Research Output

2020

ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining

Mungan, M. D., Alanjary, M., Blin, K., Weber, T., Medema, M. H. & Ziemert, N., 2 Jul 2020, In : Nucleic acids research. 48, W1, p. W546-W552

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Assessing specialized metabolite diversity of Alnus species by a digitized LC–MS/MS data analysis workflow

Kang, K. B., Woo, S., Ernst, M., van der Hooft, J. J. J., Nothias, L. F., da Silva, R. R., Dorrestein, P. C., Sung, S. H. & Lee, M., 1 May 2020, In : Phytochemistry. 173, 112292.

Research output: Contribution to journalArticleAcademicpeer-review

Caretta – A multiple protein structure alignment and feature extraction suite

Akdel, M., Durairaj, J., de Ridder, D. & van Dijk, A. D. J., 2020, In : Computational and Structural Biotechnology Journal. 18, p. 981-992 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Computational genomic discovery of diverse gene clusters harbouring Fe-S flavoenzymes in anaerobic gut microbiota

Andreu, V. P., Fischbach, M. A. & Medema, M. H., 14 May 2020, In : Microbial Genomics. 6, 5, p. 1-8 8 p., 000373.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Crash Course Machine Learning

Kootstra, G. W., van Dijk, A. D. J., Rapado Rincon, D. & Durairaj, J., 3 Feb 2020, Wageningen : Wageningen University & Research.

Research output: Other contribution

Open Access

Designing Eukaryotic Gene Expression Regulation Using Machine Learning

de Jongh, R. P. H., van Dijk, A. D. J., Julsing, M. K., Schaap, P. J. & de Ridder, D., Feb 2020, In : Trends in Biotechnology. 38, 2, p. 191-201

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Detection of QTLs for genotype × environment interactions in tomato seeds and seedlings

Geshnizjani, N., Snoek, B. L., Willems, L. A. J., Rienstra, J. A., Nijveen, H., Hilhorst, H. W. M. & Ligterink, W., 17 May 2020, In : Plant Cell and Environment. 43, 8, p. 1973-1988

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Dormancy cycling: Translation related transcripts are the main difference between dormant and non‐dormant seeds in the field

Buijs, G., Vogelzang, A., Nijveen, H. & Bentsink, L., Apr 2020, In : The Plant Journal. 102, 2, p. 327-339

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Ecology and genomics of Actinobacteria: new concepts for natural product discovery

van Bergeijk, D. A., Terlouw, B. R., Medema, M. H. & van Wezel, G. P., 9 Jun 2020, In : Nature Reviews Microbiology.

Research output: Contribution to journalArticleAcademicpeer-review

Eleven grand challenges in single-cell data science

Lähnemann, D., Köster, J., Szczurek, E., McCarthy, D. J., Hicks, S. C., Robinson, M. D., Vallejos, C. A., Campbell, K. R., Beerenwinkel, N., Mahfouz, A., Pinello, L., Skums, P., Stamatakis, A., Attolini, C. S. O., Aparicio, S., Baaijens, J., Balvert, M., de Barbanson, B., Cappuccio, A., Corleone, G. & 31 others, Dutilh, B. E., Florescu, M., Guryev, V., Holmer, R., Jahn, K., Lobo, T. J., Keizer, E. M., Khatri, I., Kielbasa, S. M., Korbel, J. O., Kozlov, A. M., Kuo, T. H., Lelieveldt, B. P. F., Mandoiu, I. I., Marioni, J. C., Marschall, T., Mölder, F., Niknejad, A., Raczkowski, L., Reinders, M., de Ridder, J., Saliba, A. E., Somarakis, A., Stegle, O., Theis, F. J., Yang, H., Zelikovsky, A., McHardy, A. C., Raphael, B. J., Shah, S. P. & Schönhuth, A., 7 Feb 2020, In : Genome Biology. 21, 1, 31.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild

