M., Picard, N., Herault, B., Zhao, X., Zhang, C., Routh, D., Peay, K. G., Herold, M., Decuyper, M., Avitabile, V., DeVries, B. R., Hengeveld, G. M. & 3 others, Poorter, L., Schelhaas, M. & Bongers, F., 15 May 2019, In : Nature. 569, 7756, p. 404-408

Research output: Contribution to journalLetterAcademicpeer-review

38 Citations (Scopus)
Open Access

Combining Crop Growth Modeling and Statistical Genetic Modeling to Evaluate Phenotyping Strategies

Bustos-Korts, D., Boer, M. P., Malosetti, M., Chapman, S., Chenu, K., Zheng, B. & van Eeuwijk, F. A., 27 Nov 2019, In : Frontiers in Plant Science. 10, 1491.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Combining pedigree and genomic information to improve prediction quality: an example in sorghum

Velazco, J. G., Malosetti, M., Hunt, C. H., Mace, E. S., Jordan, D. R. & van Eeuwijk, F. A., 1 Jul 2019, In : Theoretical and Applied Genetics. 132, 7, p. 2055-2067 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Conclusion

Wehrens, H. R. M. J. & Salek, R., 19 Aug 2019, Metabolomics: Practical Guide to Design and Analysis. Wehrens, R. & Salek, R. (eds.). 1st ed. New York: Chapman and Hall, 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Construction of Genetic Linkage Maps in Multiparental Populations

Zheng, C., Boer, M. P. & van Eeuwijk, F. A., 1 Aug 2019, In : Genetics. 212, 4, p. 1031-1044 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Coupling DAD and MS data in untargeted metabolomics

Wehrens, H. R. M. J., Engel, J., van Treuren, R., de Vos, R., Haug, K. & Rocca-Serra, P., 2019.

Research output: Contribution to conferencePoster

Open Access

Critical comparison of methods for fault diagnosis in metabolomics data

Koeman, M., Engel, J., Jansen, J. & Buydens, L., 1 Dec 2019, In : Scientific Reports. 9, 1, 1123 .

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Deep learning based plant part detection

Barth, R., Afonso, M. V. & Chauhan, A., 2019, EFITA Book of Abstracts. EFITA, p. 40-40

Research output: Chapter in Book/Report/Conference proceedingAbstract

Deep learning based plant part detection in Greenhouse settings

Afonso, M. V., Barth, R. & Chauhan, A., 27 Jul 2019, 12th EFITA International Conference: Digitizing Agriculture. Rhodes Island, Greece: EFITA, p. 48-53 1 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Detection of tomato flowers from greenhouse images using colorspace transformations

Afonso, M., Mencarelli, A., Polder, G., Wehrens, R., Lensink, D. & Faber, N., 1 Jan 2019, Progress in Artificial Intelligence: 19th EPIA Conference on Artificial Intelligence, EPIA 2019, Proceedings, Part I. Moura Oliveira, P., Novais, P. & Reis, L. P. (eds.). Springer Verlag, p. 146-155 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); no. LNAI 11804).

Research output: Chapter in Book/Report/Conference proceedingConference paper

1 Citation (Scopus)

De variatie aan insecten in laagveenmoerassen: Het spectrum aan soortgroepen in verschillende habitattypen in Nederlandse laagveenmoerassen

Stam, J. M., Kleijn, D., te Beest, D., Ozinga, W. A., Schmidt, A. M., Noordam, A. P., Burgers, J., van Kats, R. J. M., Aukema, B., Lammertsma, D. R. & Siepel, H., 2019, Wageningen: Wageningen Environmental Research. 41 p. (Wageningen Environmental Research rapport; no. 2961)

Research output: Book/ReportReportProfessional

Open Access

Developing a stronger and better - tasting mushroom with unique features: An innovative multi-disciplinary approach

Baars, J., Mumm, R., Stijger, I., Engel, J. & Wehrens, R., 2019, Wageningen: Stichting Wageningen Research, Wageningen Plant Research, Business unit Plant Breeding. 36 p. (Rapport / Stichting Wageningen Research, Wageningen Plant Research, Business unit Plant Breeding; no. 2019-1)

Research output: Book/ReportReportProfessional

Open Access

Differently Pre-treated Alfalfa Silages Affect the in vitro Ruminal Microbiota Composition

Hartinger, T., Edwards, J. E., Gómez Expósito, R., Smidt, H., ter Braak, C. J. F., Gresner, N. & Südekum, K. H., 3 Dec 2019, In : Frontiers in Microbiology. 10, 2761.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Effects of abiotic variables on the survival of discarded bycatches in North Sea pulse-trawl fisheries

Schram, E., Goedhart, P. W. & Molenaar, P., May 2019, IJmuiden: Wageningen Marine Research. 32 p. (Wageningen Marine Research rapport; no. C040/19)

Research output: Book/ReportReportProfessional

Open Access

Effects of reduced crossover recombination on quantitative trait analysis

Wijnen, C. L., 2019, Wageningen: Wageningen University. 175 p.

Research output: Thesisinternal PhD, WU

Open Access
2 Citations (Scopus)