Pascoal, S., Risse, J. E., Zhang, X., Blaxter, M., Cezard, T., Challis, R. J., Gharbi, K., Hunt, J., Kumar, S., Langan, E., Liu, X., Rayner, J. G., Ritchie, M. G., Snoek, B. L., Trivedi, U. & Bailey, N. W., 1 Feb 2020, In : Evolution Letters. 4, 1, p. 19-33

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Hap10: Reconstructing accurate and long polyploid haplotypes using linked reads

Majidian, S., Kahaei, M. H. & De Ridder, D., 18 Jun 2020, In : BMC Bioinformatics. 21, 1, 253.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Impact of hydraulic retention time on community assembly and function of photogranules for wastewater treatment

Trebuch, L. M., Oyserman, B. O., Janssen, M., Wijffels, R. H., Vet, L. E. M. & Fernandes, T. V., 15 Apr 2020, In : Water Research. 173, 115506.

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Linking genomics and metabolomics to chart specialized metabolic diversity

van der Hooft, J. J. J., Mohimani, H., Bauermeister, A., Dorrestein, P. C., Duncan, K. R. & Medema, M. H., 7 Jun 2020, In : Chemical Society Reviews. 49, 11, p. 3297-3314 18 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Mass spectrometry searches using MASST

Wang, M., Jarmusch, A. K., Vargas, F., Aksenov, A. A., Gauglitz, J. M., Weldon, K., Petras, D., da Silva, R., Quinn, R., Melnik, A. V., van der Hooft, J. J. J., Caraballo-Rodríguez, A. M., Nothias, L. F., Aceves, C. M., Panitchpakdi, M., Brown, E., Di Ottavio, F., Sikora, N., Elijah, E. O., Labarta-Bajo, L. & 16 others, Gentry, E. C., Shalapour, S., Kyle, K. E., Puckett, S. P., Watrous, J. D., Carpenter, C. S., Bouslimani, A., Ernst, M., Swafford, A. D., Zúñiga, E. I., Balunas, M. J., Klassen, J. L., Loomba, R., Knight, R., Bandeira, N. & Dorrestein, P. C., 1 Jan 2020, In : Nature Biotechnology. 38, p. 23-26

Research output: Contribution to journalLetterAcademic

9 Citations (Scopus)

Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing

Fuentes, R., Hesselink, T., Nieuwenhuis, R., Bakker, L. V., Schijlen, E. G. W. M., van Dooijeweert, W., Diaz Trivino, S., de Haan, J. R., Sanchez Perez, G. F., Zhang, X., Fransz, P., de Jong, J. H. S. G. M., van Dijk, A. D. J., de Ridder, D. & Peters, S. A., May 2020, In : The Plant Journal. 102, 3, p. 480-492

Research output: Contribution to journalArticleAcademicpeer-review

MIBiG 2.0: a repository for biosynthetic gene clusters of known function

Kautsar, S. A., Blin, K., Shaw, S., Navarro Munoz, J. C., Terlouw, B., van der Hooft, J. J. J., Van Santen, J. A., Tracanna, V., Suarez Duran, H., Pascal Andreu, V., Selem Mojica, N., Alanjary, M., Robinson, S., Lund, G., Epstein, S. C., Sisto, A. C., Charkoudian, L. K., Collemare, J., Linington, R. G., Weber, T. & 1 others, Medema, M. H., 8 Jan 2020, In : Nucleic acids research. 48, D1, p. D454-D458 4 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
17 Citations (Scopus)

Microbial and volatile profiling of soils suppressive to Fusarium culmorum of wheat

Ossowicki, A., Tracanna, V., Petrus, M. L. C., van Wezel, G., Raaijmakers, J. M., Medema, M. H. & Garbeva, P., 26 Feb 2020, In : Proceedings. Biological sciences. 287, 1921, 10 p., 20192527.

Research output: Contribution to journalArticleAcademicpeer-review

Microbiome-derived carnitine mimics as previously unknown mediators of gut-brain axis communication

Hulme, H., Meikle, L. M., Strittmatter, N., van der Hooft, J. J. J., Swales, J., Bragg, R. A., Villar, V. H., Ormsby, M. J., Barnes, S., Brown, S. L., Dexter, A., Kamat, M. T., Komen, J. C., Walker, D., Milling, S., Osterweil, E. K., MacDonald, A. S., Schofield, C. J., Tardito, S., Bunch, J. & 6 others, Douce, G., Edgar, J. M., Edrada-Ebel, R. A., Goodwin, R. J. A., Burchmore, R. & Wall, D. M., 11 Mar 2020, In : Science Advances. 6, 11, eaax6328.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Minimum error correction-based haplotype assembly: Considerations for long read data

Majidian, S., Kahaei, M. H. & de Ridder, D., 12 Jun 2020, In : PLoS ONE. 15, 6, p. e0234470

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

PCADD: SNV prioritisation in Sus scrofa

Groß, C., Derks, M., Megens, H. J., Bosse, M., Groenen, M. A. M., Reinders, M. & De Ridder, D., 7 Feb 2020, In : Genetics Selection Evolution. 52, 1, 4.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Reciprocal cybrids reveal how organellar genomes affect plant phenotypes

Flood, P. J., Theeuwen, T. P. J. M., Schneeberger, K., Keizer, P., Kruijer, W., Severing, E., Kouklas, E., Hageman, J. A., Wijfjes, R., Calvo-Baltanas, V., Becker, F. F. M., Schnabel, S. K., Willems, L. A. J., Ligterink, W., Van Arkel, J., Mumm, R., Gualberto, J. M., Savage, L., Kramer, D. M., Keurentjes, J. J. B. & 5 others, Van Eeuwijk, F., Koornneef, M., Harbinson, J., Aarts, M. G. M. & Wijnker, E., 13 Jan 2020, In : Nature Plants. 6, 1, p. 13-21

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

Reproducible molecular networking of untargeted mass spectrometry data using GNPS

Aron, A. T., Gentry, E. C., McPhail, K. L., Nothias, L. F., Nothias-Esposito, M., Bouslimani, A., Petras, D., Gauglitz, J. M., Sikora, N., Vargas, F., van der Hooft, J. J. J., Ernst, M., Kang, K. B., Aceves, C. M., Caraballo-Rodríguez, A. M., Koester, I., Weldon, K. C., Bertrand, S., Roullier, C., Sun, K. & 22 others, Tehan, R. M., Boya P, C. A., Christian, M. H., Gutiérrez, M., Ulloa, A. M., Tejeda Mora, J. A., Mojica-Flores, R., Lakey-Beitia, J., Vásquez-Chaves, V., Zhang, Y., Calderón, A. I., Tayler, N., Keyzers, R. A., Tugizimana, F., Ndlovu, N., Aksenov, A. A., Jarmusch, A. K., Schmid, R., Truman, A. W., Bandeira, N., Wang, M. & Dorrestein, P. C., Jun 2020, In : Nature protocols. 15, p. 1954–1991

Research output: Contribution to journalArticleAcademicpeer-review

The Genome of Peronospora belbahrii Reveals High Heterozygosity, a Low Number of Canonical Effectors, and TC-Rich Promoters

Thines, M., Sharma, R., Rodenburg, S. Y. A., Gogleva, A., Judelson, H. S., Xia, X., van den Hoogen, J., Kitner, M., Klein, J., Neilen, M., de Ridder, D., Seidl, M. F., van den Ackerveken, G., Govers, F., Schornack, S. & Studholme, D. J., 1 Apr 2020, In : Molecular Plant-Microbe Interactions. 33, 5, p. 742-753 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

The planctomycete Stieleria maiorica Mal15T employs stieleriacines to alter the species composition in marine biofilms

Kallscheuer, N., Jeske, O., Sandargo, B., Boedeker, C., Wiegand, S., Bartling, P., Jogler, M., Rohde, M., Petersen, J., Medema, M. H., Surup, F. & Jogler, C., 12 Jun 2020, In : Communications Biology. 3, 1, 303.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages

Gauglitz, J. M., Aceves, C. M., Aksenov, A. A., Aleti, G., Almaliti, J., Bouslimani, A., Brown, E. A., Campeau, A., Caraballo-Rodríguez, A. M., Chaar, R., da Silva, R. R., Demko, A. M., Di Ottavio, F., Elijah, E., Ernst, M., Ferguson, L. P., Holmes, X., Jarmusch, A. K., Jiang, L., Kang, K. B. & 27 others, Koester, I., Kwan, B., Li, J., Li, Y., Melnik, A. V., Molina-Santiago, C., Ni, B., Oom, A. L., Panitchpakdi, M. W., Petras, D., Quinn, R., Sikora, N., Spengler, K., Teke, B., Tripathi, A., Ul-Hasan, S., van der Hooft, J. J. J., Vargas, F., Vrbanac, A., Vu, A. Q., Wang, S. C., Weldon, K., Wilson, K., Wozniak, J. M., Yoon, M., Bandeira, N. & Dorrestein, P. C., 1 Jan 2020, In : Food Chemistry. 302, 125290.

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans

Snoek, B. L., Sterken, M. G., Hartanto, M., Van Zuilichem, A-J., Kammenga, J. E., De Ridder, D. & Nijveen, H., 21 Jan 2020, In : Database : the Journal of Biological Databases and Curation. 2020, baz149.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

WormQTL3.0: supporting more paradigms and analyses

Sterken, M. G., Snoek, L. B. & Nijveen, H., 24 Jun 2020.

Research output: Contribution to conferencePosterAcademic

2019

A blueprint of seed desiccation sensitivity in the genome of Castanospermum australe

Correia Silva Santana Marques, A., Dias Costa, M. C., Chathuri, U., Jonkheer, E., Zhao, T., Schijlen, E. G. W. M., Derks, M. F. L., Nijveen, H., Marcet-Houben, M., Julca, I., Delahaie, J., Schranz, E., Gabaldon, T., Pelletier, S., Leprince, O., Ligterink, W., Buitink, J., Hilhorst, H. W. M. & Farrant, J. M., 10 Jun 2019.

Research output: Working paperAcademic

Open Access

Accelerating Metabolite Identification in Natural Product Research: Toward an Ideal Combination of Liquid Chromatography-High-Resolution Tandem Mass Spectrometry and NMR Profiling, in Silico Databases, and Chemometrics

Wolfender, J. L., Nuzillard, J. M., Van Der Hooft, J. J. J., Renault, J. H. & Bertrand, S., 2 Jan 2019, In : Analytical Chemistry. 91, 1, p. 704-742

Research output: Contribution to journalArticleAcademicpeer-review

31 Citations (Scopus)

A computational framework to explore large-scale biosynthetic diversity

Navarro-Muñoz, J. C., Selem-Mojica, N., Mullowney, M. W., Kautsar, S. A., Tryon, J. H., Parkinson, E. I., De Los Santos, E. L. C., Yeong, M., Cruz-Morales, P., Abubucker, S., Roeters, A., Lokhorst, W., Fernandez-Guerra, A., Cappelini, L. T. D., Goering, A. W., Thomson, R. J., Metcalf, W. W., Kelleher, N. L., Barona-Gomez, F. & Medema, M. H., 25 Nov 2019, In : Nature Chemical Biology. 16, p. 60-68

Research output: Contribution to journalArticleAcademicpeer-review

21 Citations (Scopus)

A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters

Witjes, L., Kooke, R., van der Hooft, J. J. J., de Vos, R. C. H., Keurentjes, J. J. B., Medema, M. H. & Nijveen, H., 2 Apr 2019, In : BMC Research Notes. 12, 1, 194.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits

Snoek, B. L., Volkers, J. M., Nijveen, H., Petersen, C., Dirksen, P., Sterken, M. G., Nakad, R., Riksen, J. A. G., Rosenstiel, P. C., Stastna, J. J., Braekman, B. P., Harvey, S. C., Schulenburg, H. & Kammenga, J. E., 12 Mar 2019, In : BMC Biology. 17, 17 p., 24.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

An analysis of characterized plant sesquiterpene synthases

Durairaj, J., Di Girolamo, A., Bouwmeester, H. J., de Ridder, D., Beekwilder, J. & van Dijk, A. D. J., Feb 2019, In : Phytochemistry. 158, p. 157-165

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

Blin, K., Shaw, S., Steinke, K., Villebro, R., Ziemert, N., Lee, S. Y., Medema, M. H. & Weber, T., 2 Jul 2019, In : Nucleic acids research. 47, W1, p. W81-W87

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
271 Citations (Scopus)

Application of high performance compute technology in bioinformatics

Warris, S., 2019, Wageningen: Wageningen University. 156 p.

Research output: Thesisinternal PhD, WU

Open Access

Applied evolution: Phylogeny-based approaches in natural products research

Adamek, M., Alanjary, M. & Ziemert, N., 1 Sep 2019, In : Natural Product Reports. 36, 9, p. 1295-1312 18 p.

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

Artificial intelligence in the lab: ask not what your computer can do for you

de Ridder, D., Jan 2019, In : Microbial Biotechnology. 12, 1, p. 38-40

Research output: Contribution to journalComment/Letter to the editorAcademic

Open Access
4 Citations (Scopus)

Assessing specialized metabolite diversity in the cosmopolitan plant genus Euphorbia l.

Ernst, M., Nothias, L. F., van der Hooft, J. J. J., Silva, R. R., Saslis-Lagoudakis, C. H., Grace, O. M., Martinez-Swatson, K., Hassemer, G., Funez, L. A., Simonsen, H. T., Medema, M. H., Staerk, D., Nilsson, N., Lovato, P., Dorrestein, P. C. & Rønsted, N., 2 Jul 2019, In : Frontiers in Plant Science. 10, 846.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J. E., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C. T., Callahan, B. J., Caraballo-Rodríguez, A. M., Chase, J., Cope, E. K. & 92 others, Da Silva, R., Diener, C., Dorrestein, P. C., Douglas, G. M., Durall, D. M., Duvallet, C., Edwardson, C. F., Ernst, M., Estaki, M., Fouquier, J., Gauglitz, J. M., Gibbons, S. M., Gibson, D. L., Gonzalez, A., Gorlick, K., Guo, J., Hillmann, B., Holmes, S., Holste, H., Huttenhower, C., Huttley, G. A., Janssen, S., Jarmusch, A. K., Jiang, L., Kaehler, B. D., Kang, K. B., Keefe, C. R., Keim, P., Kelley, S. T., Knights, D., Koester, I., Kosciolek, T., Kreps, J., Langille, M. G. I., Lee, J., Ley, R., Liu, Y. X., Loftfield, E., Lozupone, C., Maher, M., Marotz, C., Martin, B. D., McDonald, D., McIver, L. J., Melnik, A. V., Metcalf, J. L., Morgan, S. C., Morton, J. T., Naimey, A. T., Navas-Molina, J. A., Nothias, L. F., Orchanian, S. B., Pearson, T., Peoples, S. L., Petras, D., Preuss, M. L., Pruesse, E., Rasmussen, L. B., Rivers, A., Robeson, M. S., Rosenthal, P., Segata, N., Shaffer, M., Shiffer, A., Sinha, R., Song, S. J., Spear, J. R., Swafford, A. D., Thompson, L. R., Torres, P. J., Trinh, P., Tripathi, A., Turnbaugh, P. J., Ul-Hasan, S., van der Hooft, J. J. J., Vargas, F., Vázquez-Baeza, Y., Vogtmann, E., von Hippel, M., Walters, W., Wan, Y., Wang, M., Warren, J., Weber, K. C., Williamson, C. H. D., Willis, A. D., Xu, Z. Z., Zaneveld, J. R., Zhang, Y., Zhu, Q., Knight, R. & Caporaso, J. G., 9 Aug 2019, In : Nature Biotechnology.

Research output: Contribution to journalComment/Letter to the editorAcademic

6 Citations (Scopus)

BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

Meleshko, D., Mohimani, H., Tracanna, V., Hajirasouliha, I., Medema, M. H., Korobeynikov, A. & Pevzner, P. A., 1 Aug 2019, In : Genome Research. 29, 8, p. 1352-1362 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Comprehensive mass spectrometry-guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae

Kang, K. B., Ernst, M., van der Hooft, J. J. J., da Silva, R. R., Park, J., Medema, M. H., Sung, S. H. & Dorrestein, P. C., 20 Feb 2019, In : The Plant Journal.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)

Comprehensive phenotyping reveals interactions and functions of Arabidopsis thaliana TCP genes in yield determination

van Es, S. W., van der Auweraert, E., Rodrigues da Silveira, S., Angenent, G. C., van Dijk, A. D. J. & Immink, G. H., 22 Mar 2019, In : The Plant Journal.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Computational identification of co-evolving multi-gene modules in microbial biosynthetic gene clusters

Del Carratore, F., Zych, K., Cummings, M., Takano, E., Medema, M. H. & Breitling, R., 28 Feb 2019, In : Communications Biology. 2, 83.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Computer-aided re-engineering of nonribosomal peptide and polyketide biosynthetic assembly lines

Alanjary, M., Cano-Prieto, C., Gross, H. & Medema, M. H., 1 Sep 2019, In : Natural Product Reports. 36, 9, p. 1249-1261 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology

Wiegand, S., Jogler, M., Boedeker, C., Pinto, D., Vollmers, J., Rivas-Marín, E., Kohn, T., Peeters, S. H., Heuer, A., Rast, P., Oberbeckmann, S., Bunk, B., Jeske, O., Meyerdierks, A., Storesund, J. E., Kallscheuer, N., Lücker, S., Lage, O. M., Pohl, T., Merkel, B. J. & 17 others, Hornburger, P., Müller, R. W., Brümmer, F., Labrenz, M., Spormann, A. M., Op den Camp, H. J. M., Overmann, J., Amann, R., Jetten, M. S. M., Mascher, T., Medema, M. H., Devos, D. P., Kaster, A. K., Øvreås, L., Rohde, M., Galperin, M. Y. & Jogler, C., 18 Nov 2019, In : Nature Microbiology. 5, p. 126-140

Research output: Contribution to journalArticleAcademicpeer-review

20 Citations (Scopus)

Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra

Rogers, S., Wei Ong, C., Wandy, J., Ernst, M., Ridder, L. & Van Der Hooft, J. J. J., 29 Jan 2019, In : Faraday Discussions. 218, p. 284-302 24 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Drivers of metabolic diversification: how dynamic genomic neighbourhoods generate new biosynthetic pathways in the Brassicaceae

Liu, Z., Suarez Duran, H., Harnvanichvech, Y., Stephenson, M. J., Schranz, M. E., Nelson, D., Medema, M. H. & Osbourn, A., 26 Nov 2019, In : New Phytologist. 227, 4, p. 1109-1123

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Exercise self-efficacy is weakly related to engagement in physical activity in persons with long-standing spinal cord injury

Kooijmans, H., Post, M., Motazedi, E., Spijkerman, D., Bongers-Janssen, H., Stam, H. & Bussman, H., 24 Mar 2019, In : Disability and Rehabilitation.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Family-based haplotype estimation and allele dosage correction for polyploids using short sequence reads

Motazedi, E., Maliepaard, C., Finkers, R., Visser, R. & De Ridder, D., 16 Apr 2019, In : Frontiers in Genetics. 10, MAR, 335.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access